BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488549
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16870.1 | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) fam... 1144 0.0
AT3G03010.1 | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) fam... 424 8e-118
> AT5G16870.1 | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) family
protein | chr5:5546811-5548736 REVERSE LENGTH=729
Length=729
Score = 1144 bits (619), Expect = 0.0
Identities = 698/735 (95%), Gaps = 9/735 (1%)
Strand=Plus/Plus
Query 1 ATCATCAGAGCCGTTTCTCTCTCTCTGGAACTCGATTTAAGTATTTGAGTCTTGCCAAAT 60
|||||| |||||||||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct 1 ATCATCGGAGCCGTTTCTCTCTCTC--GAACTCGATTTAAGTATTTGAATCTTGCC-AAT 57
Query 61 GGATTTGACGTGGTTAAGTGCCCTAATTGTTGGAGCTGCACTTGGATTCTGCATTGGCAC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 58 GGATTTGACGTGGTTAAGTGCCCTAATTGTTGGAGCTGCACTTGGATACTGCATTGGCAC 117
Query 121 TCGCCGTTCCAAACCTGTTGTTGCTGCTGTTGATGGGGATACCAAAAAC-CAATCCTCCA 179
|||||||||||||||||||||||||||||||||| ||||| | ||||| ||||||||||
Sbjct 118 TCGCCGTTCCAAACCTGTTGTTGCTGCTGTTGATAAGGATATC-AAAACTCAATCCTCCA 176
Query 180 AGGGTCCTCTCGAAATCGAGAAACTCGCTGATATTCTCGATGATTTCAAGATGGTTTTGG 239
| |||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AAAGTCCACTCGAGATTGAGAAACTCGCTGATATTCTCGATGATTTCAAGATGGTTTTGG 236
Query 240 TTGTGAGGAATGATCTTAAAATGGGTAAAGGAAAGATTGCAGCTCAATGCAGTCATGCAA 299
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TGGTGAGAAATGATCTTAAAATGGGTAAAGGAAAGATTGCAGCTCAATGCAGTCATGCAA 296
Query 300 CTTTAGGTTTATACAAAAAGCTTGTTCGTCGAGCACCAAAAGCATTGGACTGCTGGGAGG 359
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 297 CTTTAGGATTATACAAGAAGCTTGTTCGTCGAGCGCCAAAAGCATTGGACTGCTGGGAGG 356
Query 360 AATGTGCACAGCCAAAAGTTGTTGTCAAAATCGAGGACGAGGACGAGATGCTAGAATTGC 419
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 357 AATGTGCACAGCCAAAAGTTGTTGTGAAAATCGAGGACGAGGACGAGATGCTAGAATTGC 416
Query 420 AAGAAAGAGCTAAATCCCTTAAACTGCCTACCCATATCACCATTGATGCTGGAAGAACCC 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 417 AAGAAAGAGCTAAATCCCTTAAACTGCCTACCCATATCACCATTGATGCTGGAAGAACAC 476
Query 480 AGATTGCCCCAAATTCAAGGACGGTTATGGCTATTCTTGGACCAGTCGAAGTTGTTGATG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AGATTGCCCCAAATTCAAGGACGGTTATGGCTATTCTTGGACCAGTCGAAGTTGTTGATG 536
Query 540 AAGTAACAGGTGGACTAAAGCTTCTTTAGAAGCTTCGTATTTCGATATGACATATCTTCA 599
||||||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||
Sbjct 537 AAGTAACAGGTGGACTAAAGCTTCTTTAGCAGATTCGAATTTCGATATGACATTTCTTCA 596
Query 600 ACCTGATCTCTCAGATAGACCAAGCAGAAGGGAGAGGCATGAACTCCACCTTTTCTGGTT 659
|||||||||||||||| |||||||||||| |||||| ||||||||||||||| |||| ||
Sbjct 597 ACCTGATCTCTCAGATGGACCAAGCAGAAAGGAGAGACATGAACTCCACCTTCTCTG-TT 655
Query 660 -GCCC-AGGGTTACCTGTGAGAAATCTGTAGTTGTTACGTTTACTCGTTCCTGATGATGA 717
|||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 656 CGCCCGAGG-TTACCTGTGAGAAATCTGTAGTTGTTACGTATACTCGTTCCTGATGATGA 714
Query 718 CGAAATATCCATTTT 732
|||||||| ||||||
Sbjct 715 CGAAATATTCATTTT 729
> AT3G03010.1 | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) family
protein | chr3:678688-680605 REVERSE LENGTH=950
Length=950
Score = 424 bits (229), Expect = 8e-118
Identities = 346/402 (86%), Gaps = 10/402 (2%)
Strand=Plus/Plus
Query 165 AAAACCAATCCTCCAAGGGTCCTCTCGAAATCGAGAAACTCGCTGATATTCTCGATGATT 224
|||||||| ||||||| || ||||| || ||||||||||||||| ||| | | |||
Sbjct 255 AAAACCAA--GTCCAAGGAACCCCTCGAGATAGAGAAACTCGCTGATTTTCGCAAAAATT 312
Query 225 TCAAGATGGTTTTGGTTGTGAGGAATGATCTTAAAATGGGTAAAGGAAAGATTGCAGCTC 284
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 313 TCAAAATGGTTTTGGTTGTGAGGAATGATCTTAAAATGGGTAAAGGGAAGATTGCAGCTC 372
Query 285 AATGCAGTCATGCAACTTTAGGTTTATACAA-AAAGCTTGTTCGTCGAGCACCAAAAGCA 343
||||||||||||||||||||||||||||||| ||| || ||| || || ||||||||
Sbjct 373 AATGCAGTCATGCAACTTTAGGTTTATACAAGAAA-CTCCTTCAACGGGCGCCAAAAGCC 431
Query 344 TTGGACTGCTGGGAGGAATGTGCACAGCCAAAAGTTGTTGTCAAAATCGAG-GACGAGGA 402
||| || | ||||| | ||||| ||||||||||||||||||||||| || | |||||
Sbjct 432 TTGAACAGATGGGAATATTGTGCTCAGCCAAAAGTTGTTGTCAAAATTGAAAGT-GAGGA 490
Query 403 CGAGATGCTAGAATTGCAAGAAAGAGCTAA-ATCCCTTAAACTGCCTACCCATATCACCA 461
|||||||||| |||||||||||||| || | |||| |||||||| |||||||||||||
Sbjct 491 AGAGATGCTAGTTTTGCAAGAAAGAGCAAAGA-CCCTGAAACTGCCAACCCATATCACCA 549
Query 462 TTGATGCTGGAAGAACCCAGATTGCCCCAAATTCAAGGACGGTTATGGCTATTCTTGGAC 521
||||||| |||| ||| ||||| || |||||||||||||| || ||||||||||||||||
Sbjct 550 TTGATGCGGGAAAAACACAGATCGCTCCAAATTCAAGGACAGTAATGGCTATTCTTGGAC 609
Query 522 CAGTCGA-AGTTGTTGATGAAGTAACAGGTGGACTAAAGCTT 562
| || || | | ||||||||||||||||||||||||||||||
Sbjct 610 CTGTTGATAAT-GTTGATGAAGTAACAGGTGGACTAAAGCTT 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35515541929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5