BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488501
Length=634
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16470.1 | Symbols: | zinc finger (C2H2 type) family protei... 966 0.0
> AT5G16470.1 | Symbols: | zinc finger (C2H2 type) family protein
| chr5:5379416-5380040 FORWARD LENGTH=625
Length=625
Score = 966 bits (523), Expect = 0.0
Identities = 604/639 (95%), Gaps = 21/639 (3%)
Strand=Plus/Plus
Query 1 CCCAAATCCTTCTCTCTC-AATCACAAAATTAGGGTTAGGGTTTTCAATTCCCCCACCTT 59
|||||||| ||||||||| |||| |||||||||||||||||||||||||||||| |||||
Sbjct 1 CCCAAATCGTTCTCTCTCAAATCGCAAAATTAGGGTTAGGGTTTTCAATTCCCCAACCTT 60
Query 60 GCGAAGTTCTCATTTCTCGTAGCCGCCGCCGCCATCGACGATGACAGGCAAAGCAAAGCC 119
||||| ||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 61 GCGAATTTCTCATTTCTCGTAGCCGCCGCAGCAATCAACGATGACAGGCAAAGCAAAGCC 120
Query 120 AAAGAAGCACACAGCGAAGGAGCTCCAAGCAAAAGCCGATGCAGCGTTGACCAATCGCGG 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 AAAGAAGCACACAGCGAAGGAGCTCCAAGCTAAAGCCGATGCAGCGTTGACCAATCGCGG 180
Query 180 CGGAGGAAAGGCAGGGCTCGCCGATAGAACCGGTAAGGAGAAAGGTGGTCACGCTAAGTA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 TGGAGGAAAGGCAGGGCTCGCCGATAGAACCGGTAAGGAGAAAGGTGGTCACGCAAAGTA 240
Query 240 CGAGTGTCCTCACTGCAAGATCACTGTACCGGATCTAAAGACGATGCAGATCCATCATGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGAGTGTCCTCACTGCAAGATCACTGTACCGGATCTAAAGACGATGCAGATCCATCATGA 300
Query 300 ATCGAAGCATCCAAAGCTGACTTATGAAGAGCCGAGGAATCTTCATGAGGCTTTAGCTGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCGAAGCATCCAAAGCTGACTTATGAAGAGCCGAGGAATCTTCATGAGGCTTTAGCTGC 360
Query 360 TCCTGCTGAATCGTCTAAGCCTAAGCCTGGAATCAGAGGAAGCCTTAAGAAGTGAAGTGA 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCCTGCTGAATCATCTAAGCCTAAGCCTGGAATCAGAGGAAGCCTTAAGAAGTGAAGTGA 420
Query 420 AGATG-TTTGGGGATTGTATCGAATTTCGATTTGAAATTTGTGGTCTTTT-AATGGTGTT 477
||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 AGATGGTTTGGG-ATTGTATCGAATTTCGATTTGAAATTTGTGGTCTTTTTAATGGTGTT 479
Query 478 TTGATGTGAGAATATAAACTTGCGTTGATGATGGATGATGCTTATGTCCATCTTCGTATT 537
||||||||||||||||||||||||||||||||| | || ||||| | | ||||||
Sbjct 480 TTGATGTGAGAATATAAACTTGCGTTGATGATGC-T----CT-ATGTC--T-T-CGTATT 529
Query 538 TTTATGTTATGATCATATAAAA--GTAACTGATATTTATTTTCTTTATAAAATGGTTTGT 595
|||||||||||||||||||||| ||||||||||||| | ||| || |||||||||||
Sbjct 530 TTTATGTTATGATCATATAAAAAAGTAACTGATATTT-T---CTT-ATTAAATGGTTTGT 584
Query 596 TTCTAACTTATGGGTTTCTTTTGATTCTTGTTTCTGGAT 634
||||||||||| |||||||||||||||||||||||||||
Sbjct 585 TTCTAACTTATTGGTTTCTTTTGATTCTTGTTTCTGGAT 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30592595523
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5