BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488541
Length=1786
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16820.1 | Symbols: HSF3, HSFA1B, ATHSFA1B, ATHSF3 | heat sh... 2468 0.0
AT3G02990.1 | Symbols: ATHSFA1E, HSFA1E | heat shock transcript... 656 0.0
AT5G03720.1 | Symbols: AT-HSFA3, HSFA3 | heat shock transcripti... 100 4e-20
> AT5G16820.1 | Symbols: HSF3, HSFA1B, ATHSFA1B, ATHSF3 | heat
shock factor 3 | chr5:5530273-5532792 FORWARD LENGTH=1833
Length=1833
Score = 2468 bits (1336), Expect = 0.0
Identities = 1622/1756 (92%), Gaps = 35/1756 (2%)
Strand=Plus/Plus
Query 57 TTTGAGCTCGCGAAGAACGGAAGAAATTTTCAGGATCAATCAACCGATCAAGCTTTGGTG 116
|||||||| | ||||||| ||||||| || ||||||||||||| ||||||| |||| |||
Sbjct 86 TTTGAGCTTGAGAAGAACAGAAGAAACTTCCAGGATCAATCAATCGATCAA-CTTTAGTG 144
Query 117 AACTAACTCTTGCTTTTTCATTCGTAGTTATGGAACCGGTTCCCGAATCCGTACCCTCGC 176
|||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||
Sbjct 145 AACTAACTCTTGATTTTTCATTCGAAGTTATGGAATCGGTTCCCGAATCCGTACCATCGC 204
Query 177 CGAACTCGACTACGTCATCTATACCACCGCCGGTGAACTCCGTGCCGCCTTTCTTGAGCA 236
||||||||| ||| | || ||||||||||||||||||||||| |||||||||||||| |
Sbjct 205 CGAACTCGAATACACCGTCAATACCACCGCCGGTGAACTCCGTACCGCCTTTCTTGAGTA 264
Query 237 AAACCTACGACATGGTTGATGATCCGTTGACCAATGAGGTCGTGTCTTGGAGCAGCGGGA 296
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 265 AAACCTACGACATGGTTGATGATCCGTTGACCAATGAGGTCGTTTCGTGGAGCAGCGGGA 324
Query 297 ACAACAGCTTCGTCGTCTGGAGTGTCCCC-GAGTTCTCGAAGGTGCTCTTACCCAAGTAT 355
|||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 325 ACAACAGCTTCGTCGTCTGGAGTG-CCCCGGAGTTCTCGAAGGTGCTCTTGCCCAAGTAT 383
Query 356 TTCAAGCACAACAATTTCTCCAGCTTCGTCAGACAGTTAAATACTTATGGTTTCAGAAAA 415
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 TTCAAGCACAACAACTTCTCCAGCTTCGTCAGACAGTTAAATACTTATGGTTTCAGAAAA 443
Query 416 GTTGATCCAGATCGATGGGAATTTGCAAATGAGGGATTTCTTAGAGGCCAAAAACAACTA 475
|||||||| || |||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 444 GTTGATCCTGACCGATGGGAATTTGCAAATGAAGGATTTCTTAGAGGCCGAAAACAACTA 503
Query 476 CTCAAGAGTATTGTTAGGAGAAAACCTTCGCATGTGCAGCAGAATCAGCAACAAACTCAA 535
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 CTGAAGAGTATTGTCAGGAGAAAACCTTCGCATGTGCAGCAGAATCAGCAACAAACTCAA 563
Query 536 GTTCAGAGCTCATCTGTTGGTGCTTGTGTCGAGGTGGGGAAGTTTGGAATAGAAGAAGAA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 GTTCAGAGCTCATCTGTTGGTGCTTGTGTCGAGGTGGGGAAGTTTGGAATAGAAGAAGAA 623
Query 596 GTGGATAGACTTAAGCGGGATAAGAATGTTCTTATGCAAGAACTCGTCAGGTTAAGGCAG 655
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 GTGGAAAGACTTAAGCGGGATAAGAATGTTCTTATGCAAGAACTCGTCAGGTTAAGGCAG 683
Query 656 CAACAGCAAGCTACCGAAAACCAACTGCAGAATGTGGGACAGAAAGTTCAGGTGATGGAG 715
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 CAACAGCAAGCTACTGAAAACCAACTGCAGAATGTGGGACAGAAAGTTCAGGTGATGGAG 743
