BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488508
Length=1960
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16520.1 | Symbols: | unknown protein; Has 25 Blast hits to... 3035 0.0
> AT5G16520.1 | Symbols: | unknown protein; Has 25 Blast hits
to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr5:5394608-5397455 REVERSE LENGTH=2043
Length=2043
Score = 3035 bits (1643), Expect = 0.0
Identities = 1861/1967 (95%), Gaps = 11/1967 (1%)
Strand=Plus/Plus
Query 1 TGTGATGGCGTGCCCTAGAAACTCCATAACATACAACGCCACGCGCTGCGCGTGCGGTAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 TGTGATGGCGTGCCCTAGAAACTCCATAACATACAACGCCACGCGCTGCGCGTGCGGTAT 140
Query 61 CGGTCAGCTGCTAAACCGGAGTTCCGGGAGCTGCGAGATCTTCGGTTGGCCGTCGACGAT 120
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 141 CGGTCAGCTACTAAACCGGAGCTCCGGGAGCTGCGAGATCTTCGGTTGGCCGTCAACAAT 200
Query 121 CTCAACGGACAAAGATGTTAACTACAGCGTAATATCATTCGCCGATAATTTATTCGCTTT 180
||| || ||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 201 CTCCACAGACAAAGATGTAAACTACAGCGTAATATCATTCGCCGAGACTTTATTCGCTTT 260
Query 181 CGATAGGATCCGTAAGTTCACGCAATCTCAAGCTGTTTTCTTAGAAGCCACGCTCGTGAT 240
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 261 CGATAGGATCCGTAAGTTCACGCAATCTCAAGCTATTTTCTTAGAAGCTACGCTCGTGAT 320
Query 241 GCTTCTCTCCTGGTTAGTCTTTTGCTTCTTCCTGAGATTCACCAAACTCGGCGATGGTCG 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 321 GCTTCTCTCCTGGTTAGTCTTTTGTTTCTTCCTGAGATTCACCAAACTCGGCGATGGTCG 380
Query 301 TAATGTCTGGTTCAATCTCCGTTGGTGGATTACTCGCCTTGACGTCTTCTTCTCCACTAG 360
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 381 TAATGTCTGGTTTAATCTCCGTTGGTGGATTACTCGACTTGACGTCTTCTTCTCCACTAG 440
Query 361 ACATTGGCTTGATGATCAACAAATTGTCAAGAAACGTAAAACAGAACTTGGTGGAACATT 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 ACATTGGCTCGATGATCAACAAATTGTCAAGAAACGTAAAACAGAACTTGGTGGAACATT 500
Query 421 ATCTGTTGCGAGCTGGATTGTTTTCATTGGATTATTCGCTGCGCTGCTTTATCAAATCAT 480
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 501 TTCTGTTGCGAGCTGGATTGTTTTCATTGGTTTATTCGCTGCGCTGCTTTATCAAATCAT 560
Query 481 AACCAAGAGAACAATTGAAGTTCACAATGTGAGAGCTACTGGTTCTCCGGATTTGATCTC 540
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 561 AACCAAGAGAACAATTGAAGTTCACAATGTGAGAGCTACTGGTTCTCCAGATTTGATCTC 620
Query 541 ATTCGAGAACGATTTGGAGTTTAACATTACTGCTGTTTCTGATATGAGTTGCTCTAATTT 600
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 621 ATTCGAGAACGATTTGGAGTTTAACATCACCGCTGTTTCGGATATGAGTTGCTCTAATTT 680
Query 601 ACGCGGTATTGGGAATGTGGTCACT-GGTAATCCCGGATTCAGCGAGTTCAAAGTTGCTG 659
||||||||||||||| ||||||| | ||||||||||| || |||||||||||||||||||
Sbjct 681 ACGCGGTATTGGGAACGTGGTCA-TGGGTAATCCCGGGTTTAGCGAGTTCAAAGTTGCTG 739
Query 660 CTCTTTCCCGTTTAGGAAGCTATGCTTGTAAGAACACAACTTCAGGGCCAACTGTGAATT 719
||||||| |||||||||||||| |||||||||| ||||||||||| ||||| |||||||
Sbjct 740 CTCTTTCTAGTTTAGGAAGCTATACTTGTAAGAATACAACTTCAGGACCAACAGTGAATT 799
Query 720 TCAAGTGTACCAAATGTCGTCTCACCAGTGATTATATCTATATCTCGTGGCATTTCGTTG 779
|||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 800 TCAAATGTACCAAATGTCGTCTCACCAACGATTACATATATATCTCGTGGCATTTCGTTG 859
Query 780 ATCTTCCTGATTCGCCTGCCGCTGCTGTTGGATTTCAGTTTAACTTTACGTCTAAGAATG 839
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 860 ATCTTCCTGATTCGCCTGCTGCTGCTGTTGGATTTCAGTTTAACTTTACGTCTAAGAATG 919
Query 840 GAGATAACAAGAAGCATATGAGTTTTGTTAGTGGTACTCTGAGAAACGGGAGCATCCTTG 899
|| |||| ||||||||||||||||||||||||| |||||||||||||| ||||| || |
Sbjct 920 GACCTAACGAGAAGCATATGAGTTTTGTTAGTGGCACTCTGAGAAACGGAAGCATTCTCG 979
Query 900 ATGAAAGTCCAGTTACTTTCCGTGGAACCGAAGGGAACGTATTGAAGTTTAATCTGTTTC 959
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 980 ATGAAAGTCCGGTTACTTTCCGTGGAACCGAAGGGAATATATTGAAGTTTAATCTGTTTC 1039
