BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488497
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16450.1 | Symbols: | Ribonuclease E inhibitor RraA/Dimethy... 1083 0.0
AT3G02770.1 | Symbols: | Ribonuclease E inhibitor RraA/Dimethy... 582 1e-165
> AT5G16450.1 | Symbols: | Ribonuclease E inhibitor RraA/Dimethylmenaquinone
methyltransferase | chr5:5373883-5375459 FORWARD
LENGTH=847
Length=847
Score = 1083 bits (586), Expect = 0.0
Identities = 693/741 (94%), Gaps = 22/741 (3%)
Strand=Plus/Plus
Query 69 TATTATGGAGAAGTGAGAGCAAGTTTTGGAC-TTTGATCTCCTTTAGAATCACTTAT-TC 126
|||||||||||||||||||||||| || | | ||||| | | || | ||||| |
Sbjct 105 TATTATGGAGAAGTGAGAGCAAGTGTTAG-CTTTTGA--T-C-TT----T--CTTATAT- 152
Query 127 TCTTCTCTGAAATAGTAACAGACTGTGAAGAGAGTTTCTCTGCATCTGAATTTTGTCTGA 186
|||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||||
Sbjct 153 TCTTCTCTGAAATAGTAACACACTGTGAAGAGTTTTTC-CTACATCTGAATTTTGTCTGA 211
Query 187 TCCAGGGAAACGAAGAAAATGGCGTTTGTGACAACTGCGGAAGTTTGTGACGCGAATCAA 246
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 TCCAGGAAAAAGAAGAAAATGGCGTTTGTGACAACTGCGGAAGTTTGTGACGCGAATCAA 271
Query 247 GAGCTGATTCGGAGTGGTCAGCTACGAGCTTTGCAACCCATTTTCCAGATTTATGGCCGT 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 GAGCTGATTCGGAGTGGTCAGCTACGAGCTTTGCAACCCATTTTCCAGATTTATGGCCGT 331
Query 307 CGACAAATATTCTCAGGACCAGTTGTTACTGTCAAAGTATTTGAAGACAATGGCTTAATC 366
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 332 CGACAAATATTCTCAGGACCAGTTGTCACTGTCAAAGTTTTTGAAGACAATGGCTTAATC 391
Query 367 CGTCAATTCATCGAGGAGAAAGGAAACGGTAGAGTTCTTGTGGTGGATGGTGGAGGAAGT 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 392 CGTCAATTCATCGAGGAGAAAGGAAACGGTAGAGTTCTTGTGGTGGATGGTGGAGGGAGT 451
Query 427 CAACGATGTGCAATACTCGGAGGTAACCCCGTGGTTCAAGCTCAGAACAACGGATGGGCG 486
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 452 CAACGATGTGCAATACTCGGAGGTAACCCCGTTGTTCAAGCTCAGAACAACGGATGGGCA 511
Query 487 GGAATCGTTGTGAACGGATGCATCAGAGACGTCGATGAGATCAACGGTTGTGATATCGGA 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 GGAATCGTTGTGAACGGATGCATCAGAGACGTCGATGAGATCAACGGTTGTGATATCGGA 571
Query 547 GTGAGAGCTTTGGCCTCTCATCCGATAAAGGCGAGTAA-AAAGGGACTTGGAGAACAACG 605
||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 572 GTGAGAGCTTTGGCCTCTCATCCGATAAAAGCGAGTAAGAAAGG-ACTTGGAGAACAACG 630
Query 606 AGTTCCGGTTAACATTGCAGGGACTCGGATTTGTGATGGAGAATGGCTTTATGCAGATAC 665
||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 631 AGTTCCGGTAAATATCGCAGGGACTCGGATTTGTGATGGTGAATGGCTTTATGCAGATAC 690
Query 666 TGATGGGATTCTTGTCTCCCAGATTGAGTTATCCGTTTAAGAAAAAAGGCTTTGATCAGT 725
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 691 TGATGGGATTCTTGTCTCCCAAATTGAGTTATCCGTTTAATAAAAAAGGCTTTGATCAGT 750
