BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488506
Length=1466
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16510.1 | Symbols: | Alpha-1,4-glucan-protein synthase fam... 2049 0.0
> AT5G16510.1 | Symbols: | Alpha-1,4-glucan-protein synthase family
protein | chr5:5392793-5394568 FORWARD LENGTH=1417
Length=1417
Score = 2049 bits (1109), Expect = 0.0
Identities = 1211/1260 (96%), Gaps = 7/1260 (1%)
Strand=Plus/Plus
Query 153 GAAAAAAGCTTTTGAAGATCAGCCTAGAAGTTATCTCTCAT-ACTGTTTAGAAGATCGTT 211
||| |||||||||||||||||||||| |||| ||||||||| |||| ||| ||||| |||
Sbjct 74 GAAGAAAGCTTTTGAAGATCAGCCTAAAAGTGATCTCTCATAACTGCTTAAAAGATTGTT 133
Query 212 GAAAATCGAAGATGTCTTCGGCCGAGATAAACAAGAATGAAGTCGACATTGTCATTGGGG 271
|||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 134 GAAACTCGAAGATGTCTTTGGCCGAGATAAACAAGAATGAAGTCGACATTGTTATTGGGG 193
Query 272 CTCTTAATGCTGACCTTACACAGTTTTTGACCAGCTGGAGGCCCTTCTTCTCTGGATTCC 331
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 194 CTCTTAATGCTGACCTTACACAGTTTTTGACCAGCTGGAGGCCTTTCTTCTCCGGATTCC 253
Query 332 ATCTGATTGTTGTCAAAGATCCTGAGCTCAAGGAGGAACTCAACATACCAGAAGGCTTTG 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 ATCTGATTGTTGTCAAAGATCCTGAGCTCAAGGAGGAACTCAACATACCAGAAGGCTTTG 313
Query 392 ATGTAGATGTCTACTCAAAGACTGACATGGAAAAAGTTGTGGGCGCATCCAATGCCACCA 451
| |||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 314 ACGTAGATGTCTACTCTAAGACTGACATGGAAAAGGTTGTGGGCGCATCCAATTCCACCA 373
Query 452 TGTTCTCTGGCTATTCTTGCAGATATTTCGGTTATCTCATATCTAAAAAGAAGTACATTG 511
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 374 TGTTCTCTGGCTATTCTTGCAGATATTTCGGTTATCTCGTATCTAAAAAGAAGTACATTG 433
Query 512 TCTCAATTGATGATGATTGTGTCCCTGCTAAAGATCCCAAGGGGTTCCTAGTGGATGCTG 571
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 434 TCTCTATTGATGATGATTGTGTCCCTGCTAAAGATCCGAAGGGGTTCCTAGTGGATGCTG 493
Query 572 TTACTCAGCACGTGATCAACCTCGAGAACCCTGCCACGCCTCTCTTCTTCAACACCCTTT 631
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 494 TTACTCAGCACGTGATCAACCTTGAAAACCCAGCCACGCCTCTCTTCTTCAACACCCTTT 553
Query 632 ATGATCCTTATC-GCGAGGGAGCGGATTTTGTCCGTGGATACCCTTTCAGCCTCAGAAGT 690
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 ATGATCCTTA-CTGCGAGGGAGCGGATTTTGTCCGTGGATACCCTTTCAGCCTCAGAAGT 612
Query 691 GGTGTCCCTTGTGCTGCATCTTGTGGACTTTGGCTTAATCTAGCTGATCTTGATGCTCCA 750
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 613 GGTGTCCCTTGTGCTGCATCTTGTGGGCTTTGGCTTAATCTAGCTGATCTTGATGCTCCA 672
Query 751 ACACAAGCTCTCAAGACAGAGCAAAGGAACACTTCATATGTTGATGCGGTTATGACTGTC 810
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 673 ACACAAGCTCTCAAGACAGAGAAAAGGAACACTGCATATGTTGATGCGGTTATGACTGTC 732
Query 811 CCGGCCAAGGCTATGCTACCCATAAGCGGAATCAACATCGCTTTTAACCGCGAGTTGGTA 870
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 733 CCGGCCAAGGCTATGCTACCCATAAGCGGAATCAACATTGCTTTTAACCGCGAGTTGGTG 792
Query 871 GGTCCAGCTTTGGTGCCTGCACTTAGATTGGCTGGAGAAGGGAAAGTGAGATGGGAAACA 930
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 793 GGTCCAGCTTTGGTGCCTGCACTCAGATTGGCTGGAGAAGGGAAAGTGAGATGGGAAACA 852
Query 931 CTTGAAGATGTTTGGTGTGGGATGTGTCTGAAACATATCTCTGATCATTTGGGTTATGGT 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 CTTGAAGATGTTTGGTGTGGGATGTGTCTGAAACATATCTCTGATCATTTGGGTTATGGT 912
Query 991 GTGAAAACCGGTCTGCCTTATGTGTGGAGAAACGAGAGAGGAGATGCAGTGGAGAGTTTG 1050
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 GTGAAAACCGGACTGCCTTATGTGTGGAGAAACGAGAGAGGAGATGCAGTGGAGAGTTTG 972
Query 1051 AGGAAGAAATGGGAAGGAATGAAGCTGATGGAGAAAAGTGTTCCATTTTTCGAGTCATTG 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 973 AGGAAGAAATGGGAAGGAATGAAGCTGATGGAGAAAAGTGTTCCATTTTTCGATTCATTG 1032
Query 1111 AAATTGCCCGAGACTGCACTTAAAATTGAAGATTGTGTGATCGAGCTTGCTAAAGCGGTG 1170
||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1033 AAATTGCCCGAGACTGCGCTTAAAGTTGAAGATTGTGTGATTGAGCTTGCTAAAGCGGTG 1092
Query 1171 AAAGAGCAGTTGGGTTCAGATGATCCTGCCTTCACGCAAGCTGCTGATGCTATGGTTAAG 1230
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1093 AAAGAGCAGTTAGGTTCAGATGATCCTGCCTTTACGCAAGCTGCTGATGCTATGGTTAAG 1152
Query 1231 TGGATCCAGCTCTGGAATTCTGTTAATTCTAGCTCTTGAAGTTGAACAATCTCTCGAGGT 1290
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1153 TGGGTCCAGCTCTGGAATTCTGTTAATTCTAGCGCTTGAAGTTGAACAATCTCTTGAGGT 1212
Query 1291 TAGGTTCCTTTATCACTTCTAAGCATATTATCGTGTCTCAGAGATTTACCAAAGTCGTTT 1350
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1213 TAGGTTCCTTTATCACTTCTAAGCATATTATCATGTCTCAGAGATTTACCCAAGTCGTTT 1272
Query 1351 ACTTTCTTTTAGTATCCTCATGTTTATTTTCTCTTTATTTTTTCTAA-TTATAAGCATGT 1409
||||||||||||||| ||||||||||||||||||| || | |||| ||||||||||||
Sbjct 1273 TCTTTCTTTTAGTATCATCATGTTTATTTTCTCTTT-TTAT--CTAAATTATAAGCATGT 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72288784800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5