BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488533
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16760.1 | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kina... 2313 0.0
> AT5G16760.1 | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kinase
family protein | chr5:5509674-5511232 FORWARD LENGTH=1559
Length=1559
Score = 2313 bits (1252), Expect = 0.0
Identities = 1484/1585 (94%), Gaps = 59/1585 (4%)
Strand=Plus/Plus
Query 1 AAAAAACCAAACTTTACGATTTTTCCTCTCTGGAATCTCTCGATTCTGTATGATCTCTTC 60
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1 AAAAAACCAAACTTTACGATTTCTCCTCTCTGGAA--TCTCGATTCTGTATGATCTCTTC 58
Query 61 GATCTAATCGAGT-TTTTAAAACGTTCCGTGTAGAATTGCACATCTAGGGTTTGCTAAAG 119
||||||||||||| || | ||||||||||||||||||| || ||||||||||||||||||
Sbjct 59 GATCTAATCGAGTCTTCT-AAACGTTCCGTGTAGAATTTCAAATCTAGGGTTTGCTAAAG 117
Query 120 CTTGAACCTTTCTT---C---TCT-TCGAAGAGGTTTTGATTTCCTGGGCATGAATTTTT 172
|||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||
Sbjct 118 CTTGAACCTTTCTTACCCTTTTCTCTCGAAGAGGTTTTGA-TTCCTGGGCATGAATTTTT 176
Query 173 CCCTAATCTTGTTACCTTTGAAGC---AGAAGAGCGAAAGATGTCAGATTCTTCAATCCA 229
|||||||||||||||||| ||||| | || | |||||||||||||| |||||||||
Sbjct 177 CCCTAATCTTGTTACCTTCGAAGCATAACAACAACGAAAGATGTCAGA---TTCAATCCA 233
Query 230 GGAAAGATACTTAGTTGGATACGCACTCGCAGCCAAGAAACAGCATAGTTTCATCCAACC 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GGAAAGATACTTAGTTGGATACGCACTCGCAGCCAAGAAACAGCATAGTTTCATCCAACC 293
Query 290 TTCTTTGATCGAACACTCAAGGCAACGAGGCATTGATCTGGTCAAGCTTGATCCGACGAA 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TTCTTTGATCGAACACTCAAGGCAACGAGGCATTGATCTGGTCAAGCTTGATCCGACGAA 353
Query 350 ATCGTTGTTGGAGCAAGGGAAGCTTGATTGCATAATCCACAAGCTTTACGATGTGTATTG 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 ATCGTTGTTGGAGCAAGGGAAGCTTGATTGCATAATCCACAAGCTTTACGATGTGTATTG 413
Query 410 GAAGGAGAATCTTCATGAGTTTCGTGAGAAATGTCCTGGTGTTCCTGTAATCGATTTGCC 469
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 414 GAAGGAGAATCTTCATGAGTTTCGCGAGAAATGTCCTGGTGTTCCTGTAATCGATTTGCC 473
Query 470 TGAGGCTATCGAGCGATTACACAATAGGGTTTCGATGCTTGAGGTGATAACTCAATTGAG 529
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TGAGGCTATCGAGCGATTGCACAATAGGGTTTCGATGCTTGAGGTGATAACTCAATTGAG 533
Query 530 GTTTCCTGTTTCAGATAGCGAGAGGTTTGGTGTTCCGGAGCAAGTTGTTGTTATGGATTC 589
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 534 GTTTCCTGTTTCAGATAGCGAGAGATTTGGTGTCCCGGAGCAAGTTGTTGTTATGGATTC 593
Query 590 GAGCGTCTTGAGCGGTGGAGGAGCTTTAGGGGAGCTTAAGTTTCCGGTGATTGCTAAGCC 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GAGCGTCTTGAGCGGTGGAGGAGCTTTAGGGGAGCTTAAGTTTCCGGTGATTGCTAAGCC 653
Query 650 GTTGGATGCTGATGGGAGTGCCAAATCTCATAAGATGTTTTTGATTTATGATCAAGAAGG 709
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 654 GTTGGATGCTGATGGGAGTGCTAAATCTCATAAGATGTTTTTGATTTATGATCAAGAAGG 713
Query 710 GATGAAGATTCTGAAAGCTCCGATTGTCTTGCAGGAGTTTGTGAATCATGGTGGTGTGAT 769
