BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488535
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16770.1 | Symbols: AtMYB9, MYB9 | myb domain protein 9 | ch... 1613 0.0
AT3G02940.1 | Symbols: MYB107, AtMYB107 | myb domain protein 10... 599 2e-170
AT1G34670.1 | Symbols: AtMYB93, MYB93 | myb domain protein 93 |... 241 2e-62
> AT5G16770.1 | Symbols: AtMYB9, MYB9 | myb domain protein 9 |
chr5:5514884-5516936 FORWARD LENGTH=1284
Length=1284
Score = 1613 bits (873), Expect = 0.0
Identities = 1027/1098 (94%), Gaps = 23/1098 (2%)
Strand=Plus/Plus
Query 1 GATTGCCTTCATCAGAGTCTTTCTCCCTTGAGAGTTCTAGGAGATCTTCAACAGCTAGTA 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 GATTGCCTTCATCAGAATCTTTCTCCCTTGAGAGTTCTAGGAGATCTTCAACAGCTAGTA 68
Query 61 ATAATGGGGCGTTCACCATGTTGCGATGAGAATGGTCTAAAGAAAGGGCCATGGACACAA 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 ATAATGGGGCGATCACCATGTTGCGATGAGAATGGTCTAAAGAAAGGGCCATGGACACAA 128
Query 121 GAGGAGGATGAGAAACTGATTGATCACATTCAAACACATGGCCATGGCAGCTGGAGAGCT 180
||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 129 GAGGAGGATGATAAACTGATAGATCACATTCAAAAACATGGCCATGGCAGCTGGAGAGCT 188
Query 181 CTTCCGAAGCAAGCCGGTTTAAACCGATGCGGAAAGAGTTGTAGATTGAGATGGACTAAC 240
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 189 CTTCCAAAGCAAGCCGGTTTAAACCGATGCGGAAAGAGTTGTAGATTAAGATGGACCAAC 248
Query 241 TACTTGAGACCTGACATCAAGAGAGGAAATTTCACTGAAGAGGAAGAACAAACAATTATC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 249 TACTTGAGACCTGACATCAAGAGAGGAAATTTCACTGAAGAGGAAGAACAAACTATTATC 308
Query 301 AACCTCCATTCCCTTCTTGGAAACAAGTGGTCGTCGATAGCCGGTAATCTTCCTGGAAGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 AACCTCCATTCCCTTCTTGGAAACAAGTGGTCGTCGATAGCCGGTAATCTTCCTGGAAGA 368
Query 361 ACGGACAATGAAATAAAAAACTATTGGAACACACATTTGAGAAAGAAACTTCTCCAAATG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 ACGGACAATGAAATAAAAAACTATTGGAACACACATTTGAGAAAGAAACTTCTCCAAATG 428
Query 421 GGGATTGATCCGGTGACCCATAGGCCAAGAACCGACCATCTAAACGTTTTAGCTGCTCTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 429 GGGATTGATCCGGTGACCCATAGGCCAAGAACCGACCATCTAAACGTTTTAGCAGCTCTC 488
Query 481 CCGCAGCTTATAGCCGCCGCAAATTTCAACAGCCTCTTGAATCTCAATCAAAACGTGCAA 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 489 CCGCAGCTTATAGCCGCCGCAAATTTCAACAGCCTCTTGAATCTCAACCAAAATGTGCAA 548
Query 541 GTGGATGCAACAACTCTTGCTAAAGCTCAACTTTTACACACTATGATTCAAGTCCTTGGC 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 549 CTGGATGCAACAACTCTTGCTAAAGCTCAACTGCTACACACTATGATTCAAGTCCTTAGC 608
Query 601 ACCAATAACAACACCA--A-TCCTTCTTTTTCTTCATCAACTATGCAAAACAGTAGCA-- 655
|||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 609 ACCAATAACAACACCACCAATCCTTCTTTTTCTTCATCAACTATGCAAAACAGTAACACC 668
Query 656 A-TCTCTTTGGCCAATCTTCTTACTTAGAGAACCAAAATCATTTTGGTCAGTCTCAAAAC 714
| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 669 AATCTCTTTGGCCAAGCTTCTTACTTAGAGAACCAAAATCTTTTTGGTCAGTCTCAAAAC 728
Query 715 TTCTCCCACATTCTTGAGAACAATCATGATGAGCATTTGATGGTAAAAAGCCAAATTATG 774
||||| |||||||||||| | | || || |||||||||| |||| |||||||||
