BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488500
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16460.1 | Symbols: | Putative adipose-regulatory protein (... 1722 0.0
> AT5G16460.1 | Symbols: | Putative adipose-regulatory protein
(Seipin) | chr5:5376961-5378533 REVERSE LENGTH=1231
Length=1231
Score = 1722 bits (932), Expect = 0.0
Identities = 1136/1230 (92%), Gaps = 32/1230 (3%)
Strand=Plus/Plus
Query 1 GAGAATCCTCCCAAACAAGACAATGAAACAACAGGACAACGAACTCAAAATCCCCGAACC 60
||||||||||| |||||| ||||||||| |||| |||||| ||||||||||||| |||||
Sbjct 3 GAGAATCCTCCAAAACAAAACAATGAAAGAACAAGACAACCAACTCAAAATCCCTGAACC 62
Query 61 ATTACGAGCCGACTGGTTCATGGTTCTAGTTACCATCCAAGCTGATCTAATCTACAACGC 120
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 63 ATTACGAGCTGACTGGTTCATGGTTCTAGTCACCATCCAAGCTGATCTAATCTACAACGC 122
Query 121 ACTCGTGGTATTATCCTCACCTTTCTTTCTCCTCTACCGCTCCTACCGCCGCGCAGTCGC 180
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 123 ACTCGTGGTATTATCCTCACCTTTCTTTCTCCTATACCGCTCTTACCGCCGCGCAGTCGT 182
Query 181 TACTGTCTCCGCGGCGGAAAAAGCGGTTAAACGGGCTCCCTCCCGGATAGCGGGTGGTGC 240
||| |||||||| || ||||||||||||||||| ||||| | | |||||| ||||||||
Sbjct 183 TACCGTCTCCGCAGCAGAAAAAGCGGTTAAACGTGCTCCAGCGCAGATAGCTGGTGGTGC 242
Query 241 GGGGCGGGTTGTTAGGAGGACATGGTTTGGGATATTGGGTGCATGCCACGTGTCAATGGT 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 243 GGGGCGGGTTGTTAGGAGGACATGGTTTGGTATATTGGGTGCATGCCACGTGTCAATGGT 302
Query 301 GATGGTGTTGGCATTGATTTTGGCGGTTGTTATCGGTGTTGGGATTGTGAGTTTGTATGT 360
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 303 AATGGTGTTGGCTTTGATTTTGGCGGTTGTTATTGGTGTTGGGATTGTGAGTTTGTATGT 362
Query 361 AGAAAAGCCGGTGGTTGTGAGAGACAGATTGTTCTTTGATTACACTGAAGAAAACCCAAG 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 363 AGAAAAGCCTGTGGTTGTGAGAGACAGATTGTTCTTTGATTACACTGAAGAAAACCCCAG 422
Query 421 TGCGGTTTTTAGTTTTGATAAGAAGAAGAGATCGTTTAGTGTTCCTGTTGGTCATAACGT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 423 TGCGGTTTTTAGTTTTGATAAGAAGAAGAGATCGTTTAGTGTTCCTGTTGGTCATAGTGT 482
Query 481 TCATGTCTCTTTGGTGCTTTGGATGCCTGAATCTGAAATTAATCGAAGAATTGGGGTGTT 540
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 483 TCATGTCTCTTTAGTGCTTTGGATGCCTGAATCTGAAATTAATCGAAGAATTGGAGTATT 542
Query 541 TCAGTTGAAAGTAGAGCTTTTATCGTTGAAAGGTGAGACAATCGCGAGATCGAGCCAACC 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 543 TCAGTTGAAAGTAGAGCTTTTATCGTTGAAAGGCGAGACAATCGCGAGATCGAGCCAACC 602
Query 601 TTGTATGTTACGGTTCAGAAGCAAACCTATAAGACTTGCACGAACATTTGTGATGAGTGT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TTGTATGTTACGGTTCAGAAGCAAACCTATAAGACTTGCACGAACATTTGTGATGAGTGT 662
Query 661 TCCACTTATAGCCGGAATAGCAAACGAAGCACAAACAATGAGAATCGATGCATTAAAGCA 720
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TCCACTTATAGCCGGGATAGCAAACGAAGCACAAACAATGAGAATCGATGCATTAAAGCA 722
Query 721 CCATGAGAAA-TGGCCAAGGACAAAAGCCGTGAGAGCGACTCTGATTCCGCGTGCACAAA 779
||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 CCAAGAGAAAATG-CCAAGGACAAAAGCCGTGAGAGCGACTCTGATTCCGCGTGCACAAA 781
Query 780 CTTGGACATTGCCTCAGCTATATGAAGCAGAAATCGTTTTAAACTCAAAACCGCCATGGA 839
|| |||||||||||||| ||||||||||||| |||||| |||||||||||||||| ||||
Sbjct 782 CTCGGACATTGCCTCAGTTATATGAAGCAGAGATCGTTATAAACTCAAAACCGCCCTGGA 841
Query 840 CTAAACGAATGGCTTATAATTGGAAATGGACTCTTTGCGTCTGGACTTCAATGTATCTTT 899
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 842 TTAAACGAATGGCTTATAACTGGAAATGGACTCTTTGCGTATGGACTTCAATGTACCTTT 901
Query 900 ACGTCGCTATTTTAACAGCGTTTCTTTGGTATTTTAGACCGGTTTTGTTCCCTTACACTT 959
||||||| ||||| || || ||||||||| |||||||||||||||||||||||||||||
Sbjct 902 ACGTCGCGATTTTGACCGCACTTCTTTGGTGTTTTAGACCGGTTTTGTTCCCTTACACTT 961
Query 960 CCTCAAGATTTACTGCAGAGAGCGAAAACTTAGAGATCGAAGTAGTTGAAGAAGAACAAG 1019
|||||||| | | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 CCTCAAGAACCATTTCGGAGAGCGAAAACTTAGAGATCGAAGTAGTTGAAGAAGAACAAG 1021
Query 1020 AA---GTAATGGAAAGACGACGGAGGGAAAGAAGAAACCAGCCTCGTCAAAGAAGTTTTG 1076
|| || |||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1022 AACAAGTCATGGAAAGACGACGGAGGGAAAGAAGAAACCAGCCTCGTCGAAGAAATTTTG 1081
Query 1077 CTACTACACAGAAAAGTTATACATAGTCACATAAATATTCTTCGTTTTTT-GGG-TCAAA 1134
||||||||||||||||||||||||||| ||| | || | ||||||||||| ||| |||||
Sbjct 1082 CTACTACACAGAAAAGTTATACATAGTAACA-AGAT-T-CTTCGTTTTTTTGGGGTCAAA 1138
Query 1135 TT--AA-----T---A---GTAA-A-TAA----CAAGAAACTCCAGAGAATTGTGAATAC 1175
|| || | | |||| | ||| |||||| || || ||||||||||||||
Sbjct 1139 TTGTAAGAAAGTGGCAATAGTAATAGTAAATAACAAGAA-CTACAAAGAATTGTGAATAC 1197
Query 1176 CTTTTACGGTTT-AAAGTAGTGAGAAGAAG 1204
|||||||||||| ||| |||||||||||||
Sbjct 1198 CTTTTACGGTTTTAAA-TAGTGAGAAGAAG 1226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59136242010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5