BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488555
Length=928
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16920.1 | Symbols: | Fasciclin-like arabinogalactan family... 1122 0.0
> AT5G16920.1 | Symbols: | Fasciclin-like arabinogalactan family
protein | chr5:5567011-5568128 FORWARD LENGTH=1118
Length=1118
Score = 1122 bits (607), Expect = 0.0
Identities = 733/790 (93%), Gaps = 23/790 (3%)
Strand=Plus/Plus
Query 28 aaaaaTGAGAGCTATTCAAACTCAAGTGATAACCTTCTGCATGTTAGTCATCATCGTAAC 87
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 70 AAAAATGAGAGCTATTCAAACTCATGTGATAACCTTCTGCATGTTAGTCATCATCGTAAC 129
Query 88 ATCATCAACAAGAGCCCAAAAGAGTCATCATGTGCCAAACAACCATGAACTTTCTGTCGC 147
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||
Sbjct 130 ATCATCAACAAGAGCCCAAAAGAGTCCTCATGTGCCTAACAACCATGAACTTTCTATCGC 189
Query 148 CATCGAAGAAATGGAGAAAGCAAATTACTTCTCTTTTGTGATGCTTATCAACATGTTACC 207
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 190 CATCGAAGAAATGGAGAAAGCAAATTACTTCTCTTTTGTGATGCTCATCAACATGTTACC 249
Query 208 ATCCGTAAATCCTCGATTCTTAGCCAATGTCACATTCTTGATGCCAAAGGACAAAACCCT 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 ATCCGTAAATCCTCGATTCTTAGCCAATGTCACATTCTTGATGCCAAAGGACAAAACCCT 309
Query 268 TTCTAGATCAAACATTATTAATCAACAGGATTCGGTTTCTGAGTTCTTGCTTCGCCACTC 327
||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct 310 TTCTACATCAAACATTATTAATCAACAAGATTCGGTTACCGAGTTCTTGCTTCGCCACTC 369
Query 328 AATCCCTTCCTCTCTTCTTTTCGAGCATCTCAATCTCATCCCCAATGGCTCCATTGTTCC 387
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 370 AATCCCTTCTTCTCTTCTTTTCGAGCACCTTAATCTCATCCCCAATGGCTCCATTGTTCC 429
Query 388 TTCCTCTTTACCACATTACACCCTCGAGATCTCCAATGGTGGAAGATCAAACTACTTTCT 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TTCCTCTTTACCACATTACACCCTCGAGATCTCCAATGGTGGAAGATCAAACTACTTTCT 489
Query 448 CAATAATGTCAAGATTATAAGCCGCAACATTTGTAGCTTAGGCTCTATCAAATGTCATGG 507
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 490 CAATAACGTCAAGATTATAAGCCGCAACATATGTAGCTTAGGCTCTATCAAATGTCATGG 549
Query 508 AATTGACGGTATCCTACAATCTCCAAGTACTATCGACGATGATTCTCCTC-ATAATAATC 566
||| |||||||| |||||||||||||||||| ||||||| |||||||||| | |||||||
Sbjct 550 AATCGACGGTATACTACAATCTCCAAGTACTGTCGACGACGATTCTCCTCGA-AATAATC 608
Query 567 ACACTTTACCCTTCATTTCTTGCCCTAGCAGTCACAACAATAGTGACCAAAGTAGTCATA 626
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 609 ACACATTACCCTTCATTTCTTGCCCTAGCAGTCACAACAATAGTGACCAAAATAGTCATA 668
Query 627 ACAATAGT--TC----T----CT--TCCTACT---CATACTCTTACCGCTCCTCCACCAG 671
|||||||| || | || |||| || |||||||||||||||||||| ||||
Sbjct 669 ACAATAGTGATCAAAATAGTTCTCGTCCTGCTGATCATACTCTTACCGCTCCTCCTCCAG 728
Query 672 CCAGCAGTCC------CCTGCCAAAATCAGATTCTCCAAGCATCCATGAGGTGGAAATGT 725
||||||||| || |||||||||||||||||| ||||||||||| ||| |||||
Sbjct 729 TCAGCAGTCCGATTAGCCAGCCAAAATCAGATTCTCCTAGCATCCATGACGTGAAAATGC 788
Query 726 TAAATTCGATCGTTATTCCTTTGCTTGGATTATTAGCGGGTTTGATCTGCATGTGAAGTA 785
| | ||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 789 TGACTTCGATCGTTATTCCTTTGTTTGGATTATTAGCGAGTTTGATCGGCATGTGAAGTA 848
Query 786 TACTACTGCA 795
|| |||||||
Sbjct 849 TAATACTGCA 858
Score = 111 bits (60), Expect = 9e-24
Identities = 127/155 (82%), Gaps = 21/155 (14%)
Strand=Plus/Plus
Query 794 CATTGTGTGTAATAGTACTCTCTTGTTATAGTTTATATCTAC-A----CATGTAAAAGaa 848
|||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 891 CATTGTGTGTAATAGTACTCTCTTGTTATAGTTTATATTTACTATATACATGTAAAAGAA 950
Query 849 aaaaa----TG----T-A----A-CAATCAATTCAATT-TGAGTTTTAATTTTAAAATTT 893
||||| || | | | |||||| || |||| ||||||| | |||| ||||||
Sbjct 951 AAAAAACGATGAACCTTATTGTAACAATCAGTTAAATTATGAGTTT-AGTTTTTAAATTT 1009
Query 894 CCTTTATAATATCTATTTAGAGACTTTCCTCCAAA 928
|||||||||||| | ||||||||||||||||||||
Sbjct 1010 CCTTTATAATATTTCTTTAGAGACTTTCCTCCAAA 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45361434741
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5