BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488502
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16480.1 | Symbols: | Phosphotyrosine protein phosphatases ... 1221 0.0
AT3G02800.1 | Symbols: | Tyrosine phosphatase family protein |... 483 2e-135
> AT5G16480.1 | Symbols: | Phosphotyrosine protein phosphatases
superfamily protein | chr5:5381113-5382897 REVERSE LENGTH=1115
Length=1115
Score = 1221 bits (661), Expect = 0.0
Identities = 947/1072 (88%), Gaps = 72/1072 (7%)
Strand=Plus/Plus
Query 1 AtttttttCCAAATCCGCAGAAATCTC-T-ACCAAAACACTCCTAAATCTTCGTCATC-T 57
||||||||||||||||| | ||||||| | || |||| |||||| ||||||||||||| |
Sbjct 17 ATTTTTTTCCAAATCCGAAAAAATCTCTTAACAAAAAAACTCCTTAATCTTCGTCATCTT 76
Query 58 TTTGTCTCTTTATaaaaaagattaaataaaaaaaaaaaaCCACTTGATGATTATCCCATA 117
||||||||||| | ||||| | | ||| ||| ||||||||||||||||||||
Sbjct 77 TTTGTCTCTTT-TTAAAAA-A-T-AAT------TAAACCCCACTTGATGATTATCCCATT 126
Query 118 AACCATATAAA--------------TTTTTGTTCAATC-AAtctctctctctctATTGAT 162
|| ||| |||| ||||||||||| | ||||||| ||||||| | |||
Sbjct 127 AATCATTTAAAGGTTTTTTTTTTTCTTTTTGTTCAA-CGAATCTCTATCTCTCTCTAGAT 185
Query 163 TTTGGGGATTTTG--CTCTCT--CT-T-TG--------T--TGCTCGTATCTTTCTGTTT 206
||||||||||||| |||||| || | || | |||||||| |||||||| |
Sbjct 186 TTTGGGGATTTTGCTCTCTCTCCCTCTCTGTCTCTCTTTGGTGCTCGTAGCTTTCTGTCT 245
Query 207 CCCAATAGAGAGACGGAGGGAGAGAGAAA--TTGATGGGCTTAATCGT-G--GATGATAG 261
|||||| |||||| ||||||||| ||||| | |||||||||||| || | |||||||
Sbjct 246 CCCAATTGAGAGAAGGAGGGAGATAGAAACGTCGATGGGCTTAATTGTGGATGATGATAA 305
Query 262 CGACGGAGAAGTTTTGATCCCGCCGCCGAATTTTTCGATGGTAGAAGACGGGATTTATCG 321
||| |||||||||||||| ||||||||||||||||| ||||||||||| | ||||| ||
Sbjct 306 CGATGGAGAAGTTTTGATTCCGCCGCCGAATTTTTCAATGGTAGAAGATGAAATTTACCG 365
Query 322 ATCTGGGTTTCCTCAGCTGGAGAATTTCGGATTCTTATCAACCCTAAATCTTCGATCCAT 381
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 ATCTGGGTTTCCTGAGCTGGAGAATTTCGGATTCTTATCAACCCTAAATCTTCGATCCAT 425
Query 382 CATTTATCTGTGTCCTGAACCATACCCTGAGGACAATCTCAAGTCTCTT-CAATCCAACA 440
|||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct 426 CATTTATCTGTGTCCTGAGCCATACCCTGAGGACAATCTCAAGTCTCTTGC-ATCCAACA 484
Query 441 ACATTAAGCTTTTTCAGTTCGGGATTGAAGGCAAAACGGATCCTCCAACTCCTATGCCAA 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 ACATTAAGCTTTTCCAGTTCGGGATTGAAGGCAAAACGGATCCTCCAACTCCTATGCCAA 544
Query 501 AGGATACAGTGTTGAGTGCTCTTAGAGTACTAGTTGATGTTCGAAATCATCCAATTCTCA 560
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 545 AGGATACAGTGTTGAGTGCTCTTAGAGTACTAGTTGATGTTCGAAATCATCCAATTCTTA 604
Query 561 TCCACTGTAAGCGCGGGAAGCATAGGACAGGTTGTCTTGTGGGATGCTTGAGGAAAGTGC 620
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 TCCACTGTAAGCGCGGAAAGCATAGGACAGGTTGTCTTGTGGGATGCTTGAGGAAAGTGC 664
Query 621 AAAACTGGTGTTTGTCATCGGTTCTTGAGGAATATCAAAAGTGTGCGGGTTTGAAATGGA 680
| |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 665 AGAACTGGTGCTTGTCATCGGTTCTCGAGGAATACCAGAAGTGTGCGGGTTTGAAATGGA 724
Query 681 GACAAAGAGATTTAAGGTTCATAGAGGATTTTGATGTGCTCAGATTGAAGCAATGTCTAT 740
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 725 GACAAAGAGATTTAAGGTTCATTGAGGATTTCGATGTGCTCAGATTGAAGCAATGTCTAT 784
Query 741 ACAGCATTATCTATCAGTACAATGGGTATGGTCTCAAGAGAAGAAAGTTGCTGTATCAAG 800
