BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488549 Length=732 Score E Sequences producing significant alignments: (Bits) Value AT5G16870.1 | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) fam... 1144 0.0 AT3G03010.1 | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) fam... 424 8e-118 > AT5G16870.1 | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) family protein | chr5:5546811-5548736 REVERSE LENGTH=729 Length=729 Score = 1144 bits (619), Expect = 0.0 Identities = 698/735 (95%), Gaps = 9/735 (1%) Strand=Plus/Plus Query 1 ATCATCAGAGCCGTTTCTCTCTCTCTGGAACTCGATTTAAGTATTTGAGTCTTGCCAAAT 60 |||||| |||||||||||||||||| ||||||||||||||||||||| ||||||| ||| Sbjct 1 ATCATCGGAGCCGTTTCTCTCTCTC--GAACTCGATTTAAGTATTTGAATCTTGCC-AAT 57 Query 61 GGATTTGACGTGGTTAAGTGCCCTAATTGTTGGAGCTGCACTTGGATTCTGCATTGGCAC 120 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 58 GGATTTGACGTGGTTAAGTGCCCTAATTGTTGGAGCTGCACTTGGATACTGCATTGGCAC 117 Query 121 TCGCCGTTCCAAACCTGTTGTTGCTGCTGTTGATGGGGATACCAAAAAC-CAATCCTCCA 179 |||||||||||||||||||||||||||||||||| ||||| | ||||| |||||||||| Sbjct 118 TCGCCGTTCCAAACCTGTTGTTGCTGCTGTTGATAAGGATATC-AAAACTCAATCCTCCA 176 Query 180 AGGGTCCTCTCGAAATCGAGAAACTCGCTGATATTCTCGATGATTTCAAGATGGTTTTGG 239 | |||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 AAAGTCCACTCGAGATTGAGAAACTCGCTGATATTCTCGATGATTTCAAGATGGTTTTGG 236 Query 240 TTGTGAGGAATGATCTTAAAATGGGTAAAGGAAAGATTGCAGCTCAATGCAGTCATGCAA 299 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 TGGTGAGAAATGATCTTAAAATGGGTAAAGGAAAGATTGCAGCTCAATGCAGTCATGCAA 296 Query 300 CTTTAGGTTTATACAAAAAGCTTGTTCGTCGAGCACCAAAAGCATTGGACTGCTGGGAGG 359 ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 297 CTTTAGGATTATACAAGAAGCTTGTTCGTCGAGCGCCAAAAGCATTGGACTGCTGGGAGG 356 Query 360 AATGTGCACAGCCAAAAGTTGTTGTCAAAATCGAGGACGAGGACGAGATGCTAGAATTGC 419 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 357 AATGTGCACAGCCAAAAGTTGTTGTGAAAATCGAGGACGAGGACGAGATGCTAGAATTGC 416 Query 420 AAGAAAGAGCTAAATCCCTTAAACTGCCTACCCATATCACCATTGATGCTGGAAGAACCC 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 417 AAGAAAGAGCTAAATCCCTTAAACTGCCTACCCATATCACCATTGATGCTGGAAGAACAC 476 Query 480 AGATTGCCCCAAATTCAAGGACGGTTATGGCTATTCTTGGACCAGTCGAAGTTGTTGATG 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 AGATTGCCCCAAATTCAAGGACGGTTATGGCTATTCTTGGACCAGTCGAAGTTGTTGATG 536 Query 540 AAGTAACAGGTGGACTAAAGCTTCTTTAGAAGCTTCGTATTTCGATATGACATATCTTCA 599 ||||||||||||||||||||||||||||| || |||| ||||||||||||||| |||||| Sbjct 537 AAGTAACAGGTGGACTAAAGCTTCTTTAGCAGATTCGAATTTCGATATGACATTTCTTCA 596 Query 600 ACCTGATCTCTCAGATAGACCAAGCAGAAGGGAGAGGCATGAACTCCACCTTTTCTGGTT 659 |||||||||||||||| |||||||||||| |||||| ||||||||||||||| |||| || Sbjct 597 ACCTGATCTCTCAGATGGACCAAGCAGAAAGGAGAGACATGAACTCCACCTTCTCTG-TT 655 Query 660 -GCCC-AGGGTTACCTGTGAGAAATCTGTAGTTGTTACGTTTACTCGTTCCTGATGATGA 717 |||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 656 CGCCCGAGG-TTACCTGTGAGAAATCTGTAGTTGTTACGTATACTCGTTCCTGATGATGA 714 Query 718 CGAAATATCCATTTT 732 |||||||| |||||| Sbjct 715 CGAAATATTCATTTT 729 > AT3G03010.1 | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) family protein | chr3:678688-680605 REVERSE LENGTH=950 Length=950 Score = 424 bits (229), Expect = 8e-118 Identities = 346/402 (86%), Gaps = 10/402 (2%) Strand=Plus/Plus Query 165 AAAACCAATCCTCCAAGGGTCCTCTCGAAATCGAGAAACTCGCTGATATTCTCGATGATT 224 |||||||| ||||||| || ||||| || ||||||||||||||| ||| | | ||| Sbjct 255 AAAACCAA--GTCCAAGGAACCCCTCGAGATAGAGAAACTCGCTGATTTTCGCAAAAATT 312 Query 225 TCAAGATGGTTTTGGTTGTGAGGAATGATCTTAAAATGGGTAAAGGAAAGATTGCAGCTC 284 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 313 TCAAAATGGTTTTGGTTGTGAGGAATGATCTTAAAATGGGTAAAGGGAAGATTGCAGCTC 372 Query 285 AATGCAGTCATGCAACTTTAGGTTTATACAA-AAAGCTTGTTCGTCGAGCACCAAAAGCA 343 ||||||||||||||||||||||||||||||| ||| || ||| || || |||||||| Sbjct 373 AATGCAGTCATGCAACTTTAGGTTTATACAAGAAA-CTCCTTCAACGGGCGCCAAAAGCC 431 Query 344 TTGGACTGCTGGGAGGAATGTGCACAGCCAAAAGTTGTTGTCAAAATCGAG-GACGAGGA 402 ||| || | ||||| | ||||| ||||||||||||||||||||||| || | ||||| Sbjct 432 TTGAACAGATGGGAATATTGTGCTCAGCCAAAAGTTGTTGTCAAAATTGAAAGT-GAGGA 490 Query 403 CGAGATGCTAGAATTGCAAGAAAGAGCTAA-ATCCCTTAAACTGCCTACCCATATCACCA 461 |||||||||| |||||||||||||| || | |||| |||||||| ||||||||||||| Sbjct 491 AGAGATGCTAGTTTTGCAAGAAAGAGCAAAGA-CCCTGAAACTGCCAACCCATATCACCA 549 Query 462 TTGATGCTGGAAGAACCCAGATTGCCCCAAATTCAAGGACGGTTATGGCTATTCTTGGAC 521 ||||||| |||| ||| ||||| || |||||||||||||| || |||||||||||||||| Sbjct 550 TTGATGCGGGAAAAACACAGATCGCTCCAAATTCAAGGACAGTAATGGCTATTCTTGGAC 609 Query 522 CAGTCGA-AGTTGTTGATGAAGTAACAGGTGGACTAAAGCTT 562 | || || | | |||||||||||||||||||||||||||||| Sbjct 610 CTGTTGATAAT-GTTGATGAAGTAACAGGTGGACTAAAGCTT 650 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35515541929 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5