BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488515
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16570.1 | Symbols: GLN1;4 | glutamine synthetase 1;4 | chr5... 2001 0.0
AT5G37600.1 | Symbols: ATGSR1, GLN1;1, GSR 1, ATGLN1;1 | glutam... 754 0.0
AT1G48470.1 | Symbols: GLN1;5 | glutamine synthetase 1;5 | chr1... 553 2e-156
> AT5G16570.1 | Symbols: GLN1;4 | glutamine synthetase 1;4 | chr5:5421743-5424566
REVERSE LENGTH=1269
Length=1269
Score = 2001 bits (1083), Expect = 0.0
Identities = 1185/1234 (96%), Gaps = 8/1234 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaCGTCTATTATTCTTTCAGATTCCTACA-AAATGTCTTCACTTGCAGATTTAA 59
|||||||| || ||||||||||| ||||||||| | | ||||||||||||||||||||||
Sbjct 7 AAAAAAAAGGTTTATTATTCTTTGAGATTCCTA-AGATATGTCTTCACTTGCAGATTTAA 65
Query 60 TTAATCTAGATCTCTCCGATTCCACTGACCAGATCATCGCCGAGTACATATGGATTGGTG 119
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 TCAATCTCGATCTCTCCGATTCCACTGACCAGATCATCGCCGAGTACATATGGATTGGTG 125
Query 120 GATCGGGCTTGGATATGAGAAGCAAAGCAAGGACTTTGCCAGGACCAGTGACGGATCCAT 179
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 126 GATCGGGCTTGGATATGAGAAGCAAAGCAAGGACTTTGCCTGGACCAGTGACGGATCCAT 185
Query 180 CGGAGTTACCGAAATGGAACTACGACGGTTCAAGCACCGGCCAAGCTCCCGGTGATGACA 239
|| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 186 CGCAGTTACCGAAATGGAACTACGACGGTTCAAGCACCGGCCAAGCTCCGGGCGATGACA 245
Query 240 GTGAAGTCATCATCTACCCTCAAGCTATCTTCAAAGACCCCTTCAGAAGAGGCAACAACA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GTGAAGTCATCATCTACCCTCAAGCTATCTTCAAAGACCCCTTCAGAAGAGGCAACAACA 305
Query 300 TCCTTGTGATGTGTGACGCATATACACCTGCCGGAGAGCCGATTCCGACGAACAAAAGGC 359
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 306 TCCTTGTGATGTGTGACGCATATACACCGGCAGGAGAGCCGATTCCGACGAACAAAAGGC 365
Query 360 ATGCGGCCGCTAAGATCTTTAG-CGACCCTAGTGTTGTTGCCGAAGAAACATGGTACGGA 418
||||||| |||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 366 ATGCGGCGGCTAAGATCTTT-GAAGACCCTAGTGTTGTCGCCGAAGAAACATGGTACGGA 424
Query 419 ATTGAGCAAGAGTACACTTTGCTGCAAAAGGATATTAAGTGGCCGGTAGGTTGGCCGGTC 478
||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 425 ATTGAACAAGAGTATACCTTGTTGCAAAAGGATATTAAGTGGCCGGTAGGTTGGCCGGTC 484
Query 479 GGCGGTTTCCCAGGTCCTCAGGGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 GGCGGTTTCCCAGGTCCTCAGGGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTT 544
Query 539 GGAAGAGACATCGTAGATTCTCATTACAAAGCTTGTCTTTACGCCGGAATCGATGTCAGT 598
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 545 GGAAGAGACATCGTTGATTCTCATTACAAAGCTTGTCTTTACGCCGGAATCAATGTCAGT 604