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 ACAGCATCATATATCAGTACAATGGGTATGGTCTCAAGAGAAGAAAGTTGCTGTATCAAG 844
Query 801 AAGAGAATGTTGTTCAAGAACAGCAAAAACCTCAAGCCACCAAAGGGTGAAGAAAGAGAT 860
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 845 AAGAGAATGTTGTTCAAGAACAGCAAAAACCTCAAGCCACCAAAGGATAAAGAAAGAGAT 904
Query 861 TTGAAATCGGAtttttttttGTTTCTTTACATTTTGTCGTGTTGATGATGATGATTCTTT 920
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 905 TTGAAATCGGATTTTTTTTTGTTTCTTTACATTTTGTCGTGATGATGATGATGATTTTTT 964
Query 921 TGAGAATAGGATAG------AAAA---T--AGA-----G-G-ATTTGATTTGGTCTGTCT 962
|||||||||||||| |||| | ||| | | |||||||||||||| |||
Sbjct 965 TGAGAATAGGATAGTTCTTTAAAAAGCTTGAGAAAACAGAGGATTTGATTTGGTCTCTCT 1024
Query 963 ATCttttttctttttACAGTTAGAGAAATTTACAGATTGATTCTTAATTGTT 1014
| | |||| |||| || ||||||||||||||||||||||||||||||||||
Sbjct 1025 CTATCTTTT-TTTT-ACGGTTAGAGAAATTTACAGATTGATTCTTAATTGTT 1074
> AT3G02800.1 | Symbols: | Tyrosine phosphatase family protein
| chr3:606471-607886 REVERSE LENGTH=961
Length=961
Score = 483 bits (261), Expect = 2e-135
Identities = 471/570 (83%), Gaps = 24/570 (4%)
Strand=Plus/Plus
Query 253 GGATGAT-AGCGACGGAGAAGTTTTGATC-CCGCCGCCGAATTTTTCGATGGTAGAAGAC 310
||||||| | | |||| || ||||| | | |||||| ||||||| |||||||| |||||
Sbjct 203 GGATGATCA-CAACGGTGATGTTTT-AGCGCCGCCGTCGAATTTCTCGATGGTTGAAGAT 260
Query 311 GGGATTTATCGATCTGGGTTTCCTC-AGCTGGAGAATTTCGGATT-CTTATCAACCCTAA 368
|| |||||||||||||||||||||| | || ||||||||| | || |||| ||||||||
Sbjct 261 GGAATTTATCGATCTGGGTTTCCTCGACCT-GAGAATTTCAGTTTCCTTA-AAACCCTAA 318
Query 369 ATCTTCGATCCATCATTTATCTGTGTCCTGAACCATACCCTGAGGACAATCTCAAGTCTC 428
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 319 ATCTTCGTTCCATCATTTATCTGTGTCCTGAACCATACCCAGAGGAGAATCTCAAGTTTC 378
Query 429 TTCAATCCAACAACATTAAGCTTTTTCAGTTCGGGATTGAAGGCAAAACGGATCCTCCAA 488
|| | | |||||||||||||||| || || || || ||||||||||||||||||||||
Sbjct 379 TTGAGGCTAACAACATTAAGCTTTACCAATTTGGAATCGAAGGCAAAACGGATCCTCCAA 438
Query 489 CTCCTATGCCAAAGGATACAGTGTTG-AGTGCTCTTAGAGTACTAGTTGATGTTCGAAAT 547
||||||||||||| |||||||| ||| | |||||| | ||| |||||||||| ||||
Sbjct 439 CTCCTATGCCAAAAGATACAGTTTTGGA-TGCTCTCAAAGTTTTAGTTGATGTGAGAAAC 497
Query 548 CATCCAATTCTCATCCACTGTAAGCGCGGGAAGCATAGGACAGGTTGTCTTGTGGGATGC 607
|||||||||||||| || || || |||||||||||||||||||||||||| |||||||||
Sbjct 498 CATCCAATTCTCATACATTGCAAACGCGGGAAGCATAGGACAGGTTGTCTAGTGGGATGC 557
Query 608 TTGAGGAAAGTGCAAAACTGGTGTTTGTCATCGGTTCTTGAGGAATATCAAAAGTGTGCG 667
|| || ||||| || | ||||||||| |||||||| || ||||| || || ||| |||
Sbjct 558 TTAAGAAAAGTTCAGAGCTGGTGTTTATCATCGGTGCTCGAGGAGTACCAGAAGAACGCG 617
Query 668 GGTTTGAAATGGAGACAAAGAGATTT-AAGGTTCATAGAGG-ATTTTGATGT-GCTCAGA 724
||||| |||||||||||||| || || || || ||||||| |||| ||| | | | ||
Sbjct 618 GGTTTAAAATGGAGACAAAGGGACTTGAATTTT-ATAGAGGCATTT-GATATAG-TGAGC 674
Query 725 TTGA-AGCAATGTCTATACAGCATTATCTATCAGTA-CAATGGGTATGGTCT-CAAGAGA 781
|||| | || ||||| | ||||| || |||||||| || || ||||| || ||||||
Sbjct 675 TTGAGA-CAGTGTCTCTTGAGCATCATGTATCAGTATCAC-GGTTATGG-CTTCAAGAGG 731
Query 782 AGAAAGTTG-CTGTATCAAGAAGAGAATGT 810
|||| |||| | ||| |||||||||||||
Sbjct 732 AGAAGGTTGGCA-TATGAAGAAGAGAATGT 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5