BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488543
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16830.1 | Symbols: SYP21, ATSYP21, PEP12, ATPEP12, PEP12P |... 1546 0.0
> AT5G16830.1 | Symbols: SYP21, ATSYP21, PEP12, ATPEP12, PEP12P
| syntaxin of plants 21 | chr5:5532846-5535252 REVERSE LENGTH=1170
Length=1170
Score = 1546 bits (837), Expect = 0.0
Identities = 1031/1122 (92%), Gaps = 24/1122 (2%)
Strand=Plus/Plus
Query 1 AAAACTTATAATTTACCTAACTCATTTCCATCATCTTCGTCTTTGTTTGTTCCCCTgaga 60
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AAAACTTATAATTCACCTAACTCATTTCCATCATCTTCGTCTTCGTTTGTTCCCCTGAGA 60
Query 61 gagaaagatcagaagattttcgagagattggagagaagagaCGATGAGTTTCCAAGATCT 120
|| |||| || ||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TAG--AGATAAG-AGAATTTCGAGAGATTCGAGAGAAGAGACGATGAGTTTCCAAGATCT 117
Query 121 CGAAGCTGGTACTCGATTTCAGACTCCGAATCGTTTTGCCGGCGGGAGACAACAGAGACC 180
||||||||||||||||| || | | |||||||||||| |||| |||||||||||||||||
Sbjct 118 CGAAGCTGGTACTCGATCTCCGGCGCCGAATCGTTTTACCGGTGGGAGACAACAGAGACC 177
Query 181 GTCGTCTCGTGGGGATCCATCTCAGGAGGTCGCCGCCGGGATTTTCAGGATCAGCACAGC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 178 TTCGTCTCGTGGGGATCCATCTCAGGAGGTCGCCGCCGGGATTTTCAGGATCAGCACGGC 237
Query 241 TGTCAATTCCTTCTTCCGCCTCGTTAATTCGATCGGAACGCCTAAAGATACTCTTGAATT 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 238 TGTCAATTCCTTCTTCCGCCTCGTTAATTCGATCGGAACACCTAAAGATACTCTTGAATT 297
Query 301 GCGAGAGAAGCTGCAAAAGACAAGGTTACAAATATCAGAATTGGTGAAAAATACTTCAGC 360
||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 298 ACGAGATAAGCTGCAAAAGACAAGGTTACAGATATCCGAATTGGTGAAGAATACTTCAGC 357
Query 361 CAAACTTAAGGAAGCTAGCGAAGCCGATCTTCATGGAGAAGCTAGTCCAATTAAGAAGAT 420
|||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct 358 TAAACTTAAGGAAGCTAGCGAAGCCGACCTTCATGGATCAGCTAGTCAAATTAAGAAGAT 417
Query 421 TGCGGATGCTAAACTGGCAAAAGATTTCCAATCAGTACTCAAAGAGTTCCAGAAAGCTCA 480
|| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 418 AGCTGATGCTAAACTGGCAAAAGATTTCCAATCAGTTCTCAAAGAGTTTCAGAAAGCTCA 477
Query 481 GAGACTTGCAGCTGAAAGAGAAATAACATATACTCCTGTGGTCACAAAAGGAATACCTAC 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 478 GAGACTTGCAGCTGAAAGAGAAATAACATATACTCCTGTGGTCACAAAAGAAATACCTAC 537
Query 541 CAGTTATAATGCACCGGAACTGGATACTGATGAATCTTTAAGGACCTCCCAGGAGCAAAC 600
||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||| |
Sbjct 538 CAGTTATAATGCACCTGAACTGGATAC---TGAATCTTTAAGGATCTCCCAGCAGCAAGC 594
Query 601 TCTTCTTCTACAATCAAGAAGGCAAGAAGTGGTGTTTTTAGATAACGAGATAACATTCAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TCTTCTTCTACAATCAAGAAGGCAAGAAGTGGTGTTTTTAGATAACGAGATAACATTCAA 654
Query 661 TGAAGCAATTATCGAGGAAAGAGAGCAAGGAATTAGAGAAGTTCAAGAACAGATTAGTGG 720
|||||||||||| ||||||||||||||||| ||| ||||| || |||| |||||| |||
Sbjct 655 TGAAGCAATTATTGAGGAAAGAGAGCAAGGGATTCGAGAAATTGAAGACCAGATTCGTG- 713
Query 721 A-GTGAATGAAATGTTCAAAGATCTAGCTGGTCTAGTGAACCATCAAGGAATTATTGTCG 779
| ||||||| |||||||||||||||||| | | |||||||||||||||| ||||||||
Sbjct 714 ATGTGAATGGCATGTTCAAAGATCTAGCTCTTATGGTGAACCATCAAGGAAATATTGTCG 773
Query 780 ATGACATCAACTATAACATTGATAACGCACATGCTGCAACTACAAAAGCCACTGCTCAAC 839
||||||||| || |||| |||| ||| ||||||||||||||||| ||||||||| |||||
Sbjct 774 ATGACATCAGCTCTAACCTTGACAACTCACATGCTGCAACTACACAAGCCACTGTTCAAC 833
Query 840 TCAGAAAAGCAGCTAAAACGCAAAGATCAAACTCCTCTTTGACATGTCTACTTATTCTCA 899
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 834 TCAGAAAAGCAGCTAAAACTCAAAGATCAAACTCCTCTTTGACATGCCTACTTATTCTCA 893
Query 900 TTTTTGGGATTGTTCTGCTCATTGTCATCATCGTTGTCTTGGTCTAAAGCATCAAGCATC 959
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct 894 TTTTTGGGATTGTTCTACTCATTGTCATCATCGTTGTCTTGGTCTAA-GCATCAAACAT- 951
Query 960 A-AACTCCAAGCTT-AATCTTCAAGCAGCAAGCGAAGGACAAATCTATG-AAACTATACA 1016
| |||||||||||| |||||||||||| |||||||| |||||| ||||||||||
Sbjct 952 ATAACTCCAAGCTTCAATCTTCAAGCATCAAGCGAA-------TCTATGGAAACTATACA 1004
Query 1017 AAGAGCAATTAAAGATAAATATCTATTGTACAGATTCTTTATATATACTCCATCTTCCCC 1076
|||| | |||||||||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct 1005 AAGACCCATTAAAGATATATATCTAATGTACAGATTCTTTATA----CTCCATCTTCCCC 1060
Query 1077 ATTCAATCGAATTGATCTTAACTACTCATCGTGTGAATGTTT 1118
|||||| | |||||||||||||| ||||||||||||||||||
Sbjct 1061 ATTCAACCAAATTGATCTTAACTTCTCATCGTGTGAATGTTT 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54818995140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5