BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488496 Length=978 Score E Sequences producing significant alignments: (Bits) Value AT5G16440.1 | Symbols: IPP1 | isopentenyl diphosphate isomerase... 1546 0.0 AT3G02780.1 | Symbols: IPP2, IPIAT1, IDI2 | isopentenyl pyropho... 857 0.0 > AT5G16440.1 | Symbols: IPP1 | isopentenyl diphosphate isomerase 1 | chr5:5371627-5373735 FORWARD LENGTH=1174 Length=1174 Score = 1546 bits (837), Expect = 0.0 Identities = 937/985 (95%), Gaps = 7/985 (1%) Strand=Plus/Plus Query 1 ATGTCTACTGCTTCACTATTTAGcttcccttcatttcatctcagatccctcctt-cttc- 58 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 139 ATGTCTACTGCTTCACTATTTAGCTTCCCTTCATTTCATCTCAGATCCCTCCTTCCTTCT 198 Query 59 ctctc-tcttcttcttcttcctcctcttcccgatttgcccctctccgtctttctgcgatc 117 ||||| |||||||||||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct 199 CTCTCTTCTTCTTCTTCTTCTTCCTCTTCCCGATTTGCCCCTCCCCGTCTTTCTCCGATC 258 Query 118 cgatctcc-G-G-CGAGGTCTCACCTGTCTTTTCGCACTTTCTCAGCCGTCACCATGACC 174 |||||||| | | ||||| |||| |||||| ||||| ||||||||||||||||||||||| Sbjct 259 CGATCTCCGGCGCCGAGGACTCAGCTGTCTGTTCGCGCTTTCTCAGCCGTCACCATGACC 318 Query 175 GATGCTAACGATGCCGGAATGGATGCTGTTCAGAGACGACTCATGTTTGAGGACGAATGC 234 ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 319 GATTCTAACGATGCTGGAATGGATGCTGTTCAGAGACGACTCATGTTTGAAGACGAATGC 378 Query 235 ATTCTCGTTGATGAAAATGATCGTGTGGTTGGCCATGACACTAAATATAACTGTCATCTG 294 ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct 379 ATTCTCGTTGATGAAAATGATCGTGTGGTGGGACATGACACTAAGTATAACTGTCATCTG 438 Query 295 ATGGAAAAGATTGAAGCTGAGAATTTACTTCACAGAGCTTTCAGTGTGTTTTTATTCAAC 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 439 ATGGAAAAGATTGAAGCTGAGAATTTACTTCACAGAGCTTTCAGTGTGTTTTTATTCAAC 498 Query 355 TCCAAGTATGAGTTGCTTCTCCAGCAACGTTCAAAAACAAAGGTTACTTTCCCACTTGTG 414 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 499 TCCAAGTATGAGTTGCTTCTCCAGCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGTG 558 Query 415 TGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCTGAGCTTATTGAAGAGAGT 474 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 559 TGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCCGAGCTTATTGAAGAGAAT 618 Query 475 GTGCTTGGTGTAAGAAATGCTGCACAAAGGAAGCTTCTCGATGAGCTCGGGATAGTAGCT 534 |||||||||||||||||||| ||||||||||||||| ||||||||||||| || ||||| Sbjct 619 GTGCTTGGTGTAAGAAATGCCGCACAAAGGAAGCTTTTCGATGAGCTCGGTATTGTAGCA 678 Query 535 GAAGATGTACCAGTCAATGAGTTCACTCCCTTGGGACGCATGCTTTACAAGGCACCTTCT 594 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 679 GAAGATGTACCAGTCGATGAGTTCACTCCCTTGGGACGCATGCTTTACAAGGCACCTTCT 738 Query 595 GATGGAAAATGGGGAGAGCACGAACTTGACTATCTACTTTTCATCGTGCGGGATGTGAAG 654 ||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 739 GATGGGAAATGGGGAGAGCACGAAGTTGACTATCTACTCTTCATCGTGCGGGATGTGAAG 798 Query 655 CTTGAACCAAACCCGGATGAAGTGGCTGAGATCAAGTATGTGAGCAGGGAAGAGCTTAAG 714 ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 799 CTTCAACCAAACCCAGATGAAGTGGCTGAGATCAAGTACGTGAGCAGGGAAGAGCTTAAG 858 Query 715 GAGCTGGTGAAGAAAGCAGATGCAGGCGATGAAGCTGTGAAACTATCTCCATGGTTTAGA 774 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 859 GAGCTGGTGAAGAAAGCAGATGCTGGCGATGAAGCTGTGAAACTATCTCCATGGTTCAGA 918 Query 775 TTGGTGGTGGACAATTTCTTGATGAAGTGGTGGGATCATGTTGAGAAAGGAACTCTCATT 834 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 919 TTGGTGGTGGATAATTTCTTGATGAAGTGGTGGGATCATGTTGAGAAAGGAACTATCACT 978 Query 835 