BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488520
Length=2396
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16610.2 | Symbols: | unknown protein; Has 35333 Blast hits... 3127 0.0
> AT5G16610.2 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:5444964-5448313
REVERSE LENGTH=2390
Length=2390
Score = 3127 bits (1693), Expect = 0.0
Identities = 2199/2430 (90%), Gaps = 87/2430 (4%)
Strand=Plus/Plus
Query 1 AACTTGTCGATCAGTGAGAGCGTCTCAATTTCAGTGTTTCATCGAATTTG-TAGAGAGTT 59
||||||| |||||| ||||||||||||||||||||||||||||||| || | ||| |||
Sbjct 1 AACTTGTTAATCAGTAAGAGCGTCTCAATTTCAGTGTTTCATCGAATATGCT-GAGGGTT 59
Query 60 TCGACAATCTGAGA----T-T-C------T-ATGTCCAAAGGAGATTACTTTCTTCATTC 106
|||||||||||||| | | | | |||||||||||||||| ||||||||||||
Sbjct 60 TCGACAATCTGAGATTCTTCTCCTTGTGTTCATGTCCAAAGGAGATTCCTTTCTTCATTC 119
Query 107 TCCTTACCTTCTCAACAAACCCTTCTCTCTTATTACCTAATTCGCTTTTGTAG-T-TATT 164
|||||||||||| |||||||||||||||||||||| ||||||||||||||||| | || |
Sbjct 120 TCCTTACCTTCTTAACAAACCCTTCTCTCTTATTATCTAATTCGCTTTTGTAGCTCTA-T 178
Query 165 A-TC---TAG-AAATTTTGGGAAATCGAAATCTCTATCATATCAAATTTCTTCAGTCTCC 219
| | ||| ||| ||| || | |||||||| || ||| ||| ||||||||||||||
Sbjct 179 ACGCAATTAGCAAA-TTT-GG--A--GAAATCTCGATTATAGCAATTTTCTTCAGTCTCC 232
Query 220 ATGTACTTATTATCCTCTGTATTA--C--A-T-GTAT-AATAAGATGTGCCATGAACCTA 272
|||||| | || |||||||||||| | | | || |||||||||||||||||||||
Sbjct 233 ATGTAC-T-TT-TCCTCTGTATTACTCTAATTCAAATGTATAAGATGTGCCATGAACCTA 289
Query 273 CCAACATCTCTTCGTCGGAGTCTGATTTTATATTCCCTGACGAAGACCACCTCCCCTTGA 332
||||||||||||| |||||||||||||||| ||||| ||| |||||||| ||||||||||
Sbjct 290 CCAACATCTCTTCATCGGAGTCTGATTTTACATTCCTTGAGGAAGACCATCTCCCCTTGA 349
Query 333 CGTCACGCCGGAGTTTATTGCTATCGAGTGAAAGAGTCTCTCAACGTATCGCTGCTTCTG 392
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 350 CGTCACGGCGGAGTTTATTGCTATCGAGTGAAAGAGTCTCTCAACGTATCGCTGCTTATG 409
Query 393 TTCCTGCATCGATTGTTGATAGTATCTCGAAAAGAGAAGGAGAAGAAGAAGAAAATTGCG 452
|||||||||||| |||||||||| ||| | | | || |||||||||||| |||||
Sbjct 410 TTCCTGCATCGAATGTTGATAGTGTCTTG---A-A-AA-GAGAAGAAGAAG---ATTGCT 460
Query 453 TCAATGAGCTGGGAGTAGTGTCAAATTGTGATGCTACGGAATCTGTAAACACAGAAATAT 512
||||||||||||| ||||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 461 TCAATGAGCTGGGTGTAGTGTCAAATTGTGATGCTACTGAATCTGTAAGCACGGAAATAT 520
Query 513 TGGAATCTACGAGCATTGGTTGTAGTCAAGGTCTTAACGAGTCGGGAAACCTAAGACCAC 572
||||||||| || |||||||||||||||||||||||| || || |||||| |||||||||
Sbjct 521 TGGAATCTATGAACATTGGTTGTAGTCAAGGTCTTAAAGATTCTGGAAACATAAGACCAC 580
Query 573 AGAACAACATTCTAGTATGCTGTAGTAATGCCGAAGAGAATTTCAAAAGAGTCGAAGAAA 632
||||||||||||||| ||| ||||||||||| | ||||||||| || ||||||| |||||
Sbjct 581 AGAACAACATTCTAGGATGTTGTAGTAATGCTGTAGAGAATTTTAATAGAGTCGGAGAAA 640
Query 633 CTGAAAGGAGTGATGATCTTGAACATCTCACACTGAAGGAGCGGCGCAAAATGCTTCTTG 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 CTGAAAGGAGTGATGATCTTGAACATCTCACACTGAAGGAGCGGCGCAAAATGCTTCTTG 700
Query 693 AAAGGGTGGCTATAAGGTTGCCAGAATCTAACCTAGAGGATAATACTAAAGATTGCGATG 752