Query 599 GGAACTAACGGCGAAGTGATGCCCGGCCAGTGGGAGTTCCAAGTTGGTCCCACCGTTGGA 658
|| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 605 GGGACTAACGGCGAAGTTATGCCTGGCCAGTGGGAGTTCCAAGTCGGTCCCACCGTTGGA 664
Query 659 ATCGCTGCCGCAGATCAGGTCTGGGTCGCTCGTTACATCCTTCAGAGGATCACAGAATTG 718
||||||||||| |||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 665 ATCGCTGCCGCCGATCAGGTCTGGGTTGCTCGTTACATTCTTGAGAGGATCACAGAATTG 724
Query 719 GCTGGAGTTGTTCTGTCTCTTGACCCTAAACCAATTCCGGGAGATTGGAATGGTGCAGGG 778
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 725 GCTGGAGTTGTTCTGTCTCTAGACCCTAAACCAATTCCGGGAGATTGGAATGGTGCAGGG 784
Query 779 GCACACACAAATTACAGTACGAAGTCGATGAGAGAAGATGGAGGGTACGAGGTCATAAAG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 785 GCACACACAAATTACAGTACGAAGTCGATGAGAGAAGATGGAGGGTACGAGGTGATAAAG 844
Query 839 AAAGCGATAGAGAAGCTTGGATTGCGTCACAAGGAACACATTGCTGCTTATGGTGAAGGC 898
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 AAAGCAATAGAGAAGCTTGGATTGCGTCACAAGGAACACATTGCTGCTTATGGTGAAGGC 904
Query 899 AATGAGCGTCGTCTCACAGGAAAACATGAGACCGCCGATATCAACACTTTCTTATGGGGT 958
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 905 AACGAGCGTCGTCTCACCGGAAAACATGAAACCGCCGATATCAACACTTTCTTATGGGGT 964
Query 959 GTGGCAAACCGAGGGGCATCGATTAGGGTTGGGCGTGACACTGAGAAGGCTGGAAAAGGA 1018
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 965 GTGGCAAACCGTGGGGCATCGATTAGGGTTGGGCGTGACACTGAGCAGGCTGGAAAAGGA 1024
Query 1019 TACTTTGAAGATCGTAGGCCAGCTTCGAACATGGATCCTTACACTGTAACCTCCATGATT 1078
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1025 TACTTTGAAGATCGTAGGCCAGCTTCGAACATGGATCCTTACACTGTGACCTCCATGATT 1084
Query 1079 GCTGAATCCACAATCCTTTGGAAACCATGAAAGAAGAAACCTTGAGCTTCAAGGAATCTC 1138
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1085 GCTGAATCCACAATCCTTTGGAAACCATGAAAGAAGAAACCTTGAGCCTCAAGGAATCTC 1144
Query 1139 TA-A-TATCAGTTCATGTTCATTCATCTATGGTCTCTTTCTCATTCTGAAACAGTTCTCA 1196
|| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1145 TATAATATCAGTTCATGTTCATTCTTCTATGGTCTCTTTCTCATTCTGAAACAGTTCTCA 1204
Query 1197 TGTGTTCTTTGTTT-TAAATGTTTGATTTGAAGT 1229
|||||||||||||| | | |||||||||||||||
Sbjct 1205 TGTGTTCTTTGTTTATTA-TGTTTGATTTGAAGT 1237
> AT5G37600.1 | Symbols: ATGSR1, GLN1;1, GSR 1, ATGLN1;1 | glutamine
synthase clone R1 | chr5:14933336-14935841 REVERSE LENGTH=1494
Length=1494
Score = 754 bits (408), Expect = 0.0
Identities = 843/1053 (80%), Gaps = 30/1053 (3%)
Strand=Plus/Plus
Query 71 CTCTCCGATTCCACTGACCAGATCATCGCCGAGTACATATGGATTGGTGGATCGGGCTTG 130
||||| || ||||||||| | ||||| || || ||||||||| ||||||| || || ||
