BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488496
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16440.1 | Symbols: IPP1 | isopentenyl diphosphate isomerase... 1546 0.0
AT3G02780.1 | Symbols: IPP2, IPIAT1, IDI2 | isopentenyl pyropho... 857 0.0
> AT5G16440.1 | Symbols: IPP1 | isopentenyl diphosphate isomerase
1 | chr5:5371627-5373735 FORWARD LENGTH=1174
Length=1174
Score = 1546 bits (837), Expect = 0.0
Identities = 937/985 (95%), Gaps = 7/985 (1%)
Strand=Plus/Plus
Query 1 ATGTCTACTGCTTCACTATTTAGcttcccttcatttcatctcagatccctcctt-cttc- 58
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 139 ATGTCTACTGCTTCACTATTTAGCTTCCCTTCATTTCATCTCAGATCCCTCCTTCCTTCT 198
Query 59 ctctc-tcttcttcttcttcctcctcttcccgatttgcccctctccgtctttctgcgatc 117
||||| |||||||||||||| |||||||||||||||||||||| |||||||||| |||||
Sbjct 199 CTCTCTTCTTCTTCTTCTTCTTCCTCTTCCCGATTTGCCCCTCCCCGTCTTTCTCCGATC 258
Query 118 cgatctcc-G-G-CGAGGTCTCACCTGTCTTTTCGCACTTTCTCAGCCGTCACCATGACC 174
|||||||| | | ||||| |||| |||||| ||||| |||||||||||||||||||||||
Sbjct 259 CGATCTCCGGCGCCGAGGACTCAGCTGTCTGTTCGCGCTTTCTCAGCCGTCACCATGACC 318
Query 175 GATGCTAACGATGCCGGAATGGATGCTGTTCAGAGACGACTCATGTTTGAGGACGAATGC 234
||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 319 GATTCTAACGATGCTGGAATGGATGCTGTTCAGAGACGACTCATGTTTGAAGACGAATGC 378
Query 235 ATTCTCGTTGATGAAAATGATCGTGTGGTTGGCCATGACACTAAATATAACTGTCATCTG 294
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 379 ATTCTCGTTGATGAAAATGATCGTGTGGTGGGACATGACACTAAGTATAACTGTCATCTG 438
Query 295 ATGGAAAAGATTGAAGCTGAGAATTTACTTCACAGAGCTTTCAGTGTGTTTTTATTCAAC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 ATGGAAAAGATTGAAGCTGAGAATTTACTTCACAGAGCTTTCAGTGTGTTTTTATTCAAC 498
Query 355 TCCAAGTATGAGTTGCTTCTCCAGCAACGTTCAAAAACAAAGGTTACTTTCCCACTTGTG 414
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 499 TCCAAGTATGAGTTGCTTCTCCAGCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTG 558
Query 415 TGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCTGAGCTTATTGAAGAGAGT 474
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 559 TGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCCGAGCTTATTGAAGAGAAT 618
Query 475 GTGCTTGGTGTAAGAAATGCTGCACAAAGGAAGCTTCTCGATGAGCTCGGGATAGTAGCT 534
|||||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||
Sbjct 619 GTGCTTGGTGTAAGAAATGCCGCACAAAGGAAGCTTTTCGATGAGCTCGGTATTGTAGCA 678
Query 535 GAAGATGTACCAGTCAATGAGTTCACTCCCTTGGGACGCATGCTTTACAAGGCACCTTCT 594
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 GAAGATGTACCAGTCGATGAGTTCACTCCCTTGGGACGCATGCTTTACAAGGCACCTTCT 738
Query 595 GATGGAAAATGGGGAGAGCACGAACTTGACTATCTACTTTTCATCGTGCGGGATGTGAAG 654
||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 739 GATGGGAAATGGGGAGAGCACGAAGTTGACTATCTACTCTTCATCGTGCGGGATGTGAAG 798
Query 655 CTTGAACCAAACCCGGATGAAGTGGCTGAGATCAAGTATGTGAGCAGGGAAGAGCTTAAG 714
||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 799 CTTCAACCAAACCCAGATGAAGTGGCTGAGATCAAGTACGTGAGCAGGGAAGAGCTTAAG 858
Query 715 GAGCTGGTGAAGAAAGCAGATGCAGGCGATGAAGCTGTGAAACTATCTCCATGGTTTAGA 774
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 859 GAGCTGGTGAAGAAAGCAGATGCTGGCGATGAAGCTGTGAAACTATCTCCATGGTTCAGA 918
Query 775 TTGGTGGTGGACAATTTCTTGATGAAGTGGTGGGATCATGTTGAGAAAGGAACTCTCATT 834
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 919 TTGGTGGTGGATAATTTCTTGATGAAGTGGTGGGATCATGTTGAGAAAGGAACTATCACT 978