||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||
Sbjct 701 AAAGGGTTGCTATAAGGTTGCCTGAATCTAACGTAGAGGATAATACTGAAGATTGCGATG 760
Query 753 AAACTGATCTTTATAAAATAAAAGCTGAGATTTCATGCGAAAATGGGATAGCTTCGTCTT 812
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 761 AAACTGAACTTTATAAAATAAAAGCGGAGATTTCATGCGAAAATGGGATAGCTTCGTCTT 820
Query 813 CTGGGGTCCAATTCAGCGGCTTTCTAGAGAAAATTGATTCTGTCCTCTGTAAAAATTATA 872
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 821 CTGGAGTCCAATTCAGCGGCTTTCTAGAGAAAATTGATTCTGTCCTCTGTAGAAATTTTA 880
Query 873 GTATAGGTTCAAAATCTGGAAGTCAGCTTAATGGAATTCAAGAGAGTGATATTCCAATTT 932
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 881 GTATATGTTCAGAATCTGGAAGTCAGCTTGGTGGAATTCAAGAGAGTGATATTCCAATAT 940
Query 933 CTCATGAACGG-CCGTTTGGTTTGTCACCTGAAGCCAGTTTACCTGAGGTATCCAGTAGA 991
||| ||||||| || |||| ||||||||||||||||||| |||||||||||||||| ||
Sbjct 941 CTCCTGAACGGTCC-TTTGATTTGTCACCTGAAGCCAGTCTACCTGAGGTATCCAGCAGC 999
Query 992 GATGACGAACACTCTCCGTTAGGTAGCAACGAAAATCCGAGAAAAAGTGTGAAAAGAGTC 1051
| || || | || | | || || ||| ||| || |||||||||
Sbjct 1000 -A--ACAAAAA-TC-C----A---AG-AA--AAA----GAG------TG--AAAAGAGTC 1032
Query 1052 AAAAGGAATCATCCGCCTTTGAATGTGTATGAACTACAGTCTACTCAAGTTAAAGCT-GA 1110
||||||||| || |||||||||| | ||||| |||||||||||||||| |||| | ||
Sbjct 1033 CAAAGGAATCCTCTACCTTTGAATGAGAATGAAATACAGTCTACTCAAGT-AAAGGTTGA 1091
Query 1111 TCCTTTGGGTGATTGTGTCATGGAGAACAACGACGAGAGAAATCCTGTTACCTCAGAGCA 1170
|||||||| |||||| ||||||||| |||| ||||||| |||||||||||||||| ||||
Sbjct 1092 TCCTTTGGCTGATTGCGTCATGGAGGACAATGACGAGAAAAATCCTGTTACCTCAAAGCA 1151
Query 1171 GATACCGGTCAAAAGAGAGGTAGAAACGCATGGTGAAGCCCTTGATGAAAATGAGCTAGA 1230
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1152 GATACCGGTCAAAAGAGAGGTAGAAACCCATGGTGAAGCTCTTGATGAAAATGAGCTAGA 1211
Query 1231 TTCTGTGAAATTGAGCTTTCGCTTGAATCGTTGTACATCTGCTCCGAAACCGTCTAGGTG 1290
|||||||||| |||||||||||||||||||||||||||||||||| | ||| | ||||||
Sbjct 1212 TTCTGTGAAACTGAGCTTTCGCTTGAATCGTTGTACATCTGCTCCTACACCTTTTAGGTG 1271
Query 1291 TATGAAAAACGAAGCAGAGACCGCTAGTGAATTGGATGAAGATGAG-ATAGACCACATGA 1349
||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 1272 TATGAAAAACGAAGCGGAGACCGCTAGTGAAATGGATGAAGAT-ATTATAGACCACATGA 1330
Query 1350 AATTAATTGATCGATTAAAGCTTCGATCTTTTCATGGTTCAGGTCATCATGAAGATCTTA 1409
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1331 AATTAATTGATCGATTAAAGCTTCGATCTTTTCATGGCTCAGGTCATCATGAAGATCTTA 1390
Query 1410 ATTCTCCGTCCTCAGGGTTTAGCTTCTGTACATCTGATGAATACGTTAAACCTTCAAGGG 1469
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1391 ATTCACCGTCCTCAGGGTTTAGCTTCTGTACATCTGATGAGTACGTTAAACCTTCGAGGG 1450
Query 1470 TATTTCGTCCTTGGAAGCGTAAGAAAACCGCTACGGACTCAATTGAGACGGCTCTGGAGG 1529
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 1451 TATTTCGTCCTTGGAAGCGGAAGAAAACCGCCACGGACTCAATTGAGACAGCTTTGGAGG 1510
Query 1530 AAGATGCTCCTGGTCTTTTGCAGGTACTGATTCAACAAGGGGTCTCAGTTGATGAACTTA 1589
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1511 AAGATGCTCCTGGTCTTTTGCAGGTACTGATTCAACAAGGGGTAACAGTTGATGAACTTA 1570