Query 726 TAC-aaaaaaaaaaa----GAACTTGGTTTGTGTTCTTCTTCTTTTTACTTCAGAGATTG 780
||| ||||||||||| |||| |||||||||||| ||||||| |||||| ||||||||
Sbjct 751 TACCAAAAAAAAAAAAACAGAACGTGGTTTGTGTTCATCTTCTTGTTACTTAAGAGATTG 810
Query 781 ATAAATTATAATGGAAAATAA 801
| ||||||||||||||||||
Sbjct 811 TTGAATTATAATGGAAAATAA 831
Score = 89.8 bits (48), Expect = 4e-17
Identities = 48/48 (100%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1 TCTCATGATTCCTTGCTCTAAGCTTCACCACTACCTCTGATCTGATTT 48
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCATGATTCCTTGCTCTAAGCTTCACCACTACCTCTGATCTGATTT 48
> AT3G02770.1 | Symbols: | Ribonuclease E inhibitor RraA/Dimethylmenaquinone
methyltransferase | chr3:600893-602259 REVERSE
LENGTH=761
Length=761
Score = 582 bits (315), Expect = 1e-165
Identities = 457/525 (87%), Gaps = 12/525 (2%)
Strand=Plus/Plus
Query 187 TCCAGG-GA-AACGAAGAAAATGGCGTTTGTGACAACTGCGGAAGTTTGTGACGCGAATC 244
|||||| || || ||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 119 TCCAGGTGAGAA-GAA-AAAATGGCGTTTGTGACCACTGCGGAAGTGTGTGACGCGAATC 176
Query 245 AAGAGCTGATTCGGAGTGGTCAGCTACGAGCTTTGCAACCCATTTTCCAGATTTATGGCC 304
||||| ||||||| ||||| ||||| |||||| |||||||| |||| ||||||||||| |
Sbjct 177 AAGAGATGATTCGAAGTGGCCAGCTCCGAGCTCTGCAACCCGTTTTTCAGATTTATGGTC 236
Query 305 GTCGACAAATATTCTCAGGACCAGTTGTTACTGTCAAAGTATTTGAAGACAATGGCTTAA 364
|||| |||||||| ||||| ||||| |||||||| ||||| |||||||||||||||||||
Sbjct 237 GTCGTCAAATATTTTCAGGTCCAGTAGTTACTGTTAAAGTCTTTGAAGACAATGGCTTAA 296
Query 365 TCCGTCAATTCATCGAGGAGAAAGGAAACGGTAGAGTTCTTGTGGTGGATGGTGGAGGAA 424
||||||| ||| |||| |||||||| || ||||||||||||||||||||||||||||| |
Sbjct 297 TCCGTCACTTCCTCGAAGAGAAAGGCAATGGTAGAGTTCTTGTGGTGGATGGTGGAGGGA 356
Query 425 GTCAACGATGTGCAATACTCGGAGGTAACCCCGTGGTTCAAGCTCAGAACAACGGATGGG 484
|| ||| ||||| ||||| ||||| ||||| || || ||||| ||||||||||||||||
Sbjct 357 GTTTACGCTGTGCGATACTAGGAGGAAACCCGGTCGTACAAGCGCAGAACAACGGATGGG 416
Query 485 C-GGGAATCGTTGTGAACGGATGCATCAGAGACGTCGATGAGATCAACGGTTGTGATATC 543
| |||| || | ||||| ||||||||||||||||| ||||||||||| ||||| || ||
Sbjct 417 CAGGGA-TCATAGTGAATGGATGCATCAGAGACGTTGATGAGATCAATGGTTGCGACATT 475
Query 544 GGAGTGAGAGCTTTGGCCTCTCATCCGATAAAGGCGAGTAA-AAAGGGACTTGGAGAACA 602
|||||||||||||| || |||||||| |||||||| ||||| ||||| |||||| |||||
Sbjct 476 GGAGTGAGAGCTTTAGCTTCTCATCCAATAAAGGCTAGTAAGAAAGG-ACTTGGTGAACA 534
Query 603 ACGAGT-TCCGGTT-AACATTGCAGGGACTCGGATTTGTGATGGAGAATGGCTTTATGCA 660
| |||| || || ||||||||||| |||||||| || ||||| |||||||||||||||
Sbjct 535 AAGAGTCTCT--TTGAACATTGCAGGCACTCGGATATGCGATGGCGAATGGCTTTATGCA 592
Query 661 GATACTGATGGGATTCTTGTCTCCCAGATTGAGTTATCCGTTTAA 705
||||||||||| || ||||| || |||||||| ||||||||||||
Sbjct 593 GATACTGATGGTATCCTTGTTTCTCAGATTGAATTATCCGTTTAA 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5