BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488513
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16550.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1526 0.0
> AT5G16550.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5405350-5406887
FORWARD LENGTH=1172
Length=1172
Score = 1526 bits (826), Expect = 0.0
Identities = 1002/1082 (93%), Gaps = 31/1082 (3%)
Strand=Plus/Plus
Query 71 TCTCAAGTTTTATTCCTTACTCTTATTACTTCCTAAATCCGATCGAAACAACTGGTGGGT 130
|||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 98 TCTCAACTTTTGTTCCTTACTCTTATTACTTCCTAAATCCGATCGAAACAACTGTTGGGT 157
Query 131 TAGTTTCTAATTTCCAAGAATGACGCAAGATCACGACGAGACGGAGAATAAAACCTACGC 190
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 158 TAGTTTCTAATTTCCAAGAATGGCGCAAGATCACGACGAGACGGAGAATAAAACCTTTGC 217
Query 191 CGACGTTGTCGGTGGCGATGATGTCGGCGAAATTGTCAACGGAGGAACGAAGAATGGTTA 250
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 218 CGACGTTGTCGGTGGCGATGATGTCGGCGAAATTGTCAACGGAGGAACAAAGAATGGCTA 277
Query 251 TCGTAAACCGGACTCTGT-G-G-A-GAAG--GATGAGGATTTGAAGAGTCTCTATTCCTT 304
|||||||||||||||||| | | | |||| |||||||||||||||||||||||||||||
Sbjct 278 TCGTAAACCGGACTCTGTGGAGAAGGAAGATGATGAGGATTTGAAGAGTCTCTATTCCTT 337
Query 305 GATTTGTCTCACGATCGGTTCGATTCTGTTCCCAGATTCGAAAACCGGTGATGCGTCGTC 364
|||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 338 GATTTGTCTCACGATCGGTTCGATTCTGTTTCCAGATTCGAAAACCGGTGAT--G-CGTC 394
Query 365 TTCGTTTCTTGAACGTGTTAGAAACTCCGTCGCCGAAAATGGGCCCAAGCTTCGAGAAGC 424
|||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 395 TTCGTTTCTTGAACGTGTAAGAAACTCCGTCGCTGAAAATGGGCCTAAGCTTCGAGAAGC 454
Query 425 TTCTGAAAGAACAGGACGCGAGATTCTTCTCTGGACTCGTAGAGGCAGCTAC-CTTCGTG 483
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 455 TTCTGAAAGAACAGGACGCGAGATTCTTCTCTGGACTCGTAGAGGCAGCT-CGCTTCGTG 513
Query 484 CTCTGCTTGTAATCACTATGGGAACAATAGTTCTTCTT-ACAACAATGGCTTTGGTTGTA 542
|||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 514 CTCTGCTTGTCATCACTATGGGAACAATAGTTCTT-TTGACAACAATGGCTTTGGTTGTA 572
Query 543 TTCACACTCTTCTTTGTAGCTGCAACAGCTAATGCTATCATCATTTCTCTTATGATTTCA 602
||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||||||
Sbjct 573 TTCACACTCTTCTTTGTAGCTGCAACAGCCAATGCTATCATAATCTCTCTTCTGATTTCA 632
Query 603 CTTGCTGTTGCTGGTGGCTTCTTGGCGCTCTTCTTTCTTTGCTTGACTGGTGTTTACATT 662
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 633 CTTGCTGTTGCTGGTGGCTTCTTGGCACTCTTCTTTCTCTGCTTGACTGGTGTTTACATT 692
Query 663 GGAGCCTTATCTGTTGCTGCATTTGTCATCTCTACCGCTACAATTTCTGCCGTTGTTTCT 722
||||||||||| ||||||||||| |||||||||||||||||| ||||||| || ||||||
Sbjct 693 GGAGCCTTATCCGTTGCTGCATTCGTCATCTCTACCGCTACAGTTTCTGCTGTCGTTTCT 752
Query 723 GTCTTAATAGCTTCAGGTTGGATTGGGTTCTTCTATGTTGTGTGGTTGGGAACAAGAGGA 782
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 753 GTCTTAATAGCTTCAGGTTGGATTGGGTTTTTCTATGCGGTGTGGTTGGGAACAAGAGGA 812
Query 783 AGCCTACGCTTGGCGAAACAATCGGTTTCAGTGGTGGGATCAGCCATTTCAGGTAACACT 842
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 AGCCTACGCTTGGCTAAGCAATCGGTTTCAGTGGTGGGATCAGCCATTTCAGGTAACACT 872
Query 843 TTCAGTCGTCATCAACCCCAAGACCGGGAGGTAAACATCGAATCATCCAACTGAGAATCC 902
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 873 ATCAGTCGTCATCAACACCAAGACCGGGAGGTAAACATCGAATCAACCAACTGAGAATCC 932
Query 903 ATCTCT-ACCGAGTTTGTAGATAAAACCCGAGTTTTGGTTGTTAATGGAAGCTTGatata 961
|| || |||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 933 GTC-CTTACCGCGTTTGTAAATAAACCCCGACTTTTGGTTGTTAATGGAAGCTTGATATA 991
Query 962 tatatatatGATCTAAGGATTTTGTTGTGAAGAAGCAGAGAACGA-T-A-A-GAATCTTT 1017
| |||| |||||| ||| |||||||||||||||||||||| || | | | |||| |||
Sbjct 992 -A-ATAT--GATCTATGGAGTTTGTTGTGAAGAAGCAGAGAAAGAATGATAAGAATATTT 1047
Query 1018 CAAAATGCATCTTGAAACATTTGGTGATCAAAGTCTGCGGGTTTTTGGATTTGTGTATGC 1077
||||||||| |||||||||||| |||||||| |||| ||| ||||||||| | |||||||
Sbjct 1048 CAAAATGCAACTTGAAACATTTTGTGATCAATGTCTACGGATTTTTGGATCTATGTATGC 1107
Query 1078 ATACATT-TGTGTTTTATGTACTTAAGAA----T---GATCAGTATACATATGAAATCTC 1129
||||||| ||||||||||||||||||||| | ||||||||| |||||||||||||
Sbjct 1108 ATACATTGTGTGTTTTATGTACTTAAGAAAGAATAATGATCAGTATCCATATGAAATCTC 1167
Query 1130 AA 1131
||
Sbjct 1168 AA 1169
Score = 108 bits (58), Expect = 1e-22
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 1 AAAGCCACGTCGGTGCTACACATGTCCCCGATTTCTCCTTCAACA-AAAGCTAAACAGCT 59
|||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||
Sbjct 1 AAAGCCACGTCGGTGCTACACATGTCCCTGATTTCTCCTTTAACATAAAACTAAACAGCT 60
Query 60 GTTTTGTCCGC 70
|||||||||||
Sbjct 61 GTTTTGTCCGC 71
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55471602225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5