BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488545
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16840.2 | Symbols: BPA1 | binding partner of acd11 1 | chr5... 1858 0.0
> AT5G16840.2 | Symbols: BPA1 | binding partner of acd11 1 | chr5:5535869-5538250
FORWARD LENGTH=1180
Length=1180
Score = 1858 bits (1006), Expect = 0.0
Identities = 1102/1148 (96%), Gaps = 8/1148 (1%)
Strand=Plus/Plus
Query 1 ACACGTTGAGTGCGCGGTGTCATATAAAGCAAAATACACTCTTCCCTCTCTCTCTA--TA 58
|||||||||||| | |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1 ACACGTTGAGTGTGAGGTGTCATATAAAGCAAAATACACTCTTCCCTCTCTATCTATCTA 60
Query 59 CGCATCATCAATCTCGAAGCAAGTTTCGGTTTTTAGGCCGATCTCTGAATCTGCGTGACA 118
||||||||| ||||||||| | ||||||||||| ||||| |||||||||||||||||||
Sbjct 61 CGCATCATCGATCTCGAAGTACGTTTCGGTTTTCAGGCCAATCTCTGAATCTGCGTGAC- 119
Query 119 AAAAAGCAAGAAATTACATATCTCTCTCTCT--GCGACTTCGAAGATCAAAATCCATGGC 176
|||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 120 -AAAAGCAACAAATTACATATCTCTCTCTCTGCGCGACTTCGAAGATCAACATCCATGGC 178
Query 177 GTCACAGATAAGGTCAGTAAAAGTTGGCAATCTCTCTTCAGGAGCAACTGAGCATGATAT 236
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GTCACAGGTAAGGTCAGTAAAAGTTGGCAATCTCTCTTCAGGAGCAACTGAGCATGATAT 238
Query 237 AAAAGAGTTTTTCTCTTTCTCTGGTGAAGTTGAAAGCATTGACATCCAAAGCAGTAACGA 296
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 239 TAAAGAGTTTTTCTCTTTCTCTGGTGAAGTTGAAAGCATCGATATCCAAAGCAGTAACGA 298
Query 297 GCATAGTGCTTATGTCACATTTAAAGAAACTCAAGGTGCAGAGACTGCTGTGCTCTTATC 356
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 299 GCATAGTGCTTATGTCACATTTAAAGAAACTCAAGGAGCAGAGACTGCTGTGCTCTTATC 358
Query 357 TGGAGCAAGTATTGCCGATCAATCAGTCATCATTGAGATGGCTCCCAACTACAGTCCACC 416
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 TGGAGCGAGTATTGCCGATCAATCAGTCATCATTGAGTTGGCTCCCAACTACAGTCCACC 418
Query 417 AGCAGCCCCTCATGCTGAAACACAGAGCAGCGGTGCAGAATCTGTTGTCCAGAAGGCAGA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGCAGCCCCTCATGCTGAAACACAGAGCAGCGGTGCAGAATCTGTTGTCCAGAAGGCAGA 478
Query 477 AGATGTTGTGAGCAGCATGTTAGCAAAGGGTTTCATTCTTGGGAAAGATGCGGTCGGCAA 536
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 AGATGTTGTGAGCAGCATGTTAGCAAAGGGTTTCATTCTTGGGAAAGATGCTGTCGGCAA 538
Query 537 AGCAAAAGCTTTTGATGAGAAACATGGTTTCACTTCAACTGCAACCGCAGGAGTTGCTTC 596
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 539 AGCAAAAGCTTTTGATGAGAAACATGGTTTCACCTCAACCGCCACCGCAGGAGTTGCTTC 598
Query 597 ACTAGACCAAAAAATCGGTCTAAGCCAGAAACTTACAGCTGGAACAAGCTTGGTCAACGA 656
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 599 ACTAGACCAAAAAATCGGTCTTAGCCAGAAACTTACAGCTGGAACAAGCTTGGTGAACGA 658
Query 657 AAAAATCAAGGCGGTGGACCAAAACTTTCAGGTAACAGAGAGGACCAAGTCTGTGTATGC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AAAAATCAAGGCGGTGGACCAAAACTTTCAGGTAACAGAGAGGACCAAGTCTGTGTATGC 718
Query 717 AGCTGCGGAACAGACTGTGAGCAGTGCAGGAAGCGCTGTGATGAAGAACCGTTACGTGTT 776
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGCTGCGGAGCAGACTGTGAGCAGTGCAGGAAGCGCTGTGATGAAGAACCGTTACGTGTT 778
Query 777 AACTGGTGTGAGTTGGGCCGCAGGAGCATTCAACAGAGTGGCTCAAGCAGCTGGAGAGGT 836
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 779 AACTGGTGTGAGCTGGGCCGCAGGAGCATTCAATAGAGTGGCTCAAGCAGCTGGAGAGGT 838
Query 837 TGGACAGAAAACAAAAGAGAAGGTTGAAGCTGAGCAACCGCCACAACCAGCACAGTCGCA 896
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 839 TGGACAGAAAACAAAAGAGAAGGTTGAAGCTGAGCAACCATCGCAACCAGCACAGTCGCA 898
Query 897 GCAGCAACTGCCAGAAGGGTATTCTCCAATTCATTCATCCGAATACTCGAAGAACTAATA 956
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 899 GCAGCAACTGCCAGAAGGGTATTCTCCGATTCATTCGTCCGAATACTCGAAGAACTAATA 958
Query 957 TCATCAAGTTAAAACAGTTTCGTTTGTTTCTCCTTGTTGGTTTCTTTGACATGGAAGTTG 1016
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCATCAAGTTAAA-CAGTTTCCTTTGTTTCTCCTTGTTGGTTTCTTTGACATGGAAGTTG 1017
Query 1017 GAAATTTCGTTTGGTCTTTGGGATGTAACATATAAGCTATGCCTGGATTTTCCCTACTAC 1076
||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1018 GAAATCTGGTTTGGTCTTTGGGATGTACCATATAAGCTATGCCTGGATTTTCCCTACCAC 1077
Query 1077 TATTAGACTATAGTTTGGGTTTTT-CCAATATATATATTTAATAAGTTGACATTGAAATC 1135
|||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 1078 TATTAGACTATAGTTTGGGTTTTTTCCAATATACATATTTAATAAGTTGACATTTAAATC 1137
Query 1136 TTTCTTTA 1143
||||||||
Sbjct 1138 TTTCTTTA 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5