BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488523
Length=1920
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16640.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2721 0.0
> AT5G16640.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:5460976-5463017 FORWARD LENGTH=2042
Length=2042
Score = 2721 bits (1473), Expect = 0.0
Identities = 1737/1863 (93%), Gaps = 24/1863 (1%)
Strand=Plus/Plus
Query 3 GAGATTGAGAGCGAAAACTCAAGCTTCGAAGCATGAGGAGATCAATTTCTTCAAAAGCGA 62
|||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 24 GAGATTGAGAACGAAAACTCAAGCTTTGAAGCATGAGGAGATCGATTTCTTCAAAAGCGA 83
Query 63 AGTCGTTTCTTCATCGGAATCTTCTGGAGAAAGGTAATTCCGGAACTTCTCCGTCGTCGT 122
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 84 AGTCGTTTCTTCATCGGAATCTTCTCTATTCAGGTAATTCCGGAACTTCTCCGTCGTCGT 143
Query 123 CGTTTAGCATTTGCGGTTTGTGTTTCTCGAGACGAGCTTATTCCGGTGGCAGTGATTATC 182
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 144 CGTTTAGCATTTGCGGTTTCTGTTTCTCGAGACGAGCTTATTCTAATGGCAGTGATTATC 203
Query 183 GAGAAATGTTGAGAAATGGGATTCGATATATGAAACTAGACGATTCGCTTGATCTCTTCT 242
||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||
Sbjct 204 GAGAAATGTTGAGAAATGGGATTCGGTTTATGAAACTAGACGATTCTCTTGATCTCTTCT 263
Query 243 TTCACATGGTTCAGTGTCGTCCTCTTCCGTCAATTGCTGATTTTAGTAGATTATTAAGTG 302
||||||||||||| |||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 264 TTCACATGGTTCAATGTCGTCCTCTTCCTTCAATTGCTGATTTCAGTAGATTACTAAGTG 323
Query 303 CTATTTCCAAGATGAAGAAGTATGATGTTGTGATCTATCTCTGGGAACAAATGCAAATGT 362
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 324 CTATTTCCAAGATGAAGAAGTATGATGTTGTGATCTATCTCTGGGAACAGATGCAAATGT 383
Query 363 TGGGGATTCCACATAATCTCTGTACTTGCAATATCTTGTTGAATTGTTTCTGTCGATGTT 422
| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 384 TAGGGATTCCACATAATCTCTGTACTTGCAATATCTTATTGAATTGTTTCTGTAGATGTT 443
Query 423 CTCAGCTTTCTCTTGCGTTGTCGTTTCTTGGGAAGATGATGAAACTTGGTCATGAGCCTG 482
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 444 CTCAGCTTTCTCTTGCGTTATCGTTTCTTGGGAAGATGATTAAACTTGGTCATGAGCCT- 502
Query 483 A-CATTGTCACGTTTGGCTC-TCTGCTTAACGGTTTCTGTCGCGGTGATAGGATTAACGA 540
| |||||||||||||||||| | ||||||||||||||||||||||||||||| || ||||
Sbjct 503 AGCATTGTCACGTTTGGCTCGT-TGCTTAACGGTTTCTGTCGCGGTGATAGGGTTTACGA 561
Query 541 TGCTTTGTATATGTTTGATCGAATGGTAGAAATGGGATATGAA-CCTAATGTTGTGATCT 599
|||||||||||||||||||| |||||| | |||||||||| || ||||||||||||||||
Sbjct 562 TGCTTTGTATATGTTTGATCAAATGGTGGGAATGGGATAT-AAGCCTAATGTTGTGATCT 620
Query 600 ACAATACAATCATTGATGGTCTTTGCAAAAGCAAACAGGTGGATAACGCGTTGGATCTTT 659
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 621 ACAATACAATCATTGATGGTCTTTGCAAAAGCAAGCAGGTTGATAACGCGTTGGATCTTT 680
Query 660 TGAACCGGATGGAGGTAGATGGGATTAGACCGGACGCT-GTTACCTACAACTCTCTTATT 718
| |||||||||||| ||| |||||| ||||||| | | ||||||||||| ||||||||
Sbjct 681 TAAACCGGATGGAGAAAGACGGGATTGGACCGGATG-TGGTTACCTACAATTCTCTTATA 739
Query 719 TCTGGACTTTGTAATTCGGGTAGATGGGA-TGATGCTACTCGAATGGTCAGCTGTATGAC 777
||||||||||||| |||||| || | ||| |||||||||||||||||| |||||||||||
Sbjct 740 TCTGGACTTTGTAGTTCGGGGAGGT-GGAGTGATGCTACTCGAATGGTAAGCTGTATGAC 798
Query 778 CAAGAGGGAAATCTACCCTGATGTATTTACTTTCAATGCGTTGATTGATGCTTGTGTGAA 837
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 CAAGAGGGAGATCTACCCTGATGTATTTACTTTCAATGCGTTGATTGATGCTTGTGTGAA 858
Query 838 AGAAGGAAGGATTTCTGAGGCTGAAGAATTGTACGAGGAGATGATCCGAAGATCTCTGGA 897
|||||||||| |||| |||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 859 AGAAGGAAGGGTTTCAGAGGCTGAAGAATTTTATGAGGAGATGATCCGAAGATCTTTGGA 918