Query 716 CAGAGGCAACAACAAATGATGTCGTTTTTAGCAAAGGCTGTTCAAAGTCCAGGTTTCTTA 775
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 CAAAGGCAACAACAAATGATGTCGTTTTTAGCAAAGGCTGTTCAAAGTCCAGGTTTCTTA 803
Query 776 AACCAGTTAGTACAACAGAATAAT---GATGGCAACAGACAAATTCCAGGAAGCAACAAA 832
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 804 AACCAGTTAGTACAACAGAATAATAATGATGGCAACAGACAAATTCCAGGAAGCAACAAA 863
Query 833 AAGAGGAGACTTCCTGTTGATGAACAGGAGAA-CTGTGGGGACCATGTGGCTAATGGTCT 891
||||||||||||||||| ||||| |||||||| | |||| ||| ||||||||||||||||
Sbjct 864 AAGAGGAGACTTCCTGTAGATGAGCAGGAGAATC-GTGGTGACAATGTGGCTAATGGTCT 922
Query 892 TAACCGTCAGATTGTTAGATATCAGCCGTCGATAAACGAAGCAGCCCAAACTATGCTTAG 951
|||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| |
Sbjct 923 TAACCGCCAGATTGTTAGATATCAGCCGTCGATAAACGAAGCAGCACAAAATATGCTTCG 982
Query 952 ACAGTTCTTAAATACTAGTACCTCACCTCGGTATGAATCAGTTTCAAACAATCCTGACAG 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 ACAGTTCTTAAATACTAGTACCTCACCTCGGTATGAATCAGTTTCAAACAATCCTGACAG 1042
Query 1012 TTTCCTATTGGGTGATGTTCCCAGTTCTAACTCTGTAGACAATGGGAACCTTTCAAATAG 1071
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 1043 TTTCCTATTGGGTGATGTTCCCAGTTCTACCTCTGTAGACAATGGGAACCCTTCAAGTAG 1102
Query 1072 AGTTTCTGGAGTAACACTGGCCGAGGTTTCACCCAACGCAGCTCACTCAGCAACGAATCA 1131
|||||||||||||||| |||||||| ||||||||||| ||| ||| ||||||||||||||
Sbjct 1103 AGTTTCTGGAGTAACATTGGCCGAGTTTTCACCCAACACAGTTCAGTCAGCAACGAATCA 1162
Query 1132 AGTACCCGAAGCAGGTTTGGCTCAGCATCCTCAAGCTAGTCTGGTTCATCCAAATTTAGG 1191
||||||||||||| |||||||||| |||||||||||| |||||||||| |||||| ||||
Sbjct 1163 AGTACCCGAAGCAAGTTTGGCTCATCATCCTCAAGCTGGTCTGGTTCAGCCAAATATAGG 1222
Query 1192 TCCAAGTCCGTCTCAAGGAGTAGCACCTGCAGCCTCTTGGAGCCCTGAATCTGATTTAGT 1251
|| ||||||| ||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1223 TCAAAGTCCGGCTCAAGGAGCAGCACCTGCAGACTCTTGGAGCCCTGAATTTGATTTAGT 1282
Query 1252 TGGATGTGAGACGGGCAATGGAGAGTGTTTCGATCCAATAATGGCTGTTTTAGATG---C 1308
|||||| ||||| | | |||||||||||| ||||||||||||||||||||||||| |
Sbjct 1283 TGGATGCGAGACAGATAGTGGAGAGTGTTTTGATCCAATAATGGCTGTTTTAGATGAGTC 1342
Query 1309 A-A------T----TT-CTCCTGAAGGCGAGGGCGAGATGGATGAGTTACTGGATGGAGT 1356
| | | || |||||||||| |||||| ||||| ||||||||||||| |||||
Sbjct 1343 AGAAGGCGATGCAATTTCTCCTGAAGGTGAGGGCAAGATGAATGAGTTACTGGAGGGAGT 1402
Query 1357 CCCTAAGCTGCCCGGAGTCCAAGATCCATTCTGGGTACAGTTCTTTTCTGATGAAAGCCC 1416
|||||||||||||||| |||||||||||||||||| |||||||||||||| |||| |||
Sbjct 1403 CCCTAAGCTGCCCGGAATCCAAGATCCATTCTGGGAACAGTTCTTTTCTGTTGAACTCCC 1462
Query 1417 AGCGATGGCAGATACAGACGAGATTCTATCAGGATCAGTGGAGAATAATGACATGGTAAT 1476
|||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| |
Sbjct 1463 AGCGATTGCAGATACAGACGATATTCTATCAGGATCAGTGGAGAATAATGACTTGGTATT 1522