Sbjct 219 CTCTCAGACTCCACTGACAAAATCATTGCTGAATACATATGGGTTGGTGGTTCTGGAATG 278
Query 131 GATATGAGAAGCAAAGCAAGGACTTTGCCAGGACCAGTGACGGATCCATCGGAGTTACCG 190
|| |||||||||||||| |||||| | || ||||||||||| || || ||| || ||||
Sbjct 279 GACATGAGAAGCAAAGCCAGGACTCTACCTGGACCAGTGACTGACCCTTCGCAGCTACC- 337
Query 191 AAA-TGGAACTACGACGGTTCAAGCACCGGCCAAGCTCCCGGTGATGACAGTGAAGTCAT 249
||| |||||||| || ||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 338 AAAGTGGAACTATGATGGTTCAAGCACAGGCCAAGCTCCTGGTGAAGACAGTGAAGTCAT 397
Query 250 CATCTACCCTCAAGCTATCTTCAAAGACCCCTTCAGAAGAGGCAACAACATCCTTGTGAT 309
| | ||||||||||| || ||||| || || ||| | ||||| |||||||| ||||| ||
Sbjct 398 CTTATACCCTCAAGCCATATTCAAGGATCCTTTCCGTAGAGGAAACAACATTCTTGTCAT 457
Query 310 GTGTGACGCATATACACCTGCCGGAGAGCCGATTCCGACGAACAAAAGGCATGCGGCCGC 369
||| || || || || || || || || || || ||||| |||||||| || || || ||
Sbjct 458 GTGCGATGCGTACACTCCCGCGGGTGAACCAATCCCGACTAACAAAAGACACGCTGCGGC 517
Query 370 TAAGATCTTTAGCGACCCTAG-TGTTGTTGCCGAAGAAACATGGTACGGAATTGAGCAAG 428
|||| |||||||| ||||| | ||||| || |||| ||||||| || ||||||||||
Sbjct 518 TAAGGTCTTTAGCAACCCT-GATGTTGCAGCTGAAGTGCCATGGTATGGTATTGAGCAAG 576
Query 429 AGTACACTTTGCTGCA-AAAGGATATTAAGTGGCCGGTAGGTTGGCCGGTCGGCGGTT-T 486
| |||||||| || || ||| ||| | |||||||| || |||||||| | || |||| |
Sbjct 577 AATACACTTTACTCCAGAAA-GATGTGAAGTGGCCTGTTGGTTGGCCTATTGGTGGTTAT 635
Query 487 CCCAGGTCCTCAGGGACCGTACTACTGTGG-AGTTGGAGCAGACAAAGCCTTTGGAAGAG 545
||| || ||||||||||||||||| || || | |||||||||||||| | ||||| ||||
Sbjct 636 CCC-GGCCCTCAGGGACCGTACTATTGCGGTA-TTGGAGCAGACAAATCTTTTGGCAGAG 693
Query 546 ACATCGTAGATTCTCATTACAAAGCTTGTCTT-TACGCCGGAATCGATGTCAGTGG-AAC 603
| | || |||||||| ||||| || || ||| ||||| || ||| | | ||||| | |
Sbjct 694 ATGTTGTTGATTCTCACTACAAGGCCTG-CTTATACGCTGGGATCAACATTAGTGGCATC 752
Query 604 TAACGGCGAAGTGATGCCCGGCCAGTGGGAGTTCCAAGTTGGTCCCA-CCGTTGGAATCG 662
|| || ||||| ||||| || |||||||||||||| || ||| ||| | ||||| |||
Sbjct 753 -AATGGAGAAGTCATGCCGGGTCAGTGGGAGTTCCAGGTCGGT-CCAGCTGTTGGTATCT 810
Query 663 CTGCCGCAGATCAGGTCTGGGTCGCTCGTTACATCCTT-CAGAGGATCACAGA-ATTGGC 720
| || || ||| | | ||||||||||||||||| || ||||||||||||| ||| ||
Sbjct 811 CGGCTGCTGATGAAATTTGGGTCGCTCGTTACAT-TTTGGAGAGGATCACAGAGATT-GC 868
Query 721 TGGAGTTGTTCTGTCTCTTGACCCTAAACCAATTCCGGGAGATTGGAATGGTGCAGGGGC 780
||| || || | ||| ||||||| ||||| ||||| || || ||||| ||||| || ||
Sbjct 869 TGGTGTAGTGGTATCTTTTGACCCGAAACCGATTCCCGGTGACTGGAACGGTGCTGGTGC 928
Query 781 ACAC-ACAAATTACAGTACGAAGTCGATGAGAGAAGATGGAGGGTACGAGGTCATAAAGA 839
||| | || |||||||| ||||| ||||| ||||| || || |||||| |||| ||||
