BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488510
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16540.1 | Symbols: ZFN3 | zinc finger nuclease 3 | chr5:540... 2104 0.0
AT3G02830.1 | Symbols: ZFN1 | zinc finger protein 1 | chr3:6138... 318 8e-86
> AT5G16540.1 | Symbols: ZFN3 | zinc finger nuclease 3 | chr5:5403188-5405154
FORWARD LENGTH=1497
Length=1497
Score = 2104 bits (1139), Expect = 0.0
Identities = 1374/1483 (93%), Gaps = 34/1483 (2%)
Strand=Plus/Plus
Query 23 TCT-TCTGCTTTCTCTCTCTAGACGTG-----T--TTCTCT-ATGTCTTCCTCCATTGTC 73
||| ||||||||||||||||||||||| | |||||| |||||||||| ||||| |
Sbjct 34 TCTCTCTGCTTTCTCTCTCTAGACGTGATCTCTAATTCTCTAATGTCTTCCTGCATTGCC 93
Query 74 ATTACCTCTAAACTCTCCACAATCGGAGGAAGACGATTCGTGGGAGGAAGAGAAACGATG 133
||| ||||||| | ||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 94 ATTTCCTCTAACCCCTCCACAATCGGAGGAAGACGATTCCTGGGAGCAAGAGAAACGATG 153
Query 134 GGATTTCCCGTCGGAAAATCTC-TAGAGTGAGAAGAATTATGGCGTG-TCTTAATGCTTA 191
||| ||||| |||||||||||| ||||||||| |||||||||| ||| ||||||||||||
Sbjct 154 GGACTTCCCATCGGAAAATCTCTTAGAGTGAG-AGAATTATGGTGTGTTCTTAATGCTTA 212
Query 192 ATACTCACGGACGCAGCCATTGTTCGTCATCATCTCCATGGATTTTGATTCCAGAGTTCC 251
||| |||| ||| |||||||||||| |||||||||||||||| || || || || |
Sbjct 213 ATAATCACCGACACAGCCATTGTTCTTCATCATCTCCATGGA--TT--TT---GA-TT-C 263
Query 252 CATTTCACGGGAAAGCACTTCTCTTTCCACGTTGCTTAACCAAGATGCAATGTGGCAAAT 311
|||||| ||||||||||||| ||||||| | |||||||||||| ||||||||||||||||
Sbjct 264 CATTTCTCGGGAAAGCACTTTTCTTTCCCCATTGCTTAACCAAAATGCAATGTGGCAAAT 323
Query 312 GAACTTGGGATCAGATGATACAATGGGTCTTGATGGGTCTTATCCGGAACGTCACGGAGA 371
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 324 GAACTTGGGATCAGATGATACAATGGGTGTTGATGGGTCTTATCCGGAACGTCACGGAGA 383
Query 372 GCCAGATTGTGCTTATTACATAAGGACTGGACTTTGTAGGTTTGGTTCTACTTGCCGATT 431
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 384 GCCAGATTGTGCTTATTATATAAGGACTGGACTTTGTAGGTTTGGTTCAACTTGCCGATT 443
Query 432 CAATCATCCCCACGACCGGAAACTGGTTATAGCAACAGCAAGGATTAAAGGAGAATACCC 491
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 444 CAATCATCCTCACGACCGGAAACTGGTTATAGCAACTGCAAGGATTAAAGGAGAATACCC 503
Query 492 TGAAAGAATTGGGCAGCCTGAATGTGAGTTTTATCTTAAAACAGGAACCTGCAAATTCGG 551
|||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 504 TGAAAGAATTGGTCAGCCTGAATGTGAGTTTTATCTGAAGACAGGGACCTGCAAATTCGG 563
Query 552 AGTGACTTGCAAGTTTCATCATCCTAGGAACAAAGCTGGGATTGATGGAAGTGTATCAGT 611
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 564 AGTGACTTGCAAGTTTCATCATCCTAGGAACAAAGCTGGTATTGATGGAAGTGTATCAGT 623
Query 612 TAATGTCTTAGGCTATCCTCTACGTCCAAACGAAGATGATTGTTCTTACTTTTTGAGAAC 671
|||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 624 TAATGTCTTAAGCTATCCTCTACGTCCGAACGAAGATGATTGCTCTTACTTTTTGAGAAT 683
Query 672 TGGGCACTGTAAATTTGGGGGAACTTGTAAATTCAATCACCCTCAGACTCAATCAACCAA 731
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 TGGACAATGTAAATTTGGGGGAACTTGTAAATTCAATCACCCTCAGACTCAATCAACCAA 743
Query 732 CTTGATGGTTTCTCTTCGTGGCTCTCCGGTTTACTCTGCTCTTCAACCTCCAACTGATGG 791
||||||||||||| |||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 744 CTTGATGGTTTCTGTTCGTGGCTCTCCGGTTTACTCTGCTCTTCAATCTCTAAC---TGG 800
Query 792 TCAACAGTCTTATTCTTGGCCGAGAACATCTTTTGTTGCAAACCCTCCTCGTTGGCAAGA 851
||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 801 TCAACCGTCTTATTCTTGGTCGAGAACATCTTTTGTTGCAAACCCTCCTCGTTTGCAAGA 860
Query 852 TCCTTCTAGTTTCTCTTCAGGATCTCAAGGAGGTCTCTTCTCATCCGGGTTTCATTCAGG 911
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 861 TCCTTCTGGTTTCGCTTCAGGATCTCAAGGAGGTCTCTTCTCATCCGGGTTTCATTCGGG 920
