BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488540
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16810.1 | Symbols: | Protein kinase superfamily protein | ... 2193 0.0
> AT5G16810.1 | Symbols: | Protein kinase superfamily protein
| chr5:5526742-5529930 REVERSE LENGTH=1427
Length=1427
Score = 2193 bits (1187), Expect = 0.0
Identities = 1327/1395 (95%), Gaps = 8/1395 (1%)
Strand=Plus/Plus
Query 1 AAGGAATTTGAAGTGAAACAAAACGAAATACAAACAAAAGCGATGAATCTGGTCGCTGTT 60
||| ||||||||||||| | |||||| |||||||||||||||||||||||||||| ||
Sbjct 13 AAGTAATTTGAAGTGAAGC--GACGAAACACAAACAAAAGCGATGAATCTGGTCGCTATT 70
Query 61 CATCGCGTTTCCTTGGAATGCATTTCGCGTTTCTCTTTGATCCATCGAGAATTAGGCGAG 120
|||||||||||||| |||||| |||||||||||||||||| ||| |||||| ||||||
Sbjct 71 CATCGCGTTTCCTTCGAATGCGTTTCGCGTTTCTCTTTGAAACATAGAGAATCAGGCGAT 130
Query 121 GGGTTATCCGGTC-GTCGGATTGTGAATTCGCGTGGACGGAATCGGCCGATTCGGCGGCT 179
|| || ||||| | |||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 131 GGATTCTCCGG-CTGTCGGATTGTAAATTCGCGTGGACGGAATCGGCCGATTCGGCGGTT 189
Query 180 GCATGCGGTGACGGCGGGTTTGATAACTAGCGCTGACTCCTTCGAGGTAGGGCGGCTTAT 239
|||||||||||| ||| |||||||||| || |||||||| ||||||||||||||||||||
Sbjct 190 GCATGCGGTGACAGCGAGTTTGATAACCAGTGCTGACTCGTTCGAGGTAGGGCGGCTTAT 249
Query 240 CGGAAGCTACGGATTCATGAATGTAACTAGTTATTCAGGGTTGCAGTCAGGATCTGACTT 299
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 250 CGGAAGCTACGGATTCATGAATGTAACTAGTTATACAGGGCTGCAGTCAGGATCTGACTT 309
Query 300 TGAATATACTTCTGATGATATTGGGCGATTAAAATCTCAAGATATTGGAGAAGGTGGCGT 359
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 310 TGAATATACGTCTGATGATATTGGGCGATTAAAATCTCAAGATATTGGAGAAGGTGCCGT 369
Query 360 TAAGATCAGACTATATGAAGGAAGAATATCTCAGGGTCCATTTCGAGGAACGCCTGTTGT 419
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 370 TAAGATCAGACTATATCAAGGACGAATATCTCAGGGTCCATTTCGAGGAACGCCTGTCGT 429
Query 420 CTTTAAGGTCTATCCAGGACAGCGTGCTGGTGGAGTTGAGGCTGACATGATGGCAGCAAA 479
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CTTTAAGGTCTACCCCGGACAGCGTGCTGGTGGAGTTGAGGCTGACATGATGGCAGCAAA 489
Query 480 CGAGCTTAATGCACACTCTTTTCTCCAGAGCAAAAGCCTGCCTGCTAATCTACTTATACT 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 490 CGAGCTTAATGCACACTCTTTTCTCCAGAGCAAAAGCCTGCCTGCTAATCTGCTTCTACT 549
Query 540 TGTTGGTGGCTTTGAGACACAACTTGGGGAACAGTGGCTGGCTTTTCGTGATGGTGGGAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TGTTGGTGGCTTTGAGACACAACTTGGGGAACAGTGGCTGGCTTTTCGTGATGGTGGGAA 609
Query 600 AGATAGTGCAGCTGACTACGCGCAAACTGCGAGTGAAAAAACATCCAGAGCTCGCTCCCA 659
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 610 AGATAGTGCAGCTGACTACGCGCAAACTGCGAGTGAAAAAACAACCAGAGCTCGCTCCCA 669
