BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488521
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16620.1 | Symbols: PDE120, TIC40, ATTIC40 | hydroxyproline-... 2608 0.0
> AT5G16620.1 | Symbols: PDE120, TIC40, ATTIC40 | hydroxyproline-rich
glycoprotein family protein | chr5:5450696-5454535 FORWARD
LENGTH=1735
Length=1735
Score = 2608 bits (1412), Expect = 0.0
Identities = 1546/1609 (96%), Gaps = 15/1609 (1%)
Strand=Plus/Plus
Query 1 CTTCTTCCTCATCATATCTTTCCTCCTCTTCACCAGAA-TCGTTTCAGGCTCTTCTTCTT 59
|||||||||||||||||||||| || ||| |||||||| | |||| ||||||| ||||||
Sbjct 20 CTTCTTCCTCATCATATCTTTCATCTTCTCCACCAGAATTTGTTTTAGGCTCTCCTTCTT 79
Query 60 CTGTTTCTTTTTCT-CCAAAGAAACAATTAGAAATGGAGAACCTAACCCTAGTTTCTTGC 118
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 80 CTGTTTCTTTTTCTCCCAAAGAAACAATTAGATATGGAGAACCTTACCCTAGTTTCTTGC 139
Query 119 TCAGCTTCTTCTCCAAAGCTGTTAATTGGATGCAATTTCACTTCCTCGCTTAAAAACCCT 178
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 140 TCAGCTTCTTCTCCAAAGCTGTTAATTGGATGCAATTTCACTTCCTCGCTGAAAAACCCT 199
Query 179 ACTGGGTTTTCTCGTCGGACTCCTAAAATTGTCCTCCGCTGCTCCAAAATCTCTTCCTCT 238
|||||||||||||||||||||||||| ||||||||||| || |||||||| ||| |||||
Sbjct 200 ACTGGGTTTTCTCGTCGGACTCCTAATATTGTCCTCCGGTGTTCCAAAATATCTGCCTCT 259
Query 239 GCTCAATCTCAATCTCCCTCTTCGCGTCCGGATAACGTTGGAGAAATCGTGGTTGTGAAA 298
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 260 GCTCAATCTCAATCTCCCTCTTCGCGTCCGGAGAACACTGGAGAAATCGTGGTTGTGAAA 319
Query 299 CAGAGAAGCAAAGCTTTTGCAAGTATATTTTCATCGAGTCGTGATCAACAGACAACTTCT 358
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 320 CAGAGAAGCAAAGCTTTTGCAAGTATATTTTCTTCGAGTCGTGATCAACAGACAACTTCT 379
Query 359 GTTGCTTCCCCTAGTGTGCCTATGCCACCACCATCTTCATCAACCATAGGATCACCACTT 418
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 380 GTTGCTTCCCCTAGTGTGCCTGTGCCACCACCATCTTCATCAACCATAGGATCACCACTT 439
Query 419 TTCTGGATTGGTGTTGGAGTTGGGCTATCAGCTTTGTTCTCAT-TGGTAACTTCAAATTT 477
||||||||||||||||| ||||| ||||||||||||||||||| | ||||||||||||||
Sbjct 440 TTCTGGATTGGTGTTGGTGTTGGTCTATCAGCTTTGTTCTCATAT-GTAACTTCAAATTT 498
Query 478 AAAGAAATATGCAATGCAAACAGCTATGAAGACGATGATGAACCAAATGAATACGCAAAA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 AAAGAAATATGCAATGCAAACAGCTATGAAGACGATGATGAACCAAATGAATACGCAAAA 558
Query 538 TAGCCAGTTTAATAATCCTGGATTCCCATCAGGATCACCTTTTCCGTTTCCATTCCCTCC 597
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 559 TAGCCAGTTTAATAATTCTGGATTCCCATCAGGATCACCTTTTCCGTTTCCATTTCCTCC 618
Query 598 TCAAACAAGTCCTGCCTCCTCGCCCTTCCAATCTCAATCCCAGTCTTCAGGTGCTACTGT 657
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 619 TCAAACAAGTCCTGCTTCCTCGCCATTCCAATCTCAATCCCAGTCTTCAGGTGCTACCGT 678
Query 658 TGATGTGACGGCGACAAAAGTAGATACACCTCCTTCAACTAAACCGAAACCTACACCTGC 717
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 679 TGATGTGACAGCGACAAAAGTAGAGACACCTCCTTCAACTAAACCGAAACCTACACCTGC 738
Query 718 AAAGGATATAGAAGTGGATAAGCCAAGTGTTGTCTTAGAGGCAAGCaaagagaagaaaga 777