Sbjct 729 TTCTCTCACATTCTTGAGGA---T---GA-GA--ATTTGATGGTCAAAACCCAAATTATT 779
Query 775 GATCACCCTTTGGAATCTTTTTCTTCCCTGCTGATACAACCCGATTTTCAAGATGACCAT 834
||| |||||||||| ||||||||||||| | |||||||||| |||||||||||| |||
Sbjct 780 GATAACCCTTTGGACTCTTTTTCTTCCCC-C--ATACAACCCGGTTTTCAAGATGATCAT 836
Query 835 AATTCACTCCCTCTATTGGTTCCTGCTTCTCCTGAAGAATCTAAACAAACTCAAACGATG 894
||||||||||||||||||||||| || |||||||||||||||||| ||||||||| ||||
Sbjct 837 AATTCACTCCCTCTATTGGTTCCGGCGTCTCCTGAAGAATCTAAAGAAACTCAAAGGATG 896
Query 895 ATCAAGAACAAAGAGTACATTG-CGGATTACCATCATCATGATACTGCAAATCCTTCATC 953
|||||||||||||| ||| | || ||||||||||||||||| || |||| ||||||||
Sbjct 897 ATCAAGAACAAAGA---CATCGTCG-ATTACCATCATCATGATGCTTCAAACCCTTCATC 952
Query 954 ATCAAATTCGACGTTCACACAGGATCATCTTCAGCCATGGTTTGACACTATTGATGATGG 1013
|||||| || ||||| ||||| ||||||| ||| ||||||| ||||||||||||||||||
Sbjct 953 ATCAAACTCAACGTTTACACAAGATCATCATCACCCATGGTGTGACACTATTGATGATGG 1012
Query 1014 AGCAAGTGCTTCTTATTGGAAAGATATAATAGAGCAAACGTGTTCGGAACCATGGCCATT 1073
|||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1013 AGCAAGTGATTCTTTTTGGAAAGAGATAATAGAGCAAACTTGTTCGGAACCATGGCCATT 1072
Query 1074 TCCTGAATAGACAAGATT 1091
||||||||||||||||||
Sbjct 1073 TCCTGAATAGACAAGATT 1090
Score = 183 bits (99), Expect = 3e-45
Identities = 144/163 (88%), Gaps = 13/163 (8%)
Strand=Plus/Plus
Query 1092 TTATTTGTTGTCGATAGAGTTAAAAGCATATTTATTCTTCACTAATCCTTACAGT-TTTT 1150
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1129 TTATTTGTTGTCGATAGAGTTAAAAGCATATTTATTCTTCACTAATCCTTACCGTGTTTT 1188
Query 1151 GTTT-TAAGACCATGTGTG-GTAG-A--CATTGTTCTTGTACAAACTTAATTTACCTTAC 1205
||| |||||||||||||| || | | ||||| |||||||||||||| ||| || ||||
Sbjct 1189 TTTTGTAAGACCATGTGTGTGTGGTAAACATTGATCTTGTACAAACTTGATT-ACATTAC 1247
Query 1206 TGTATTAAATACAAATACTGTATTCGTGTTTGTAATTACTTTC 1248
|||||||| |||||||| | | |||||||||||||||||||
Sbjct 1248 TGTATTAA-TACAAATA-T-T---CGTGTTTGTAATTACTTTC 1284
> AT3G02940.1 | Symbols: MYB107, AtMYB107 | myb domain protein
107 | chr3:661873-664006 FORWARD LENGTH=1231
Length=1231
Score = 599 bits (324), Expect = 2e-170
Identities = 533/632 (84%), Gaps = 21/632 (3%)
Strand=Plus/Plus
Query 63 AATGGGGCGTTCACCATGTTGCGATGAGAATGG-TCTAAAGAAAGGGCCATGGACACAAG 121
||||||| | ||||| ||||||||||||| || | ||||||||||||||||||| | ||
Sbjct 89 AATGGGGAGATCACCGTGTTGCGATGAGAGCGGAT-TAAAGAAAGGGCCATGGACGCCAG 147
Query 122 AGGAGGATGAGAAACTGATTGATCACATTCA-AACACATGGCCATGGCAGCTGGAGAGCT 180
| || ||| |||||||||| |||||| | | || ||| |||||||| ||||||||||||
Sbjct 148 AAGAAGATCAGAAACTGATAAATCACA-TAAGAAAACACGGCCATGGAAGCTGGAGAGCT 206
Query 181 CTTCCGAAGCAAGCCGGTTTAAACCGATGCGGAAAGAGTTGTAGATTGAGATGGACTAAC 240
|| || |||||||||||||||||||| || || |||||||| |||||||||||||||||
Sbjct 207 CTACCCAAGCAAGCCGGTTTAAACCGGTGTGGGAAGAGTTGCAGATTGAGATGGACTAAT 266
Query 241 TACTTGAGACCTGACATCAAGAGAGGAAATTTCACTGAAGAGGAAGAACAAACAATTATC 300
||||||||||| || ||||| |||||||| ||||| | |||||||||||||| || ||
Sbjct 267 TACTTGAGACCAGATATCAAAAGAGGAAACTTCACAGCTGAGGAAGAACAAACTATCATT 326
Query 301 AACCTCCATTCCCTTCTTGGAAACAAGTGGTCGTCGATAGCCGGTAATCTTCCTGGAAGA 360
||||| ||||| |||||||| |||||||||||||| ||||| ||| |||| || ||||||