|||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 714 GATGAAGATTTTGAAAGCTCCTATTGTGTTGCAGGAGTTTGTGAATCATGGTGGTGTGAT 773
Query 770 CTTTAAGGTCTATGTGGTTGGAGATCATGTCAAATGTGTAAAGAGAAGATCTTTACCTGA 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CTTTAAGGTCTATGTGGTTGGAGATCATGTCAAATGTGTAAAGAGAAGATCTTTACCTGA 833
Query 830 TATCTCTGAAGAGAAGATTGGGACGTCGAAAGGGTCTCTTCCGTTTTCGCAGATATCGAA 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TATCTCTGAAGAGAAGATTGGGACGTCGAAAGGGTCTCTTCCGTTTTCGCAGATATCGAA 893
Query 890 TCTGACTGCTCAAGAAGACAAGAACATAGAGTATGGTGAGGATAGGAGCTTAGAGAAAGT 949
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 894 TCTGACTGCTCAAGAGGACAAGAACATTGAGTATGGTGAGGATAGGAGCTTAGAGAAAGT 953
Query 950 GGAGATGCCTCCATTGAGTTTCTTGACTGATCTAGCAAAGGCCATGAGGGAATCAATGGG 1009
||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 954 GGAAATGCCTCCGTTAAGTTTCTTGACAGATCTAGCAAAGGCCATGAGGGAATCAATGGG 1013
Query 1010 ACTCAATCTCTTTAACTTCGACGTGATTAGGGATGCGAAAGATGCTAATAGGTACCTAAT 1069
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1014 ACTCAATCTCTTTAACTTCGACGTGATTAGGGATGCCAAAGATGCTAATAGGTACCTTAT 1073
Query 1070 AATTGATATTAACTACTTTCCTGGATATGCTAAGATGCCCTCTTACGAGCCTGTATTGAC 1129
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1074 AATTGATATTAACTACTTTCCTGGATATGCTAAGATGCCCTCTTACGAGCCTGTGTTGAC 1133
Query 1130 GGAGTTCTTCTGGGACATGGTCACAAAGAAGAATCATGTCTGAGAAAGGAA-C------- 1181
||||||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct 1134 TGAGTTCTTCTGGGACATGGTCACTAAGAAGAATCATGTCTGAGAAAT-AATCTGTTGGG 1192
Query 1182 -A-TT-G--------TTGTTGGGGAGGATTTGTAACATTGCAATGTGTTGCAACTGCCAT 1230
| || | ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1193 GAGTTAGCAGGAACATTGTTGGGGAGGATTTGTACCATTGCAATGTGTTGCAACTGCCAT 1252
Query 1231 TGCAATTCTGGCCTATGGTGCCTAGCTGCTTTGCTAATTTTCATTTGGATTCTTGAACTT 1290
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TGCAATTCTGGCCTATGGTGACTAGCTGCTTTGCTAATTTTCATTTGGATTCTTGAACTT 1312
Query 1291 GTGCttttttttttttatatatttttttAGTTGTTTCTCTTTCGTTTACTTCCGAGTTTT 1350
||||||||| |||| |||||| |||||||||||||| |||||||||||||||||
Sbjct 1313 GTGCTTTTT-------ATAT-TTTTTT-AGTTGTTTCTCTTTTGTTTACTTCCGAGTTTT 1363
Query 1351 GCAAAGCCTTGTTCAAATGCACAACTGTTGCTACTCTTGAAAAGCATTGAATCTCTAAAT 1410
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1364 GCAAAGCCATGTTCAAATGCATAACTGTTGCTACTCTTGAAAAGCATTGAATCTCTAAAT 1423
Query 1411 TATTGGCATTGTGCTCTGTTCTCAACTGTTGGTACTTGGTTTTGTGATTTCTTTTCAAGC 1470
| |||||| |||| |||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 1424 TCTTGGCAATGTGGTCTGTTCTCAACTGTTGGTA---G-TTT-GTGATTTCTTTTCAAGC 1478
Query 1471 TTTTATGGTGCCTGTTTTC--C-TCAAGTCTGACAAGAGTTAGATAGTTGATTAAGCATT 1527
||||||||||||||||||| | |||| |||||||||| | ||||| |||||||||||||
Sbjct 1479 TTTTATGGTGCCTGTTTTCTTCCTCAAATCTGACAAGACTGAGATATTTGATTAAGCATT 1538
Query 1528 TTTGGCCATAAGGTGATTAGTAACC 1552
|| ||||| ||||||||||||
Sbjct 1539 ---GGT-ATAAGTTGATTAGTAACC 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76606031670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5