Query 898 TCCTGATATTGTTACTTATAGTTTACTGATTTACGGGCTTTGCATGTACAGTCGCCTAGA 957
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 919 TCCTGATATTGTTACTTATAGTTTACTGATTTACGGGCTTTGTATGTACAGTCGCCTAGA 978
Query 958 TGAAGCAGAGCAAATGTTTGGTTTCATGGTTAGCAAGGGCTGCTTTCCAGATGTTGTAAC 1017
|||||||||| ||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 979 TGAAGCAGAGGAAATGTTTGGTTTTATGGTTAGCAAAGGTTGCTTTCCAGATGTTGTAAC 1038
Query 1018 TTATAGTATTCTCATTAATGGATATTGCAAGTCTAAGAAGGTAGAGCATGGGATGAAACT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 TTATAGTATTCTCATTAATGGATATTGCAAGTCTAAGAAGGTAGAGCATGGGATGAAACT 1098
Query 1078 CTTCTGCGAGATGTCCCAGAGAGGAGTGGTTAGAAATACAGTCACTTATACAGTTCTTAT 1137
||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1099 CTTCTGCGAGATGTCTCAGAGAGGAGTGGTTAGAAATACAGTCACTTACACAATTCTTAT 1158
Query 1138 CCAGGGTTATTGTCGAGCGGGTAAACTTAATGTTGCCGAAGAAATTTTCAAACGGATGGT 1197
||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||
Sbjct 1159 TCAGGGTTATTGTCGAGCGGGTAAGCTTAATGTTGCTGAAGAAATTTTCAGACGGATGGT 1218
Query 1198 TTTTTGTGGTGTGCCTCCTAATATTATCACTTACAACGTTTTGTTGCATGGTCTATGCGA 1257
|||||||||||||| |||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 1219 TTTTTGTGGTGTGCATCCTAATATTATCACTTACAACGTTTTGTTACATGGTTTATGTGA 1278
Query 1258 TAATGGGAAGATAGAAAAAGCATTGGTGATATTGGCAGATATGCAGAAGAGTGGGATGGA 1317
||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1279 TAATGGGAAGATAGAGAAAGCATTGGTGATATTGGCAGATATGCAGAAGAATGGAATGGA 1338
Query 1318 TGCTGATATCGTTACATATAATATCATCATTCGCGGGATGTGTAAGGCTGGTGAGGTAGC 1377
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1339 TGCTGATATCGTTACGTATAATATCATCATTCGCGGGATGTGTAAGGCTGGTGAGGTTGC 1398
Query 1378 AGATGCTTGGGATTTATATTGTAGCCTCAATCT-CAAAGGACTAACGCCTGATATTTGGA 1436
||||||||||||| |||||||||| ||||| || | ||||| | | ||||||||||||||
Sbjct 1399 AGATGCTTGGGATATATATTGTAGTCTCAA-CTGCCAAGGATTGATGCCTGATATTTGGA 1457
Query 1437 CATACACTGCAATGATGTTAGGATTGTACAAGAAAGGGCTACGGGGTGAAGCAGATGCGC 1496
|||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1458 CATACACTACAATGATGTTAGGATTGTACAAGAAAGGACTACGGCGTGAAGCAGATGCGC 1517
Query 1497 TGTTTAGAAAAATGAAAGAAGATGGGATTTTGCCAAATGAATGTTACGTATAGTGAAGCT 1556
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1518 TGTTTAGAAAAATGAAAGAAGATGGGATTTTGCCAAATGAATGTTACGTATAGTGAGGCT 1577
Query 1557 AATTAGGACTAAG-AGCATCATCTTAAGTATCTCAGGGAAGCTTGCAAGATATTTTTATC 1615
| |||||||||| | ||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct 1578 TACTAGGACTAAGCA-CATTAGCTTAAGTATCTCAGGGAAGCTTGCAAGATATTTATATC 1636
Query 1616 CTGGTCAGGCTCCTTCCTATGAGATGTTTGCCCCTGGAAGCCAATTTTGGAATGAGCTAA 1675
| |||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1637 CGGGTCAGGCTCCTACCTGTGAGATGTTTACCCCTGGAAGCCAATTTTGGAATGAGCTAA 1696
Query 1676 TTTTCACATGTACCATAGAGATTGTGAATATTAGCGCATAAGCTGCATAGTATCATAGTC 1735
|||| | |||||||||| ||||| ||||||||||| ||||||||||||| |||||||
Sbjct 1697 TTTT-A---GTACCATAGATATTGTTAATATTAGCGCGTAAGCTGCATAGTGTCATAGTG 1752
Query 1736 GATTTATTGACAGACATTACAGTATCGAAGCTTGCATTGTATGTATAACCGGCT---CTC 1792
|||| ||||||||||||||||||||||||||||| |||||||||||| ||| | |||
Sbjct 1753 GATT-ATTGACAGACATTACAGTATCGAAGCTTGAATTGTATGTATAGCCGATTTGTCTC 1811
Query 1793 CGAGAGGATGTTTGCCCTTGAAATGA-TAAACGCAGGTCCTTCGAAACCAAGTTGGGATT 1851
|||||||||||||||||||||||||| ||| | ||||||||| ||||||||||||| |||
Sbjct 1812 CGAGAGGATGTTTGCCCTTGAAATGAATAA-CTCAGGTCCTTTGAAACCAAGTTGGAATT 1870
Query 1852 CTA 1854
|||
Sbjct 1871 CTA 1873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95079832230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5