Query 960 CTCGGATTTACCATCATTTGCATGATCTTAAGCTAATCCAACCTCTGTTTCACGAGTTTA 1019
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1040 CTCGGATTTACCATCATTTGCATGATCTAAAGCTAATCCAACCTCTCTTTCACGAGTTTA 1099
Query 1020 TCCCTGGCTCTGTTTACCGAGACACTACTCAACTTCAGGCATCTATGGGAAGGTCAACAG 1079
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1100 TCCCTGGCTCTGTTTACCGAGACACTACTCAGCTTCAGGCATCTATGGGAAGGTCAACAG 1159
Query 1080 ATGGCATACTCAACACCACGTTGTTCATCAACTATCTGTCTGCTTATATTGTTGAGATCG 1139
||||||||||||| || || ||||||||||||||||| |||||||||||||||||||| |
Sbjct 1160 ATGGCATACTCAATACGACATTGTTCATCAACTATCTCTCTGCTTATATTGTTGAGATAG 1219
Query 1140 ACCATGAAAATATACTCGGTCCTGTTAGCTTCCTAGCCGATCTTGGTGGTTTGTATTGCA 1199
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1220 ACCATGAAAATATACTCGGTCCTGTTAGCTTCCTTGCCGATCTTGGTGGTTTGTATTGCA 1279
Query 1200 TCAGTATTGGCTTATTTTTCTACCTACTAGTGCAGTGTGAGTATAGGATCAAGAAGCTGC 1259
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1280 TCAGTATTGGCATATTTTTCTACCTACTAGTGCAGTGTGAGTACAGGATCAAGAAGCTGC 1339
Query 1260 GAAACGAAGATACCGTTTTCAGGAAGATAAGGAATCGTCGTAAAGCTCTAGATCACTGGG 1319
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 GAAATGAAGATACTGTTTTCAGGAAGATAAGGAATCGTCGTAAAGCTCTAGATCACTGGG 1399
Query 1320 ATAAACTGAGAAGATATGTTGCATACACATGGGATTGCAGCATATTGGTCGATGATGCCA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 ATAAACTGAGAAGATATGTTGCATACACATGGGATTGCAGCATATTGGTCGATGATGCCA 1459
Query 1380 TCAAAACGACAAATTTATCAGGAATTTGTGGTTTAACGAGACCCTC-AACATCTTCTAAT 1438
||||||||||||| |||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 1460 TCAAAACGACAAAGGTATCAGGAATGTGTGGTTTAACGAGACC-TCCAACATCTTCTAAT 1518
Query 1439 AGCTCGGAACGTGGGCAATCGATCATGTCGAACAAGAAACCTAACTTAAGTATTGAGAAG 1498
|||||||||| ||| ||||||||||| |||||||||| ||||||||| |||||||||||
Sbjct 1519 AGCTCGGAACACGGGGAATCGATCATGGCGAACAAGAAGCCTAACTTAGGTATTGAGAAG 1578
Query 1499 AATGTAATTCCACAACCTGCAAGTCTAGAAATGAGCTCTTTTGATTCGGCTTCTTCTCTG 1558
||||| ||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1579 AATGTGATTTCACAACCTGCAAGTTTAGAACTGAGCTCTTTTGATTCGGCTTCTTCTCTG 1638
Query 1559 GCGCATGGAGATAATTTCTCAAATAAGAAGAGTATGACTCATC-AAGTTTCTCATAGTGA 1617
|| ||||||||||||||||||||||| |||||||| ||||||| || |||||||||||||
Sbjct 1639 GCTCATGGAGATAATTTCTCAAATAAAAAGAGTATAACTCATCCAA-TTTCTCATAGTGA 1697
Query 1618 AGACGATTCAATCCCTCCACCTCCTCCAATGGAGTTCACTGAAGGGTCTTCTGGTTCAGA 1677
||||| |||||||||||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct 1698 AGACGTTTCAATCCCTCCACCTCCTCCAATGGAGTTCATTGATGGATCTTCTGGTTCAGA 1757
Query 1678 AGTGGACGCAATGGACATCAAGAAGAAATTTCAACTTCTTTACGACTACAATGTATTGCT 1737
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1758 AGTGGACGCAATGGATATCAAGAATAAATTTCAACTTCTTTACGACTACAATGTATTGCT 1817
Query 1738 TAGGGAAAAACTTTTAGACACACAGTCTTTGCTTAATGCTTTGGCACCCAAAGCA-T--C 1794
|||||||||||||||||| || ||||||||||||||| |||||||||||||| || | |
Sbjct 1818 TAGGGAAAAACTTTTAGAGACTCAGTCTTTGCTTAATACTTTGGCACCCAAACCAATAGC 1877
Query 1795 ATCATCATCTTCAACCGCGGAACACGGTGCCTAGAACAT-GAGGTTGTCTGACATGTATT 1853
||||||||||||||||| ||||| | |||||||||||| |||||||| |||||||||||
Sbjct 1878 ATCATCATCTTCAACCGTGGAACGCAGTGCCTAGAACAACGAGGTTGTTTGACATGTATT 1937
Query 1854 GTTTGTATACTCCCTGTAACTTCCACATTTATTGAACAAAAGGAATGACTAATGTTTGTT 1913
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1938 GTTTGTATACTCCCTGTAACTTCCACATTTATTGAACAAA-GGAATGACTAATGCTTGTT 1996
Query 1914 GTATCTTTGTGAATATACCAAGTTGCTAGTAGTAACACATTTTTGCT 1960
||||||||||||||||||| |||||||| |||||||| ||||| |||
Sbjct 1997 GTATCTTTGTGAATATACCTAGTTGCTAATAGTAACAAATTTTCGCT 2043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97087854030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5