BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488557

Length=692
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G16940.1 | Symbols:  | carbon-sulfur lyases | chr5:5571550-5...   798    0.0  


> AT5G16940.1 | Symbols:  | carbon-sulfur lyases | chr5:5571550-5572390 
REVERSE LENGTH=742
Length=742

 Score =  798 bits (432),  Expect = 0.0
 Identities = 495/526 (94%), Gaps = 2/526 (0%)
 Strand=Plus/Plus

Query  1    TGAACAAAATTTGAGAATTTTCATCGATCGCTAAATATACACACTGTTCAACAAAATCTG  60
            |||||||||| ||||||| |||||||||||| ||||| |||||||| |||||||||||||
Sbjct  9    TGAACAAAATCTGAGAATCTTCATCGATCGCGAAATAAACACACTGGTCAACAAAATCTG  68

Query  61   ATTTAAGCAATAATTAGGCATGGAATCAGAGTTGAGACTTCATGAAGGTGGATGTCATTG  120
            |||| ||||||||||||| |||||||||||||| | | ||||||||||||||||||||||
Sbjct  69   ATTTCAGCAATAATTAGGAATGGAATCAGAGTTAATATTTCATGAAGGTGGATGTCATTG  128

Query  121  TGGGAAAATCAAATGGAGAGTTAAAGCAGCAACAAGTGTGGTGGCTTGGAGATGCAATTG  180
            |||||||||||||||||||||||||||||||| ||||||| | |||||||| ||||| ||
Sbjct  129  TGGGAAAATCAAATGGAGAGTTAAAGCAGCAAGAAGTGTGATTGCTTGGAGCTGCAACTG  188

Query  181  CTCAGATTGTTCAATGAGAGGCAATGTTCACTTTATTGTTCCTTCAAGCAACTTTGAACT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  189  CTCAGATTGTTCAATGAGAGGCAATGTTCACTTTATTGTTCCTTCAAGCAACTTTGAGCT  248

Query  241  TCTTGATGATTCCAAAG-ACTTCATTACTACTTACACTTTTGGGACTCACACGGCCAAGC  299
            ||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct  249  TCTTGATGACTC-AAAGGACTTCATTACTACTTACACTTTTGGGACTCACACGGCCAAAC  307

Query  300  ATACCTTCTGCAAGGTTTGTGGGATCACATCGTTTTATATCCCGAGATCTAACCCCGATG  359
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct  308  ATACCTTCTGCAAGGTTTGTGGGATCACATCGTTTTATATCCCGAGGTCTAACCCTGATG  367

Query  360  GAGTCGCTGTCACAGTTAAGTGTGTCAAGTCAGGGACACTGGATCACGTCGAGGTCAAAA  419
            ||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||
Sbjct  368  GAGTCGCTGTCACAGTTAAGTGTGTCAAGTCGGGGACACTGGCTCACATCGAGGTCAAAA  427

Query  420  GCTATGATGGTCAGAACTGGGAAGTGTCTCACAAAAAGACCGGTATTGCCTCCTTTTCCA  479
            ||||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||
Sbjct  428  GCTATGATGGTCAGAACTGGGAAATGTCGCACAAAAAGACTGGTATTGCCTCGTTTTCCA  487

Query  480  AGGAGTGATATGATAAGATCAACTCAAGATTGTAATGGCTAAGaaa  525
            ||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct  488  AGGAGTGATATGACAAGATCAACTCAAGATGGTAATGGCTAAGAAA  533



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33506176049


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5