Query 835 GAAGCTGCAGACATGAAAACCATTCACAAGCTCTGAACTTACCAGAAGTTTTGGATCTTC 894
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 979 GAAGCTGCAGACATGAAAACCATTCACAAGCTCTGAACTTTCCATAAGTTTTGGATCTTC 1038
Query 895 CCCTTCTCATAATAAAATTAAAAAATGAGACTTT-ATTGATTTCAGACAAAACTGGCAAC 953
|||||| |||||||||||||| | |||||||||| ||||||| |||||||||||||||||
Sbjct 1039 CCCTTCCCATAATAAAATTAAGAGATGAGACTTTTATTGATTACAGACAAAACTGGCAAC 1098
Query 954 AACATCTCTTCCTAGGAtttttttt 978
|| |||| |||||||||||||||||
Sbjct 1099 AAAATCTATTCCTAGGATTTTTTTT 1123
> AT3G02780.1 | Symbols: IPP2, IPIAT1, IDI2 | isopentenyl pyrophosphate:dimethylallyl
pyrophosphate isomerase 2 | chr3:602433-604684
REVERSE LENGTH=1036
Length=1036
Score = 857 bits (464), Expect = 0.0
Identities = 626/706 (89%), Gaps = 4/706 (1%)
Strand=Plus/Plus
Query 169 ATGACCGATGCTAACGATGCCGGAATGGATGCTGTTCAGAGACGACTCATGTTTGAGGAC 228
||||| ||| |||| ||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 190 ATGACAGATACTAAAGATGCTGGTATGGATGCTGTTCAGAGACGTCTCATGTTTGAGGAT 249
Query 229 GAATGCATTCTCGTTGATGAAAATGATCGTGTGGTTGGCCATGACA-CTAAATATAACTG 287
||||||||||| |||||||||| ||||||||| || || ||||||| | || ||||| ||
Sbjct 250 GAATGCATTCTTGTTGATGAAACTGATCGTGTTGTGGGGCATGACAGC-AAGTATAATTG 308
Query 288 TCATCTGATGGAAAAGATTGAAGCTGAGAATTTACTTCACAGAGCTTTCAGTGTGTTTTT 347
||||||||||||||| |||||||| ||||||| || ||||| ||||| ||||| |||||
Sbjct 309 TCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTAGTGTATTTTT 368
Query 348 ATTCAACTCCAAGTATGAGTTGCTTCTCCAGCAACGTTCAAAAACAAAGGTTACTTTCCC 407
||||||||| |||||||||||||||||||||||| | ||||| ||||||||||| |||||
Sbjct 369 ATTCAACTCGAAGTATGAGTTGCTTCTCCAGCAAAGGTCAAACACAAAGGTTACGTTCCC 428
Query 408 ACTTGTGTGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCTGAGCTTATTGA 467
|| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 429 TCTAGTGTGGACTAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATCCA 488
Query 468 AGAGAGTGTGCTTGGTGTAAGAAATGCTGCACAAAGGAAGCTTCTCGATGAGCTCGGGAT 527
|| | || || ||||| || |||||||||||||| ||||||||||||||||| || ||
Sbjct 489 GGACAATGCACTAGGTGTGAGGAATGCTGCACAAAGAAAGCTTCTCGATGAGCTTGGTAT 548
Query 528 AGTAGCTGAAGATGTACCAGTCAATGAGTTCACTCCCTTGGGACGCATGCTTTACAAGGC 587
||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||
Sbjct 549 TGTAGCTGAAGATGTACCAGTCGATGAGTTCACTCCCTTGGGACGTATGCTGTACAAGGC 608
Query 588 ACCTTCTGATGGAAAATGGGGAGAGCACGAACTTGACTATC-TACTTTTCATCGTGCGGG 646
||||||||||| |||||||||||||| |||||||| || | | || ||||||||||| |
Sbjct 609 TCCTTCTGATGGCAAATGGGGAGAGCATGAACTTGATTA-CTTGCTCTTCATCGTGCGAG 667
Query 647 ATGTGAAGCTTGAACCAAACCCGGATGAAGTGGCTGAGATCAAGTATGTGAGCAGGGAAG 706
| |||||| || |||||||||| |||||||| ||||||||||||||||||||| ||||||
Sbjct 668 ACGTGAAGGTTCAACCAAACCCAGATGAAGTAGCTGAGATCAAGTATGTGAGCCGGGAAG 727
Query 707 AGCTTAAGGAGCTGGTGAAGAAAGCAGATGCAGGCGATGAAGCTGTGAAACTATCTCCAT 766
|||| ||||||||||||||||||||||||||||| || |||| | ||||||| || ||||
Sbjct 728 AGCTGAAGGAGCTGGTGAAGAAAGCAGATGCAGGTGAGGAAGGTTTGAAACTGTCACCAT 787
Query 767 GGTTTAGATTGGTGGTGGACAATTTCTTGATGAAGTGGTGGGATCATGTTGAGAAAGGAA 826
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 GGTTCAGATTGGTGGTGGACAATTTCTTGATGAAGTGGTGGGATCATGTTGAGAAAGGAA 847
Query 827 CTCTCATTGAAGCTGCAGACATGAAAACCATTCACAAGCTCTGAAC 872
|| | |||||||| ||||||||||||||| ||||| ||||||||
Sbjct 848 CTTTGGTTGAAGCTATAGACATGAAAACCATCCACAAACTCTGAAC 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5