GAAGCTGCAGACATGAAAACCATTCACAAGCTCTGAACTTACCAGAAGTTTTGGATCTTC 894 |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 979 GAAGCTGCAGACATGAAAACCATTCACAAGCTCTGAACTTTCCATAAGTTTTGGATCTTC 1038 Query 895 CCCTTCTCATAATAAAATTAAAAAATGAGACTTT-ATTGATTTCAGACAAAACTGGCAAC 953 |||||| |||||||||||||| | |||||||||| ||||||| ||||||||||||||||| Sbjct 1039 CCCTTCCCATAATAAAATTAAGAGATGAGACTTTTATTGATTACAGACAAAACTGGCAAC 1098 Query 954 AACATCTCTTCCTAGGAtttttttt 978 || |||| ||||||||||||||||| Sbjct 1099 AAAATCTATTCCTAGGATTTTTTTT 1123 > AT3G02780.1 | Symbols: IPP2, IPIAT1, IDI2 | isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 | chr3:602433-604684 REVERSE LENGTH=1036 Length=1036 Score = 857 bits (464), Expect = 0.0 Identities = 626/706 (89%), Gaps = 4/706 (1%) Strand=Plus/Plus Query 169 ATGACCGATGCTAACGATGCCGGAATGGATGCTGTTCAGAGACGACTCATGTTTGAGGAC 228 ||||| ||| |||| ||||| || |||||||||||||||||||| |||||||||||||| Sbjct 190 ATGACAGATACTAAAGATGCTGGTATGGATGCTGTTCAGAGACGTCTCATGTTTGAGGAT 249 Query 229 GAATGCATTCTCGTTGATGAAAATGATCGTGTGGTTGGCCATGACA-CTAAATATAACTG 287 ||||||||||| |||||||||| ||||||||| || || ||||||| | || ||||| || Sbjct 250 GAATGCATTCTTGTTGATGAAACTGATCGTGTTGTGGGGCATGACAGC-AAGTATAATTG 308 Query 288 TCATCTGATGGAAAAGATTGAAGCTGAGAATTTACTTCACAGAGCTTTCAGTGTGTTTTT 347 ||||||||||||||| |||||||| ||||||| || ||||| ||||| ||||| ||||| Sbjct 309 TCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTAGTGTATTTTT 368 Query 348 ATTCAACTCCAAGTATGAGTTGCTTCTCCAGCAACGTTCAAAAACAAAGGTTACTTTCCC 407 ||||||||| |||||||||||||||||||||||| | ||||| ||||||||||| ||||| Sbjct 369 ATTCAACTCGAAGTATGAGTTGCTTCTCCAGCAAAGGTCAAACACAAAGGTTACGTTCCC 428 Query 408 ACTTGTGTGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCTGAGCTTATTGA 467 || |||||||| ||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 429 TCTAGTGTGGACTAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATCCA 488 Query 468 AGAGAGTGTGCTTGGTGTAAGAAATGCTGCACAAAGGAAGCTTCTCGATGAGCTCGGGAT 527 || | || || ||||| || |||||||||||||| ||||||||||||||||| || || Sbjct 489 GGACAATGCACTAGGTGTGAGGAATGCTGCACAAAGAAAGCTTCTCGATGAGCTTGGTAT 548 Query 528 AGTAGCTGAAGATGTACCAGTCAATGAGTTCACTCCCTTGGGACGCATGCTTTACAAGGC 587 ||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| Sbjct 549 TGTAGCTGAAGATGTACCAGTCGATGAGTTCACTCCCTTGGGACGTATGCTGTACAAGGC 608 Query 588 ACCTTCTGATGGAAAATGGGGAGAGCACGAACTTGACTATC-TACTTTTCATCGTGCGGG 646 ||||||||||| |||||||||||||| |||||||| || | | || ||||||||||| | Sbjct 609 TCCTTCTGATGGCAAATGGGGAGAGCATGAACTTGATTA-CTTGCTCTTCATCGTGCGAG 667 Query 647 ATGTGAAGCTTGAACCAAACCCGGATGAAGTGGCTGAGATCAAGTATGTGAGCAGGGAAG 706 | |||||| || |||||||||| |||||||| ||||||||||||||||||||| |||||| Sbjct 668 ACGTGAAGGTTCAACCAAACCCAGATGAAGTAGCTGAGATCAAGTATGTGAGCCGGGAAG 727 Query 707 AGCTTAAGGAGCTGGTGAAGAAAGCAGATGCAGGCGATGAAGCTGTGAAACTATCTCCAT 766 |||| ||||||||||||||||||||||||||||| || |||| | ||||||| || |||| Sbjct 728 AGCTGAAGGAGCTGGTGAAGAAAGCAGATGCAGGTGAGGAAGGTTTGAAACTGTCACCAT 787 Query 767 GGTTTAGATTGGTGGTGGACAATTTCTTGATGAAGTGGTGGGATCATGTTGAGAAAGGAA 826 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 788 GGTTCAGATTGGTGGTGGACAATTTCTTGATGAAGTGGTGGGATCATGTTGAGAAAGGAA 847 Query 827 CTCTCATTGAAGCTGCAGACATGAAAACCATTCACAAGCTCTGAAC 872 || | |||||||| ||||||||||||||| ||||| |||||||| Sbjct 848 CTTTGGTTGAAGCTATAGACATGAAAACCATCCACAAACTCTGAAC 893 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47873142091 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5