Query 1590 GGCTTTATGGGAATGAAGGTGGTGATGTTTCCTCAGATGATTCACTTCTCGACGAGAGTT 1649
|||||||||||||||||||||| |||||| |||||||||||||||||||| | |||||||
Sbjct 1571 GGCTTTATGGGAATGAAGGTGGCGATGTTCCCTCAGATGATTCACTTCTCAATGAGAGTT 1630
Query 1650 TCTCGGAGCTCGAAGATGTGATCTCGCAGCTTTTCTTCAAACGCGAGACGGGCACAAAAC 1709
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1631 TCTCGGAGCTCGAAGATGTGATCTCGCAGCTTTTCTACAAACGCGAGACGGGCACGAAAC 1690
Query 1710 TTCTTAATTCAAGTTTCTCAAAAGTTTCAAGAACTAGCTATTGCTTGACCTGTCTGTTCT 1769
| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1691 TACTTAATTCAAGTTTCTCAAAAGCTTCAAGAACTAGCTATTGCTTGACCTGTCTATTCT 1750
Query 1770 CCCTCATCGAACAGGCGCGGTATTTACAGTTCCGCAAATGGCCTGTTGAGTGGGGCTGGT 1829
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1751 CCCTCATCGAACAGGCGCGGTATTTGCAGTTCCGCAAATGGCCTGTTGAGTGGGGCTGGT 1810
Query 1830 GCCGTGATCTCCAGTCTTTCATATTTGTTTTCGAGAGACATAACCGTATAGTAATGGAAC 1889
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1811 GCCGCGATCTCCAGTCTTTCATATTCGTTTTCGAGAGACATAACCGTATAGTAATGGAAC 1870
Query 1890 GACCTGAATATGGCTACGCAACATACTTCTTCGAGCTCAGCAACACTGCATCAATCAGAT 1949
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1871 GGCCTGAATATGGCTACGCAACATACTTCTTCGAGCTCAGCAATACTGCATCAATCAGAT 1930
Query 1950 GGCAGATAAAACGGTTAGTCTTGGCCATGAAACTAGCAAGCTGTGGCCGATATCAGCTGA 2009
||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1931 GGCAGGTCAAACGGTTAGTCTTGGCCATGAAACTAGCAAGTTGTGGCCGATATCAGCTGA 1990
Query 2010 TTGAAAACAAGCCGTTACTGGTAGGAGAAGATATGACTGAAGGCGAAGCAGAAGTGCTGA 2069
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1991 TTGAAAACAAGCCGTTACTGGTAGGAGAAGATATGACTGCAGGCGAAGCAGAAGTTCTGA 2050
Query 2070 TGAAGTACGGTTGGGTAGCAAACACGGGACTAGGGACGATGGTAAACTACCGCGATAGAG 2129
| |||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2051 TTAAGTACGGCTGGGTTGCAAACACGGGACTAGGGACGATGCTAAACTACCGCGATAGAG 2110
Query 2130 TCTACCATGACAGGAAGACCCAAAAGCAGACATCAGTATGGAGATGTAAGATTTCTGAGC 2189
||||||| ||||||||||||||||| | |||||||| |||||||| ||||||||||||||
Sbjct 2111 TCTACCACGACAGGAAGACCCAAAAACCGACATCAGAATGGAGATCTAAGATTTCTGAGC 2170
Query 2190 TTCTTGTCGATGGCTATAACAGTGGAACCATCGTCTCAACTTTCATTGCCCCCCatgatg 2249
||||| | ||||||||||||||||||||||||||||| ||| | ||||| || |||||||
Sbjct 2171 TTCTTATTGATGGCTATAACAGTGGAACCATCGTCTCTACTCTAATTGCACCTCATGATG 2230
Query 2250 atgatgatgttgatgatgCCGGACTTGGGATGGGAGATGTTAAGCTTGAGCCTTATTGAA 2309
||||| || | ||||| |||||||||| |||| ||||||||||||||||||||||||||
Sbjct 2231 ATGAT-AT-T-GATGACGCCGGACTTGACATGGAAGATGTTAAGCTTGAGCCTTATTGAA 2287
Query 2310 GCTGTGAATCTGTTATAGAGTCTTC---AACTGTTGATTGTTTATTTACTTGGTCAACTA 2366
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 2288 GCTGTGAATCTGTTATAGAGTCTTCTTCAACTGTTGATTGTTTATTTACTTGGTCAGCTA 2347
Query 2367 AATTTAATCGAACCATTAACTTCAATAAGC 2396
|||||||||| | || |||| ||||||||
Sbjct 2348 AATTTAATCGGATCACAAACTACAATAAGC 2377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118975291650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5