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AAAGGATATAGAGGTGGATAAGCCAAGTGTTGTCTTAGAGGCAAGCAAAGAGAAGAAAGA 798
Query 778 agaaaagaaCTATGCCTTTGAAGACATTTCACCCGAGGAAACCACCAAAGAAAGCCCATT 837
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 799 AGAAAAGAACTATGCCTTTGAAGACATTTCACCCGAGGAAACCACAAAAGAAAGCCCATT 858
Query 838 TAGCAACTATGCTGAAGTCTCTGAAACTAGTTCCCCCAAAGAAACTCGCTTGTTTGAGGA 897
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 859 TAGCAACTATGCAGAAGTCTCTGAAACTAATTCCCCCAAAGAAACTCGCTTGTTTGAGGA 918
Query 898 TGTTTTGCAAAATGGAGCTGGTCCGGCAAATGGTGCCACTGCTTCAGAGGTTTTTCAATC 957
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 TGTCTTGCAAAATGGAGCTGGTCCGGCAAATGGTGCCACTGCTTCAGAGGTTTTTCAATC 978
Query 958 TTTGGGCGGTGGGAAAGGAGGGCCGGGTTTGTCTGTAGAAGCTTTAGAGAAAATGATGGA 1017
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 979 TTTGGGTGGTGGGAAAGGAGGGCCGGGTTTATCTGTAGAAGCTTTAGAGAAAATGATGGA 1038
Query 1018 AGATCCAACAGTCCAGAAGATGGTTTACCCATACTTGCCTGAGGAGATGAGAAACCCAGA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1039 AGATCCAACAGTCCAGAAGATGGTTTACCCATACTTGCCTGAGGAGATGAGGAACCCAGA 1098
Query 1078 AACTTTCAAATGGATGCTTAAAAATCCTCAGTACCGTCAACAGCTACAGGACATGTTGAA 1137
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1099 AACTTTCAAATGGATGCTTAAAAATCCTCAGTACCGTCAACAACTACAGGACATGTTGAA 1158
Query 1138 TAATATGAGTGGGAGTGGTGAATGGGACAAGCGAATGACAGATACATTGAAGAATTTTGA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 TAATATGAGTGGGAGTGGTGAATGGGACAAGCGAATGACAGATACATTGAAGAATTTTGA 1218
Query 1198 CCTGAATAGTCCTGAAGTGAAGCAACAATTCAATCAAATAGGACTGACTCCAGAAGAAGT 1257
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1219 CCTGAATAGTCCTGAAGTGAAGCAACAATTCAATCAAATAGGACTAACTCCAGAAGAAGT 1278
Query 1258 CATATCTAAGATCATGGAGAACCCTGATGTTGCCATGGCATTCCAGAATCCTAGAGTCCA 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 CATATCTAAGATCATGGAGAACCCTGATGTTGCCATGGCATTCCAGAATCCTAGAGTCCA 1338
Query 1318 AGCAGCATTAATGGAATGCTCAGAGAACCCAATGAACATCATGAAGTACCAAAACGACAA 1377
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 AGCAGCGTTAATGGAATGCTCAGAGAACCCAATGAACATCATGAAGTACCAAAACGACAA 1398
Query 1378 AGAGGTAATGGATGTGTTCAACAAGATATCGCAGCTCTTCCCAGGAATGACGGGTTGAAA 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 AGAGGTAATGGATGTGTTCAACAAGATATCGCAGCTCTTCCCAGGAATGACGGGTTGAAA 1458
Query 1438 AAGCTCACGTCTTTTGG----ATCAAAAATGTCACATTGTCTTTAGCTTTTTGTAGG-AG 1492
|||||||||||||| || |||||||||||||||||||||||||||||||||||| ||
Sbjct 1459 AAGCTCACGTCTTT-GGTTCTATCAAAAATGTCACATTGTCTTTAGCTTTTTGTAGGGAG 1517
Query 1493 AAAATTATGttttttttAAA--AAAG-GATCTTCAGTTTTGTTCAGATCAGAGAATTGTG 1549
|||| ||||||||||| |||| | |||||||||||| ||||||||||||||||||
Sbjct 1518 AAAAAAATGTTTTTTTTTTTGCAAAGAG-TCTTCAGTTTTGGTCAGATCAGAGAATTGTG 1576
Query 1550 TACCATGTTAATCTTAAACGCGATCGCGAATTCGAGTCGTGT-AAAACG 1597
|||||||||||||||||||||| ||| ||||| ||||||||| ||||||
Sbjct 1577 TACCATGTTAATCTTAAACGCGGTCGGGAATTGGAGTCGTGTGAAAACG 1625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78965457285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5