BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488495
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16420.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2499 0.0
> AT5G16420.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:5368034-5369641 FORWARD LENGTH=1608
Length=1608
Score = 2499 bits (1353), Expect = 0.0
Identities = 1526/1610 (95%), Gaps = 10/1610 (1%)
Strand=Plus/Plus
Query 1 ATGTTCCTTCCCCGCGTGAACGGCACGCGCTTTCGTCCACTCATAGCTTCTCGTCGTCTC 60
||||||||| ||||||||||| ||||||||| | |||| || |||||||||||||||||
Sbjct 1 ATGTTCCTTTCCCGCGTGAACCCCACGCGCTTCCCTCCATTCGTAGCTTCTCGTCGTCTC 60
Query 61 -T-T----CTCCGCCTCCGCCGCTTCTCTCCAGCAATACTGCACGGAGAAGCCCA-CGAT 113
| | ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||
Sbjct 61 TTCTCCGCCTCCGCCTCCGCCGCTTCTCTTCAGCAATACTGCACGGAGAAG-CCACCGAT 119
Query 114 CAAACCGTGGCCGCAGAGGCTATTCCCGAAGCGATTGGTCTCAATGATCACCCAACAGCA 173
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 120 CAAACCGTGGCCGCAGAGGCTATTCCCGAAGCGATTAGTCTCCATGATCACCCAACAGCA 179
Query 174 GAACATCGATCTCGCTCTCCAGATATTTCTCTACGCCGGTAAATCCCATCCCGGTTTCAC 233
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 180 GAACATCGATCTCGCTCTCCAAATATTTCTCTACGCCGGTAAATCTCATCCCGGTTTCAC 239
Query 234 TCACAATTACGATACTTACCACTCAATTCTCTTCAAACTATCCCGTGCTCGTGCTTTCGA 293
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCATAATTACGATACTTACCACTCAATTCTCTTCAAACTATCCCGTGCTCGTGCTTTCGA 299
Query 294 TCCCGTGGAGTCTCTCATGGCGGATCTTCGGAATTCATACCCGCCGATTAAATGCGGCGA 353
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 300 TCCCGTGGAGTCTCTCATGGCGGATCTTCGGAACTCATACCCTCCGATCAAATGCGGCGA 359
Query 354 GAATCTTTTCATCGACTTGCTTCGAAACTACGGTCTCGCTGGTCGATACGAATCTTCAAT 413
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 360 GAATCTCTTCATCGACTTGCTTCGAAACTACGGTCTCGCAGGTCGTTACGAATCTTCAAT 419
Query 414 GAGGATCTTTCTTCGAATCCCTGATTTCGGTGTTAAACGCTCCGTTAGATCGTTAAACAC 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGGATCTTTCTTCGAATCCCTGATTTCGGTGTTAAACGCTCCGTTAGATCGTTAAACAC 479
Query 474 ACTGTTAAACGTTCTAATCCAGAATCAGAGATTTGATTTGGTTCATGCCATGTTTAAGAA 533
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACTCTTAAACGTTTTAATCCAGAATCAGAGATTTGATTTGGTTCATGCCATGTTTAAGAA 539
Query 534 CAGTAAGGAGTCCTTTGGAATCACCCCCAACATCTTCACTTGTAATCTACTCGTCAAAGC 593
|||||||||||| |||||||| || || ||||||||||||||||||||||| ||||||||
Sbjct 540 CAGTAAGGAGTCTTTTGGAATTACGCCGAACATCTTCACTTGTAATCTACTAGTCAAAGC 599
Query 594 TCTCTGCAAGAAAAATGATATAGAAAGTGCATATAAAGTGCTCGACGAAATTCCTGCAAT 653
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 600 TCTCTGCAAGAAAAATGATATTGAAAGTGCATATAAAGTGCTCGACGAAATTCCTTCGAT 659
Query 654 GGGTTTGGTGCCAAATTTGGTGACTTACACTACGATTTTAGGTGGGTACGTTGCTAGAGG 713
||| || |||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 660 GGGATTAGTGCCAAATTTGGTGACTTACACTACGATTCTAGGTGGGTATGTTGCTAGAGG 719
Query 714 TGATATGGAATCGGCTAAGAGGGTTTTGGAAGAGATGTTGGATCGTGGGTGGTATCCGGA 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGATATGGAATCGGCTAAGAGGGTTTTGGAAGAGATGTTGGATCGTGGGTGGTATCCGGA 779
