BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488499

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G16453.1 | Symbols:  | Defensin-like (DEFL) family protein |...   510    3e-144


> AT5G16453.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr5:5375455-5375999 REVERSE LENGTH=435
Length=435

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 340/370 (92%), Gaps = 7/370 (2%)
 Strand=Plus/Plus

Query  1    TCATAAACAAATCTTGTAGAGAATTGAAAGATAAAATAAAAATGGTCTCCTCAAAATTCG  60
            |||||||  ||||||||||||  |||||||||   | |||||||| ||||||||||||||
Sbjct  45   TCATAAAGTAATCTTGTAGAG--TTGAAAGAT--TA-AAAAATGGCCTCCTCAAAATTCG  99

Query  61   TTATTTTTGCTATCCTAGCTCTCTCTCTTCTACTTGCAGGTACTGAAGCAAGAAAGACCG  120
            || ||||||||||||||||||| |||||||||||| | ||||| ||||||||||||||||
Sbjct  100  TTCTTTTTGCTATCCTAGCTCTGTCTCTTCTACTTTCCGGTACCGAAGCAAGAAAGACCG  159

Query  121  TGTGGCCTAGCAGCGAATTAGACCCAAAGTGTTGCAGCCCTCAGCCAGAATTTGGTAAAT  180
            ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||
Sbjct  160  TGTGGCCTAGCAGCGAATTAGACCCAAAGTGTTGCAGCAATCAGCCAGAATTTGGTATAT  219

Query  181  GTGAAACAAAAGAAGATGATCAAAAATGCACTCAGATGTGCCTTGATGGTTGTCCCACTA  240
            ||||  |||||||||||||| ||| |||| | |||||||| || ||||||||||||||||
Sbjct  220  GTGATTCAAAAGAAGATGATGAAAGATGCGCCCAGATGTGTCTGGATGGTTGTCCCACTA  279

Query  241  ACAAAGGTGGTGGCTGCCAACCTATTACTGAAGCCCCTGGTGCTGTTTGTTCTTGTTACT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  280  ACAAAGGTGGTGGCTGCCAACCTATTACTGAAGCCCCTGGTGCTGTTTGTTCTTGTTACT  339

Query  301  GCGCTTAACTCTTCTTCTTGGCTTTATTGATTCATAAGTAAAAAAGTTTA-TTTTTGTAT  359
            |||||||||||||||||||||||||||||||||||||| |||||| | || |||||||||
Sbjct  340  GCGCTTAACTCTTCTTCTTGGCTTTATTGATTCATAAGGAAAAAA-TATAGTTTTTGTAT  398

Query  360  CCAGCTTCAA  369
            ||| ||||||
Sbjct  399  CCATCTTCAA  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5