BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488494
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16400.1 | Symbols: TRXF2, ATF2 | thioredoxin F2 | chr5:5363... 1092 0.0
> AT5G16400.1 | Symbols: TRXF2, ATF2 | thioredoxin F2 | chr5:5363661-5365334
REVERSE LENGTH=887
Length=887
Score = 1092 bits (591), Expect = 0.0
Identities = 690/735 (94%), Gaps = 17/735 (2%)
Strand=Plus/Plus
Query 1 AATTTGGAAATCAAAAGTCGTCTCTCAGGGTGGTCCTTTGAAAGATCACACTACTG--TT 58
||||||||||||||||||| || | || ||| ||||||||||||||||||||||| ||
Sbjct 7 AATTTGGAAATCAAAAGTC-TC-C-CA-GGT--TCCTTTGAAAGATCACACTACTGTTTT 60
Query 59 TTGGAGTCGAGCTTCTTCTTCCACAATGCCTCTCTCTCTTCGAGTCGCTCCATCTCCGAC 118
||||| ||||||||||||||| ||||||||||||||||| ||| | ||||||||||||||
Sbjct 61 TTGGACTCGAGCTTCTTCTTCAACAATGCCTCTCTCTCTCCGACTTGCTCCATCTCCGAC 120
Query 119 ATATTTCCGTTACTCTCCGACTT-CATCTACCGGCGCTGTCGGATTTCCCCCCGTGAAGC 177
| ||||||||| ||||||| || ||||||||||||| | |||||| ||||||||||||
Sbjct 121 GTCTTTCCGTTATTCTCCGA-TTACATCTACCGGCGCCGGAGGATTTTCCCCCGTGAAGC 179
Query 178 AGCACTGCCGGATCCCGAATTCCGGCGTCGCGACGAAAATCGGATTCTGTTCTGGTGGTG 237
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 180 AGCACTGCCGGATCCCGAATTCGGGCGTCGCGACGAAAATTGGATTCTGTTCTGGTGGTG 239
Query 238 GTGGTGATGTTTTAGATTCCGGTAAG-AGGATTGGTTCCTATGTGGTGAGGTGTAGCTTA 296
|| | | |||||||||||||||| || ||||||||||||| |||||||||||||||||||
Sbjct 240 GT-G-G-TGTTTTAGATTCCGGT-AGAAGGATTGGTTCCTGTGTGGTGAGGTGTAGCTTA 295
Query 297 GAAACAGTGAATGTCAGTGTCGGCCAGGTGACGGAGGTTGATAAGGACACGTTCTGGCCA 356
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 296 GAAACAGTGAATGTCACTGTTGGCCAGGTGACGGAGGTTGATAAGGACACGTTCTGGCCA 355
Query 357 ATTGTTAAAGCCGCCGGTGATAAGATTGTTGTCCTCGACATGTACACTCAGTGGTGTGGT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ATTGTTAAAGCCGCCGGTGATAAGATTGTTGTCCTCGACATGTACACTCAGTGGTGTGGT 415
Query 417 CCTTGCAAAGTGATTGCTCCCAAGTACAAAGAACTATCGGAGAAGTACCAGGACATGGTG 476
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 416 CCTTGCAAAGTGATTGCTCCCAAATACAAAGAGCTATCGGAGAAGTACCAGGACATGGTG 475
Query 477 TTTCTTAAGCTTGACTGCAACCAAGAAAACAAGCCATTGGC-AAAGGAGCTAGGAATTAG 535
|||||||||||||| || |||||||| |||||||||||||| |||| |||||||||||||
Sbjct 476 TTTCTTAAGCTTGATTGTAACCAAGACAACAAGCCATTGGCGAAAG-AGCTAGGAATTAG 534
Query 536 AGTGGTTCCAACCTTTAAGATCTTGAAGGACAACAAGGTAGTAAAGGAAGTGACCGGGGC 595
|||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 535 AGTGGTTCCAACTTTTAAAATCTTGAAAGACAACAAGGTAGTAAAGGAAGTGACCGGGGC 594
Query 596 AAAATATGAAGACTTACTTGGAGCCATTGAAGCAGCAAGGTCAGGCTGAGTCTCTCTCTA 655
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 595 AAAATATGAAGACTTACTTGCAGCCATTGAAGCAGCAAGGTCAGGCTGAGTCTCTCTCTA 654
Query 656 TATCACTCATTATGTAAAGTATTAGGATCATACTCCATCCATGTAATTGGTTTGGTTCTA 715
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 655 TATCACTCATTATGTAAAGTATTAGGATCATTCTCCATCCATGTAATTCGTTTGGTTCTA 714
Query 716 TGTATGTAACTCTTT 730
|||||||||||||||
Sbjct 715 TGTATGTAACTCTTT 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35415073635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5