Query 774 TGCGACCACTTACACGGTTCTCATGGATGGTTACTGTAAGTTAGGGAGATTCTCCGAGGC 833
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 780 TGCGACGACTTACACTGTTCTCATGGATGGTTACTGTAAGTTAGGGAGATTCTCTGAGGC 839
Query 834 AGCTACGGTGATGGATGATATGGAAAAGAACGAGATTGAGCCAAATGAAGTAACTTATGG 893
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 840 AGCTACGGTGATGGATGATATGGAAAAGAATGAGATTGAGCCTAATGAAGTAACTTATGG 899
Query 894 AGTTATGATCAGAGCCTTATGCAGGGAGAAGAAATCCGGGGAAGCACGTAACATGTTCGA 953
|||||||||||||| ||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 900 TGTTATGATCAGAGCTTTATGTAAGGAGAAGAAATCTGGGGAAGCACGTAACATGTTCGA 959
Query 954 TGAAATGCTTGACAGAAGTTTTATGCCAGATTCTTCTCTTTGTTGTAAAGTTATTGATGC 1013
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGAAATGCTTGAGAGAAGTTTTATGCCAGATTCTTCTCTTTGTTGTAAAGTTATTGATGC 1019
Query 1014 GATGTGTGAAGACCACAAGGTGGATGAAGCATGTGGTCTGTGGAGAAAAATGTTGAAGAA 1073
| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GTTGTGTGAAGACCATAAGGTAGATGAAGCATGTGGTCTGTGGAGAAAAATGTTGAAGAA 1079
Query 1074 CAATTGTATGCCTGATAATGCTCTTCTGAGCACTCTTATCCATTGGCTTTGCAAAGAAGG 1133
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1080 CAATTGTATGCCTGATAATGCCCTTCTGAGCACTCTCATCCATTGGCTTTGTAAAGAAGG 1139
Query 1134 GAGAGTTACAGAAGCGAGGAAATTGTTCGATGAGTTTGAGAAAGGCTCGATCCCTAGTCT 1193
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1140 GAGAGTTACTGAAGCGAGGAAATTGTTTGATGAGTTTGAGAAAGGCTCGATCCCTAGTCT 1199
Query 1194 TTTGACGTACAACACGTTGATTGCTGGAATGTGCGAGAAGGGTGAGTTGACAGAGGCGGG 1253
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1200 CTTGACGTATAACACGTTGATTGCTGGAATGTGCGAGAAGGGAGAGTTGACAGAGGCGGG 1259
Query 1254 TAGATTATGGGACGACATGTTTGAGAGGAAATGTAAGCCGAATGCTTTCACGTATAACGT 1313
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TAGATTATGGGACGATATGTATGAGAGGAAATGTAAGCCGAATGCTTTCACGTATAACGT 1319
Query 1314 TTTGATCGAAGGCTTGTCCAAGAACGGAAATGTTAAAGAAGGAGTCAGAGTACTTGAAGA 1373
|||||| ||||| ||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 1320 TTTGATTGAAGGGTTGTCCAAGAATGGGAATGTTAAAGAAGGAGTCAGGGTACTTGAAGA 1379
Query 1374 GATGCTGGAGATTGGTTGCTTTCCCAACAAAACAACGTTCTTGATATTGTTCGAGGGGTT 1433
|||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||
Sbjct 1380 GATGCTGGAGATTGGTTGCTTTCCTAACAAAACAACGTTCCTGATATTGTTTGAGGGGTT 1439
Query 1434 GCAGAAGTTAGGAAAAGAAGAGGATGCGATTAAGATTGTTTCAATGGCTGTTATGAATGG 1493
|||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1440 GCAGAAGTTAGGGAAAGAAGAGGATGCGATGAAGATTGTTTCCATGGCTGTTATGAATGG 1499
Query 1494 AAAAGTTGATAGAGAGTCTTGGGAACTTTTCTTGAAGAAGTTTGTTGGTGAACTAGATAA 1553
|||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1500 GAAAGTTGATAAAGAGTCTTGGGAACTTTTCTTGAAGAAATTTGCTGGTGAACTAGATAA 1559
Query 1554 AGGGGT-TTGGGCTCTTAAAGAGTTGTTGCATGAAATTTCTGTCTCTTGA 1602
|||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1560 AGGGGTCTTGC-CTCTTAAAGAATTGTTGCATGAAATTTCTGTCTCTTGA 1608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79116058920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5