Sbjct 929 TCACTGC-AACTACAGTACCAAGTCAATGAGGGAAGAAGGCGGTTACGAGATCATCAAGA 987
Query 840 AAGCGATAGAGAAGCTT-GGATTGCGTCACAAGGAACACATTGCTGCTTATGGTGAAGGC 898
|||| || || || || ||| || | ||||| ||||||||||||||||| |||||||||
Sbjct 988 AAGCAATCGATAA-ATTGGGACTGAGACACAAAGAACACATTGCTGCTTACGGTGAAGGC 1046
Query 899 AATGAGCGTCGTCTCACAGGAAAACATGAGACCGCCGATATCAACACTTTC-TTATGGGG 957
||||||||||||||||||||| | || ||||| || || |||||||||||| || |||||
Sbjct 1047 AATGAGCGTCGTCTCACAGGACACCACGAGACTGCTGACATCAACACTTTCCTT-TGGGG 1105
Query 958 TGTGGCAAACCGAGGGGCATCGATTAGGGTTGGGCGTGACACTGAGAAGGCTGGAAAAGG 1017
||| || ||||| || |||||||| | || || ||||| || ||||| | || |||||
Sbjct 1106 TGTTGCGAACCGTGGAGCATCGATCCGAGTAGGACGTGATACGGAGAAAGAAGGGAAAGG 1165
Query 1018 ATACTTTGAAGATC-GTAGGCCAGCTTCGAACATGGATCCTTACACTGTAACCTCCATGA 1076
||||||||| || | | |||||||||||||||||||||||||||| ||| || |||||||
Sbjct 1166 ATACTTTGAGGA-CAGGAGGCCAGCTTCGAACATGGATCCTTACATTGTCACTTCCATGA 1224
Query 1077 TTGCTGA-ATCCACAATCCTTTGGAAACCATGA 1108
|||| || | | |||||||| ||||| || |||
Sbjct 1225 TTGCAGAGA-CTACAATCCTCTGGAATCCTTGA 1256
> AT1G48470.1 | Symbols: GLN1;5 | glutamine synthetase 1;5 | chr1:17913711-17916098
FORWARD LENGTH=1307
Length=1307
Score = 553 bits (299), Expect = 2e-156
Identities = 790/1025 (77%), Gaps = 42/1025 (4%)
Strand=Plus/Plus
Query 92 ATCATCGCCGAGTACATATGGATTGGTGGATCGGGCTTGGATATGAGAAGCAAAGCAAGG 151
|||||||| || ||||||||||| ||||| || || ||||||| ||||||||||| |||
Sbjct 128 ATCATCGCTGAATACATATGGATCGGTGGCTCTGGAATGGATATTAGAAGCAAAGCCAGG 187
Query 152 ACTTTGCCAGGACCAGTGACG-GATCCATCGGAG-TTACCGAAATGGAACTACGACGGTT 209
|| || ||||||||||| | | ||||| | || || || |||||||||||||| || |
Sbjct 188 ACATTACCAGGACCAGT-AAGTAATCCAACAAAGCTT-CCAAAATGGAACTACGATGGAT 245
Query 210 CAAGCACCGGCCAAGCTCCCGGTGATGACAGTGAAGTCA-TCATCTACCCTCAAGCTATC 268
| ||||||| |||||| |||| ||||| |||||||||| || | || ||||| || ||
Sbjct 246 CTAGCACCGATCAAGCTGCCGGAGATGATAGTGAAGTCATTC-TTTATCCTCAGGCAATA 304
Query 269 TTCAAAGACCCCTTCA-GAAGAGGCAACAACATCCTTGTGATGTGTGACGCATATACACC 327
|| || ||||| |||| |||| || |||||||| || ||||||||||| || || | |||
Sbjct 305 TTTAAGGACCCATTCAGGAAG-GGGAACAACATTCTGGTGATGTGTGATGCTTACAGACC 363
Query 328 TGCCGGAGAGCCGATTCCGACGAACAAAAGGCATGCGGCCGCT-AAGATCTT-TAGCGA- 384
|||||||| || |||||||| ||||| ||||| ||||| | || ||||| | | |
Sbjct 364 GGCCGGAGATCCAATTCCGACCAACAATAGGCACAAGGCCG-TAAAAATCTTCGATC-AT 421
Query 385 CCCTAGTGTTG-TTGCCGAAGAAACATGGTACGGAATTGAGCAAGAGTACACTTTGCTGC 443
||| | || || || ||||| | |||| || || |||||||| ||||| || ||
Sbjct 422 CCC-AATG-TGAAGGCTGAAGAGCCTTGGTTTGGGATAGAGCAAGAATACACATTACTTA 479