Query 1477 GGAACAAGAACCAAACGAGTGGACCCGGAATCAACAACAAATGAATTATCTTTCTGAACA 1536
||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |||||||
Sbjct 1523 GGAACAAGAACCAAACGAGTGGACCCGTAATGAACAACAAATGAAGTATCTTACTGAACA 1582
Query 1537 AATGGGACTTCTTTCCTCAGAAGCACAGAGGAAATAAAGATTTTCAGGGGAAGTTGTGAA 1596
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1583 AATGGGACTGCTTTCCTCAGAAGCACAGAGGAAATAAAGATTTTCAGGGGAGGTTGCAAA 1642
Query 1597 AGGAGATATGAAGGAAGGAGGAATATATG-G-TG-T-TG-ATACCCTTCACATTTTTACT 1651
|||||||||||||||| ||||||||||| | || | || |||||||| |||||||||||
Sbjct 1643 AGGAGATATGAAGGAACGAGGAATATATCAGATGGTGTGTATACCCTTTACATTTTTACT 1702
Query 1652 TaaaaaaaaaaaaaaaaGAGATAGAAGAAACGTAAAAGATTTACTACCATGCTTGTGAAT 1711
|||| ||||||||| ||||| |||||||| |||||||||||| |||| ||||||||||
Sbjct 1703 TAAATGAAAAAAAAACAGAGA--GAAGAAACATAAAAGATTTACCACCAAGCTTGTGAAT 1760
Query 1712 AAA-AGTAGAGATCGTTTTTTGTGTTGTTTCTTTCTATTATACTTTTGTGTGAAAACGTT 1770
| ||||||||||| |||||||||||||| | ||||||||||||||||||||||||
Sbjct 1761 AGTTAGTAGAGATCGGTTTTTGTGTTGTTTAT----ATTATACTTTTGTGTGAAAACGTT 1816
Query 1771 CGTCGTGTTCAATTAT 1786
| || |||||||||||
Sbjct 1817 CATCTTGTTCAATTAT 1832
> AT3G02990.1 | Symbols: ATHSFA1E, HSFA1E | heat shock transcription
factor A1E | chr3:673472-676403 FORWARD LENGTH=1864
Length=1864
Score = 656 bits (355), Expect = 0.0
Identities = 737/917 (80%), Gaps = 43/917 (5%)
Strand=Plus/Plus
Query 210 TGAACTCCGTGCCGCC-TTTCTTGAGCAAAACCTACGACATGGTTGATGATCCGTTGACC 268
||| |||| | ||||| |||| |||||||||| ||||| |||||||| ||||| |||||
Sbjct 195 TGAGCTCCATTCCGCCTTTTC-TGAGCAAAACGTACGATATGGTTGACGATCCATTGACG 253
Query 269 AATGAGGTCGTGTCTTGGAGCAGCGGGAACAACAGCTTCGTCGTCTGGAGTGTCCCCGAG 328
| || || ||||||||||||||||| |||||||||||||| || |||| || || |||
Sbjct 254 GACGACGTGGTGTCTTGGAGCAGCGGAAACAACAGCTTCGTGGTTTGGAACGTGCCTGAG 313
Query 329 TTC-TCGAA-GGTGCTCTTACCCAAGTATTTCAAGCACAACAATTTCTCCAGCTTCGTCA 386
||| | || || || |||| |||||||||||||||||||||||||||||||||||||
Sbjct 314 TTCGCCAAACAGT-TTC-TACCAAAGTATTTCAAGCACAACAATTTCTCCAGCTTCGTCA 371
Query 387 GACAGTTAAATACTTATGGTTTCAGAAAAGTTGATCCAGATCGATGGGAATTTGCAAATG 446
||||| | |||||||||||||| ||||||||||||||||| || ||||| |||||||| |
Sbjct 372 GACAGCTCAATACTTATGGTTTTAGAAAAGTTGATCCAGACCGCTGGGAGTTTGCAAACG 431
Query 447 AGGGATTTCTTA-GAGGCCAAAAACAACTACTCAAGAGTATTGTTAGGAGAAAACCTTCG 505
|||| ||| ||| |||||||||| ||| |||| ||||||||||| || |||||||| |
Sbjct 432 AGGGCTTT-TTAAGAGGCCAAAAGCAAATACTAAAGAGTATTGTCCGGCGAAAACCTGCA 490
Query 506 CATGTGCAGCAGAATC-AGCAACAAACTCAAGTTCAG-AGCTCATCTGTTGGTGCTTGTG 563
|| ||||||| || | |||||| ||||||||||| | ||||||||| ||||| || |
Sbjct 491 CAAGTGCAGCC---TCCA-CAACAACCTCAAGTTCAGCA-CTCATCTGTGGGTGCGTGCG 545
Query 564 TCGAGGTGGGGAAGTTTGGAATAGAAGAAGAAGTGGATAGACTTAAGCGGGATAAGAATG 623