Query 660 AGGAGTATGGAATCCTTATGAAAAAGAGCAGATGATGAAAA-GAAGGAGAAACTTTGTCA 718
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
Sbjct 670 AGGAGTATGGAATCCTTATGAAAAAGAGCAGATGAT-AAAACGAAGGAGAAACTTTGTTA 728
Query 719 TTAAGATCCTACAGGGTGCAATGAAGGGTCTAGCCTTTATGCATGATAATGACAGGTTAC 778
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TTAAGATCCTTCAGGGTGCAATGAAGGGTCTAGCCTTTATGCATGATAATGACAGGTTAC 788
Query 779 ACCAAAGCCTCGGGCCATCCTCAATTGTTCTCAATACACCAGCGGAACGAGAAGCCATCT 838
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 ATCAAAGCCTCGGGCCATCCTCAATTGTTCTCAATACACCAGCGGAACGAGAAGCCATCT 848
Query 839 ATTTAATACCGCGGCTGCGAGATCTAGCCTTTTCTGTTGACATAAGGCCTTCATGCTTGG 898
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 ATTTAATACCGAGGCTGCGAGATCTAGCCTTTTCTGTTGACATAAGGCCTTCATGCTTGG 908
Query 899 AAGAAGGAGCCACTTCTGGTTCACTTTCAGAGCAACTTTGGCGAAGGGCAACTGCTGCTG 958
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 909 AAGAAGGAGCCACTTCTGGTTCACTGTCAGAGCAACTTTGGCGAAGGGCAAATGCTGCTG 968
Query 959 GTGCTTTCACAGTTTTTGAGAAAAGAGCTTTTGGGATTGCAGATGACATATATGAAGCTG 1018
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 969 GTGCTTACACAGTTTTTGAGAAAAGAGCTTTTGGGATTGCAGATGACATATATGAAGCCG 1028
Query 1019 GTCTTCTTTTTGCATACTTAGCCTTTGTTCCATTCTGTGAAGCAGGCGTAATGGATTCTC 1078
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1029 GTCTTCTTTTTGCATACTTAGCATTTGTTCCATTCTGTGAAGCAGGCGTAACGGATTCTC 1088
Query 1079 TTTCTCTTCAGAGGCTACTGGAAAACACTTTCCGGCTGGATATCGAGGCTGTAAGAGAGT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 TTTCTCTTCAGAGGCTACTGGAAAACACTTTCCGGCTGGATATCGAGGCTGTAAGAGAGT 1148
Query 1139 ACTGTTTGGCTGATGAACGCCTCGAAGAAGCTGTAAAGTTTCTGGATCTTGGTGATAGAG 1198
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1149 ACTGTTTAGCTGATGAACGCCTCGAAGAAGCGGTAAAGTTTCTGGATCTTGGTGATAGAG 1208
Query 1199 CTGGTTGGGAATTACTCCAGGCAATGTTGAACGCTGACCATAGGAAGCGGCCAATGGCGG 1258
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1209 CTGGTTGGGAATTGCTCCAGGCAATGTTGAACGCTGACTATAGGAAGCGGCCAATGGCGG 1268
Query 1259 AAGCTGTTCTTAGTCACCGATTTTTGAACGGCGTTGTTTAATTGAGAATAGATGAAGATT 1318
|||||||||||||||| ||||||||||| ||||| |||||| |||||| ||| |||||||
Sbjct 1269 AAGCTGTTCTTAGTCATCGATTTTTGAATGGCGTAGTTTAAATGAGAAGAGACGAAGATT 1328
Query 1319 ATGTAATTCCGTATTTA-CGGACAACTATTAATCCTTGATCCATATTCTGAATATATAAT 1377
||||| || |||| ||| | ||||||||||||||||||||||| ||||||| |||||||
Sbjct 1329 ATGTATTTACGTAATTATCT-ACAACTATTAATCCTTGATCCATGTTCTGAACATATAAT 1387
Query 1378 CATATCTCGTGGGTT 1392
||||| |||||||||
Sbjct 1388 CATATATCGTGGGTT 1402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68573944470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5