Query 912 AAACTCTGTTCCGCTCGGGTTCTATGCATTACCTAGAGAGAATGTATTCCCAGAAAGACC 971
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 921 AAATTCTGTTCCGCTCGGGTTCTATGCATTACCTAGAGAGAATGTATTCCCGGAAAGACC 980
Query 972 AGGCCAACCTGAATGTCAATTCTACATGAAGACAGGAGATTGCAAATTTGGAACAGTCTG 1031
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 AGGCCAACCTGAATGCCAATTCTACATGAAGACAGGAGATTGCAAATTTGGAACAGTCTG 1040
Query 1032 CAAATTTCATCATCCAAGAGACAGACAAACCCCTGCTCCTGATTGTGTCTTAAGCTCTGT 1091
||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct 1041 CAAATTTCATCATCCTAGAGACAGGCAAACCCCTCCTCCTGATTGTGTCTTAAGCTCGGT 1100
Query 1092 TGGCCTCCCTTTACGCCAGGGAGAACCACTGTGCGTGTTCTATTCGCGGTATGGGATCTG 1151
|||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1101 TGGCCTTCCTTTACGCCCGGGAGAACCACTGTGCGTGTTCTATTCTCGGTATGGGATCTG 1160
Query 1152 CAAGTTTGGTCCAAGCTGTAAATTTGATCACCCGATGCGAGTCTTCACTTACAACAACAA 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 CAAGTTTGGTCCAAGCTGTAAATTTGATCACCCGATGCGAGTCTTCACTTACAACAACAA 1220
Query 1212 TGA-TGCATCTCCTTCTCCTTCATCATCT-TCGCATCAAGAGACTGCCATCACCACACAG 1269
| | ||||||||||||||||||||||||| | ||||||||||||||| ||||||||| ||
Sbjct 1221 T-ACTGCATCTCCTTCTCCTTCATCATCTCT-GCATCAAGAGACTGCAATCACCACAGAG 1278
Query 1270 CTCAGGAATCTCATAGTCTCTTCTTCAGTGGAAGCAACACCCACAACACTCCCTGAAACA 1329
|||||||||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||
Sbjct 1279 CTCAGGAATCTCCTAGTCTCTTCTTCTGTGGAAGCAAAACCCACATCACTCCCTGAAACA 1338
Query 1330 ACCTCTGCTAAAGAAACCATTGTTCATGCACAACACTGAAA-CCACTTTGTTTTGTCTGT 1388
|||||||||||||| ||||||||| ||||||| |||||||| || || |||||||||| |
Sbjct 1339 ACCTCTGCTAAAGACACCATTGTTGATGCACAGCACTGAAAACC-CTGTGTTTTGTCTAT 1397
Query 1389 CTTGAA-CAACATTTAACATTTGTTTTGTTTTATCTCGTAAACATTTATGTACAGAGATG 1447
|||||| ||| || |||||||||||||| ||||||| |||| ||||||||||||||||||
Sbjct 1398 CTTGAAACAATATGTAACATTTGTTTTGCTTTATCTTGTAAGCATTTATGTACAGAGATG 1457
Query 1448 AGAAATTAACTTCTGATCTGATTCGCCTTTTGTTGTAATTTTC 1490
| | | | | || ||||||||||||||||||||||||||||
Sbjct 1458 ATATCTGA--T-CTAATCTGATTCGCCTTTTGTTGTAATTTTC 1497
> AT3G02830.1 | Symbols: ZFN1 | zinc finger protein 1 | chr3:613802-616144
FORWARD LENGTH=1695
Length=1695
Score = 318 bits (172), Expect = 8e-86
Identities = 271/319 (85%), Gaps = 6/319 (2%)
Strand=Plus/Plus
Query 897 CGGGTTTC-ATTCAGGAAACTCTGTTCCGCT---CGGGT-TCTATGCATTACCTAGAGAG 951
|||||| | || | ||| |||||||||||| |||| | |||||||| || || ||
Sbjct 1019 CGGGTTACAATCCGGGATCCTCTGTTCCGCTAGGAGGGTAT-TATGCATTGCCGAGGGAA 1077
Query 952 AATGTATTCCCAGAAAGACCAGGCCAACCTGAATGTCAATTCTACATGAAGACAGGAGAT 1011
||||| ||||| || |||||||| ||||| ||||| |||||||||||||||||||| ||
Sbjct 1078 AATGTGTTCCCGGAGAGACCAGGACAACCCGAATGCCAATTCTACATGAAGACAGGTGAC 1137
Query 1012 TGCAAATTTGGAACAGTCTGCAAATTTCATCATCCAAGAGACAGACAAACCCCTGCTCCT 1071
||||||||||| ||||| ||||||||||| ||||| |||||||||||| | ||| |||||
Sbjct 1138 TGCAAATTTGGCACAGTTTGCAAATTTCACCATCCTAGAGACAGACAAGCTCCTCCTCCT 1197
Query 1072 GATTGTGTCTTAAGCTCTGTTGGCCTCCCTTTACGCCAGGGAGAACCACTGTGCGTGTTC 1131
|||||| |||||||||| |||||||||| ||||||| ||||||||| |||| ||||||
Sbjct 1198 GATTGTCTCTTAAGCTCCATTGGCCTCCCCTTACGCCCGGGAGAACCGTTGTGTGTGTTC 1257
Query 1132 TATTCGCGGTATGGGATCTGCAAGTTTGGTCCAAGCTGTAAATTTGATCACCCGATGCGA 1191
||| | || ||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1258 TATACACGCTATGGAATCTGCAAATTTGGTCCAAGCTGTAAATTTGATCACCCAATGCGA 1317
Query 1192 GTCTTCACTTACAACAACA 1210
|| ||||| ||| ||||||
Sbjct 1318 GTATTCACATACGACAACA 1336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73493597880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5