| || ||||| || |||||| | ||||| |||||||| |||||| |||| |||||||| |
Sbjct 546 TTGAAGTGGGCAAATTTGGACTCGAAGAGGAAGTGGAAAGACTTCAGCGCGATAAGAACG 605
Query 624 TTCTTATGCAAGAACTCGTCAGGTTAAGGCAGCAACAGCAAGCTACCGAAAACCAACTGC 683
| |||||||| ||||| || ||||| ||||||||||| |||| ||||||| | || ||||
Sbjct 606 TCCTTATGCAGGAACTTGTAAGGTTGAGGCAGCAACAACAAGTTACCGAACATCATCTGC 665
Query 684 AGAATGTGGGACAGAAAGTTCAGGTGATGGAGCAGAGGCAACAACAAATGATGTCGTTTT 743
|||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||| |||
Sbjct 666 AGAATGTGGGGCAGAAAGTTCATGTGATGGAGCAGAGGCAGCAACAGATGATGTCCTTTC 725
Query 744 TAGCAAAGGCTGTTCAAAGTCCAGGTTTCTTAAACCAGTTAG-TACAACAGAATAATGAT 802
||||||||||||| ||||||||||||||||||||||| || | || |||| ||||||
Sbjct 726 TAGCAAAGGCTGTCCAAAGTCCAGGTTTCTTAAACCAATTTTCT-CAGCAGAGTAATGAA 784
Query 803 GGCAA-C-AGACAAATTCCAGGAAGCAACAAAAAGAGGAGACTTCCTGTTGATGAACAGG 860
| ||| | | ||| ||| | | |||||||||||||||||| || |||||||| || |||
Sbjct 785 G-CAAACCA-ACACATTTCTGAAAGCAACAAAAAGAGGAGGCTACCTGTTGAGGACCAG- 841
Query 861 A-GAACTGTGGG-GACCATGTGGCTAATGGTCTTAACCGTCAGATTGTTAGATATCAGCC 918
| ||| | ||| | | ||| || ||||||||||| ||| |||||||| ||||||||| |
Sbjct 842 ATGAATTCTGGCAGTC-ATGGGGTTAATGGTCTTAGCCGCCAGATTGTGAGATATCAGTC 900
Query 919 GTCGATAAACGAAGCAGCCCAA-ACTATGCTT-AGACAGTT-CTTAA-ATACTAGTACCT 974
||||| ||||| ||| | || ||||||||| | |||| | | | || |||| |
Sbjct 901 ATCGATGAACGATGCAACA-AACACTATGCTTCA-ACAGATACAGCAGATG--AGTAA-T 955
Query 975 -CACCTCGGTATGAATCAGTTTCAAACAATCCTGACAG-TTTCCTATTGGGTGATGTTCC 1032
||||| | ||||||| | |||| |||| || || |||| | ||||| ||||||||
Sbjct 956 GCACCTAGCCATGAATCTCTCTCAAGCAATAATGGTAGCTTTCTT-TTGGGCGATGTTCC 1014
Query 1033 CAGTTCTAAC-TCTGTAGACAATGGGAAC-CTTTCAAATAGAGTTTC-TGGAGTAACACT 1089
| ||||||| | | ||||||||||| | | | ||||| || | | || ||| ||| |
Sbjct 1015 AAATTCTAACATTTC-AGACAATGGGAGCTCCT-CAAATGGA-TCACCTGAAGTTACATT 1071
Query 1090 GGCCGAGGTTTCACCCA 1106
||| || |||||| |||
Sbjct 1072 GGCAGATGTTTCATCCA 1088
> AT5G03720.1 | Symbols: AT-HSFA3, HSFA3 | heat shock transcription
factor A3 | chr5:971786-973683 REVERSE LENGTH=1366
Length=1366
Score = 100 bits (54), Expect = 4e-20
Identities = 115/142 (81%), Gaps = 13/142 (9%)
Strand=Plus/Plus
Query 348 CCAA-GTATTTCAAGCACAACAATTTCTCCAGCTTCGTCAGACAG-TTAAATACTTATGG 405
|||| | ||||||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 286 CCAAGGAATTTCAAACACAACAATTTCTCCAGCTTCGTCAGACAGCTTAAC-ACTTATGG 344
Query 406 -TTTCAGAAA-AGTTGATCCAGATCGA-TGGGAATTTGCAAATGAGGGATTTC-TTAGAG 461
|||| |||| | ||||| | || | | |||||||| || || |||| |||| ||||||
Sbjct 345 ATTTC-GAAAGA-TTGATACTGA-CAAGTGGGAATTCGCTAACGAGGC-TTTCCTTAGAG 400
Query 462 GCCAAAAA-CAACTACTCAAGA 482
|| || || || || || ||||
Sbjct 401 GC-AAGAAGCATCTTCTGAAGA 421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88352959200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5