Query 444 AAAAGGATATTAAGTGGCCGGTAGGTTGGCCGGTCGGCGG-TTTCCCAGGTCCTCAGGGA 502
|||| ||| | |||||||| |||||||||| | || || ||| || ||||||||||||
Sbjct 480 AAAAAGATGTGAAGTGGCCACTAGGTTGGCCTCTTGGTGGCTTT-CCTGGTCCTCAGGGA 538
Query 503 CCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTTGGAAGAGACATCGTAGATTCTCAT 562
|||||||| |||| ||| || ||||||||||| ||||| | ||||| || ||| ||||
Sbjct 539 CCGTACTATTGTGCAGTAGGTGCAGACAAAGCTTTTGGTCGTGACATTGTCGATGCTCAC 598
Query 563 TACAAAGCTTGTCTTTACGCCGGAATCGA-TGTCAGTGGAACTAACGGCGAAGTGATGCC 621
|| ||||||||||| ||| |||| | || | | |||| | || || ||||| |||||
Sbjct 599 TATAAAGCTTGTCTATACTCCGG-TTTGAGTATTGGTGGTGCCAATGGTGAAGTCATGCC 657
Query 622 CGGCCAGTGGGAGTTCCAAGTTGGTCCCACCGTTGGAATCGCTGCCGCAGATCAGGTCTG 681
|| || |||||||| ||| | |||| || ||||| || | ||| | ||||| | ||
Sbjct 658 TGGACAATGGGAGTTTCAAATCAGTCCTACTGTTGGTATTGGTGCAGGTGATCAATTATG 717
Query 682 GGTCGCTCGTTACATCCTTCAGAGGATCACAGA-AT-TGGCTGGAGTTGTTCTGTCTC-T 738
||| ||||||||||| ||| ||||||| || || || | || || | || | |||||| |
Sbjct 718 GGTTGCTCGTTACATTCTTGAGAGGATTACTGAGATAT-GC-GGTG-TGAT-TGTCTCAT 773
Query 739 T-GACCCTAAACCAATTCC-GGGAGATTGGAATGGTGCAGGGGCACACAC-AAATTACAG 795
| || || ||||||| ||| ||| ||||||||||| |||| || || || || || |||
Sbjct 774 TCGATCCAAAACCAA-TCCAGGGTGATTGGAATGGAGCAGCCGCTCATACGAACTT-CAG 831
Query 796 TACGAAGTCGATGA-GAGAAGATGGAGGGTAC--GAGGTCATAAAGAAAGCGATAGAGAA 852
||| || ||||||| || |||||||| || || || | || ||| |||| ||| ||||
Sbjct 832 TACAAAATCGATGAGGA-AAGATGGA-GG-ACTGGATTTGATTAAGGAAGCAATAAAGAA 888
Query 853 GCTTGGATTGCGTCACAAGGAACACATTGCTGCTTATGGTGAAGGCAATGAGCGTCGTCT 912
||||| | || ||||| |||||||||||||||||||||||||||| ||| | |||||
Sbjct 889 GCTTGAAGTGAAACACAAACAACACATTGCTGCTTATGGTGAAGGCAACGAGAGGCGTCT 948
Query 913 CACAGGAAAACATGAGACCGCCGATATCAACACTTTCT-TATGGGGTGTGGCAAACCGAG 971
||| || || ||||| || || || ||||||||||||| | ||||| ||||| | || |
Sbjct 949 CACTGGGAAGCATGAAACTGCAGACATCAACACTTTCTCT-TGGGGAGTGGCGGATCGTG 1007
Query 972 GGGCATCGATTAGGGTTGGGCGTGACACTGAGAAGGCTGGAAAAGGATACTTTGAAGATC 1031
| |||||| | || || || | || || ||||| | || ||||| || ||||||||||
Sbjct 1008 GAGCATCGGTGAGAGTAGGAAGAGATACGGAGAAAGAAGGTAAAGGGTATTTTGAAGATC 1067
Query 1032 GTAGGCCAGCTTCGAACATGGATCCTTACACT-GTAACCTCCATGATTGCTGAATCCACA 1090
| ||||| | || || |||||||||||| || || |||||||||||||||||| ||||
Sbjct 1068 GAAGGCCTTCGTCTAATATGGATCCTTAC-CTAGTTACCTCCATGATTGCTGAAACCACC 1126
Query 1091 ATCCT 1095
|||||
Sbjct 1127 ATCCT 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60391255635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5