BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488550
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16880.1 | Symbols: | Target of Myb protein 1 | chr5:554891... 2364 0.0
> AT5G16880.1 | Symbols: | Target of Myb protein 1 | chr5:5548914-5551463
FORWARD LENGTH=1655
Length=1655
Score = 2364 bits (1280), Expect = 0.0
Identities = 1495/1598 (94%), Gaps = 18/1598 (1%)
Strand=Plus/Plus
Query 1 GAAGGGAGACATAGTCGGGATAAAGTTATTCCCGCGGCCAAACACTTAAAAAAGAAACGC 60
||||||| |||||||| ||||||||| |||||| || ||||||||||||||||| |||||
Sbjct 1 GAAGGGAAACATAGTCAGGATAAAGTAATTCCCACGACCAAACACTTAAAAAAGGAACGC 60
Query 61 AGTTTTATTCTGCTTCAGAATTTGTACGGCGTCAACGGGCCATTGACCTTGTCGCAGGTT 120
|||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 61 AGTTTTCTTCTTCTTCAGGATTTGTACGGCGTCAACGGG-CATTGACCTTGTCGCAGATT 119
Query 121 TTCCTCTCTAGTCTCC-T-TTAT-TTCACCAGATCGAGCTTTGTTCTTCGAGCTTCTCAT 177
|||||||||||||||| | || | || |||||||||||||||||||||||||||||||||
Sbjct 120 TTCCTCTCTAGTCTCCGTCTTCTATT-ACCAGATCGAGCTTTGTTCTTCGAGCTTCTCAT 178
Query 178 CTCTTTGTTCAATCTCAAAGGTACTTGCTGTGTTTCATTTACAGG--TTTGAGTATCAGC 235
|||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||
Sbjct 179 CTCTTTGTTCAATCTCAAAGGTTCTTGCTGTTTTTCATTTACAGGTTTTTGAGTATCAGC 238
Query 236 AAAGATGAGTGACAATCTGATGGACAAAGTTACCGCATTTGGTGAGCGCCTGAAGATTGG 295
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 239 AAAGATGGGTGACAATCTTATGGACAAAGTTACCGCATTTGGTGAGCGCCTGAAGATCGG 298
Query 296 TGGTTCAGAAGTGAGCAACAAGATCAGTGCTGGTGTGAGCTCAATGAGCTTCAAAGTGAA 355
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 299 AGGTTCGGAAGTGAGCAACAAGATCAGTGCTGGTGTGAGCTCAATGAGCTTTAAAGTGAA 358
Query 356 GGAACTTTTTCAAGGTCCAAACCCTACTGATAAAATAGTCGAGGATGCTACTACGGAGAA 415
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 359 GGAACTTTTTCAAGGTCCAAACCCAACTGATAAAATAGTCGAAGATGCTACTACTGAGAA 418
Query 416 TCTAGAAGAACCTGACTGGGATATGAATTTGGAAATATGTGATATGATAAATCAAGAGAC 475
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 419 TCTAGAGGAACCTGACTGGGATATGAATTTGGAAATTTGTGATATGATAAATCAAGAGAC 478
Query 476 AATTAATAGCGTTGAGTTGATCCGTGGGATAAAGAAGAGGATAATGATGAAGCAGCCGAG 535
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 479 AATTAATAGCGTTGAGTTGATCCGTGGTATAAAGAAGAGGATTATGATGAAGCAGCCGAG 538
Query 536 AATTCAGTACCTTGCCTTGGTGTTGCTCGAGACGTGTGTTAAGAACTGTGAGAAGGCATT 595
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 539 GATTCAGTACCTTGCCTTGGTTTTGCTCGAGACGTGTGTTAAGAACTGTGAGAAGGCGTT 598
Query 596 TTCAGAAGTGGCAGCTGAAAGAGTCCTTGATGAAATGGTAAAGCTGATTGATGATCCACA 655
|||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTCAGAGGTGGCAGCAGAGAGAGTCCTTGATGAAATGGTAAAGCTGATTGATGATCCACA 658
Query 656 AACAGTTGTGAATAATCGAAACAAGGCTTTGATGCTGATTGAAGCTTGGGGAGAATCCAC 715
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 659 AACAGTTGTTAATAACCGAAACAAAGCTTTGATGCTGATTGAAGCTTGGGGAGAATCAAC 718
Query 716 CAGTGAACTCCGCTACCTACCAGTTTTCGAAGAAACTTATAAGAGCTTAAAAGCAAGAGG 775
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CAGTGAACTTCGCTACCTACCAGTTTTCGAAGAAACTTATAAGAGCTTAAAAGCAAGAGG 778