Sbjct 327 AACCTTCATTCTCTTCTTGGGAACAAGTGGTCGTCTATAGCTGGTCATCTCCCAGGAAGA 386
Query 361 ACGGACAATGAAATAAAAAACTATTGGAACACACAT-TTGAGAAAGAAACTTCTCCAAAT 419
||||| || |||||||| |||||||||||||| ||| || |||||||||||| | || ||
Sbjct 387 ACGGATAACGAAATAAAGAACTATTGGAACACGCATATT-AGAAAGAAACTTATTCAGAT 445
Query 420 GGGGATTGATCCGGTGACCCATAGGCCAAGAACCGACCATCTAAACGTTTTAGCTGCTCT 479
||| || |||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 446 GGGAATCGATCCGGTGACCCATAGGCCAAGAACCGACCATCTAAACGTTCTAGCCGCTCT 505
Query 480 CCCGCAGCTTA-TAGCCGCCGCAAATTTCAACAGCCTCTTGAATCTCAATCAAAACGTGC 538
|||||| || | |||| |||||||||||||||| |||||||||||| |||||||| | |
Sbjct 506 CCCGCAACT-ACTAGCTGCCGCAAATTTCAACAACCTCTTGAATCTAAATCAAAATATAC 564
Query 539 AAGTGGATGCAACAACTCTTGCTAAAGCTCAACTTTTACACACTATGATTCAAGTCCTTG 598
|| |||||||||||| | |||| ||||| ||||| ||||| | ||||||||||||||||
Sbjct 565 AATTGGATGCAACAAGTGTTGCGAAAGCCCAACTGTTACATAGTATGATTCAAGTCCTTA 624
Query 599 GCACCAATAACAACACCAATCCTTCTTTTT-C-TTCATCAACTATGCAAAACAGTAGCAA 656
||| ||| ||| ||| | |||| ||| | ||||||| | | ||| || || |
Sbjct 625 GCAACAA---CAATACCTCTTCTTCCTTTGACATTCATCA-C-A--CAAC-CAATA--A- 673
Query 657 TCTCTTTGGCCAATCTTCTTACTTAGAGAACC 688
|||||||||||||||||||| |||||||||||
Sbjct 674 TCTCTTTGGCCAATCTTCTTTCTTAGAGAACC 705
> AT1G34670.1 | Symbols: AtMYB93, MYB93 | myb domain protein 93
| chr1:12709128-12710423 FORWARD LENGTH=1098
Length=1098
Score = 241 bits (130), Expect = 2e-62
Identities = 321/410 (78%), Gaps = 25/410 (6%)
Strand=Plus/Plus
Query 64 ATGGGGCGTTCACCATGTTGCGATGAGAATGGTCTAAAGAAAGGGCCATGGACACAAGAG 123
|||||| | || || |||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 1 ATGGGGAGGTCGCCTTGTTGCGACGAGAATGGTCTAAAGAAAGGGCCATGGACTCCTGAA 60
Query 124 GAGGATGAGAAA-CTGATTGATCACATTCA-AACACATGGCCATGGCAGCTGGAGAGCTC 181
|| ||| | ||| || |||||| ||||||| || |||||| ||||| |||||||||||||
Sbjct 61 GAAGATCA-AAAGCTTATTGATTACATTCATAA-ACATGGTCATGGAAGCTGGAGAGCTC 118
Query 182 TTCCGAAGCAAGCCGGTTTAAACCGATGCGGAAAGAGTTGTAGATTGAGATGGACTAACT 241
| || |||| || | ||| || | || ||||||||||||||| |||| ||||| || |
Sbjct 119 TCCCCAAGCTCGCAGATTTGAATAGGTGTGGAAAGAGTTGTAGACTGAGGTGGACAAATT 178
Query 242 ACTTGAGACCTGACATCAAGAGAGGAAA-TTT-CA-CTGAAGAGGAAGAACAAACAATTA 298
| |||||||| |||||||| |||||||| ||| || | ||||| || | ||||||||
Sbjct 179 ATTTGAGACCAGACATCAAAAGAGGAAAGTTTTCAGCCGAAGAAGA-G--CAAACAATCC 235
Query 299 TCAACCTCCATTCCCTTCTTGGAAACAAGTGGTC-GTCGATAGC--CGGTAATCTTCCT- 354
|| | ||||| ||| |||| || || || ||||| | | || || || | | || |
Sbjct 236 TCCATCTCCACTCCATTCTCGGGAATAAATGGTCAG-CTATTGCGACGC-A-T-TTGCAA 291
Query 355 GGAAGAACGGACAATGAAATAAAAAACTATTGGAACACACATTTGA-GAAAGAAACTTC- 412
|| | || || ||||| |||||||||| ||||||||||||| | | ||| |||| ||
Sbjct 292 GGTCGTACAGATAATGAGATAAAAAACTTTTGGAACACACATCTAAAGAA-GAAA-TTGA 349
Query 413 TCCAAATGGGGATTGATCCGGTGACCCAT-AGGCCAAGAACCGACCATCT 461
|||| |||||||| ||||| ||||| ||| || ||||||||||||| |||
Sbjct 350 TCCAGATGGGGATCGATCCTGTGACTCATCAG-CCAAGAACCGACC-TCT 397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61345065990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5