Query 776 TATTCGCTTCCCTGGACGAGACAACGAGAGCTTGGCACCTATTTTCACTCCTGCTCGATC 835
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 779 TATTCGCTTCCCTGGACGAGACAACGAAAGCTTGGCACCTATTTTCACTCCTGCTCGGTC 838
Query 836 AACTCCAGCACCAGAAGTAAATGCTGATATTCCTCAGCATGTGCATGAGCCCGCACATAT 895
|||||||||||||||| | ||||||||| ||||||||||||||||||| || ||||||||
Sbjct 839 AACTCCAGCACCAGAACTGAATGCTGATCTTCCTCAGCATGTGCATGAACCTGCACATAT 898
Query 896 TCAGTATGATGCT-CCTGTAAGAAGCTTTACCGCTGAGCAGACAAAGGAAGCTTTCGATA 954
|||||||||| | ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 899 CCAGTATGATG-TGCCTGTAAGAAGCTTTACTGCTGAGCAGACAAAGGAAGCTTTTGATA 957
Query 955 TAGCAAGAAACAGCATTGAACTTCTTTCCACGGTTCTGTCCTCCTCACCTCAACATGATG 1014
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 958 TAGCAAGAAACAGCATTGAACTTCTTTCCACGGTTCTGTCCTCCTCGCCTCAACATGATG 1017
Query 1015 CTTTACAGGATGACTTAACAACGACACTTGTACAACAATGTCGTCAATCTCAAACCACTG 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CTTTACAGGATGACTTAACAACGACACTTGTACAACAATGTCGTCAATCTCAAACCACTG 1077
Query 1075 TCCAAAGAATCATCGAAACAGCAGGTGAAAACGAAGCACTTCTATTT-GAAGCCTTGAAT 1133
||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 1078 TCCAAAGAATCATTGAAACAGCAGGTGAAAACGAAGCCCTTCT-TTTCGAAGCCTTGAAT 1136
Query 1134 GTGAACGACGAGCTAGTGAAAACGCTGTCCAAGTATGAAGATATGAACAAACCCTCTGCA 1193
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 1137 GTGAACGACGAGCTAGTGAAAACGCTGTCTAAGTATGAGGAGATGAACAAACCCTCTGCA 1196
Query 1194 CCGCTAACCACACATGAGCCAGCCATGATTCCTGTTGCTGAAGAGCCTGATGACTCTCCG 1253
||||||||| ||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 1197 CCGCTAACCTCACATGAACCAGCCATGATTCCCGTTGCTGAAGAGCCCGATGACTCTCCA 1256
Query 1254 GTTCATGGAAAAGAAGAATCTCTGGTTAGAAAATCTTCTGGTGTTCGAGGTGGATTCCAT 1313
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 ATTCATGGAAGAGAAGAATCTCTGGTTAGAAAATCTTCTGGTGTTCGAGGTGGATTCCAT 1316
Query 1314 GGAGGAGGTAGT-G-GG-GATGACATGATGGATGATCTTGATGAGATGATATTCGGTAAG 1370
||||| ||| || | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GGAGGGGGTGGTAGTGGAGATGACATGATGGATGATCTTGATGAGATGATATTCGGTAAG 1376
Query 1371 AAAAGCGGCGGTGGTTCTTCGACTAATACTGATCATGACTTGAAAAAGGAGCAGTCTTCG 1430
|||| |||| ||| ||||||||||||| | ||||||||| |||||||||||||| ||
Sbjct 1377 AAAAACGGCTGTGATTCTTCGACTAATCCAGATCATGACCCAAAAAAGGAGCAGTCCTCA 1436
Query 1431 TCCAAAAACGACGATCTCATTCGATTCTGAGACTGtttttttCAAGCAAAATAATAACTC 1490
||||||||||||||||||||||||||||||||| | | ||||| || | ||||||| ||
Sbjct 1437 TCCAAAAACGACGATCTCATTCGATTCTGAGACGGATACTTTCAGGCGACATAATAAATC 1496
Query 1491 TTTTAATGGATGGATTTGGTGTTTATTTGGTAGTATGAATGAACAGATTCTCAATGTAAG 1550
||||| | ||| |||||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 1497 TTTTA-TA-ATGTATTTGGTGTTTAATTGGTAGTATGAATGAACAGGTTC--AATGTAAG 1552
Query 1551 TAATCTGTGTTTGGAGATCTCTTCGACTTGTGTGATGG 1588
||||||||||||||||||||||| ||||||||||||||
Sbjct 1553 TAATCTGTGTTTGGAGATCTCTTTGACTTGTGTGATGG 1590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78413251290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5