BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488569
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17060.1 | Symbols: ATARFB1B, ARFB1B | ADP-ribosylation fact... 1105 0.0
AT3G03120.1 | Symbols: ATARFB1C, ARFB1C | ADP-ribosylation fact... 697 0.0
> AT5G17060.1 | Symbols: ATARFB1B, ARFB1B | ADP-ribosylation factor
B1B | chr5:5610806-5613065 FORWARD LENGTH=1150
Length=1150
Score = 1105 bits (598), Expect = 0.0
Identities = 634/652 (97%), Gaps = 0/652 (0%)
Strand=Plus/Plus
Query 190 ttttttttGGGTATCGGAGCCATGGGTCAAGCTTTTCGTAAGCTATTCGATACTTTCTTC 249
|||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 230 TTTTTTTTGGGTTTGGGAGCGATGGGTCAAGCTTTTCGTAAGCTATTCGATACTTTCTTC 289
Query 250 GGAAATCAAGAAATGAGGGTCGTTATGCTGGGGCTGGATGCTGCTGGCAAAACAACTATT 309
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 290 GGCAATCAAGAAATGAGGGTCGTTATGCTGGGGCTGGATGCTGCTGGAAAAACAACTATT 349
Query 310 CTCTACAAGCTTCATATTGGAGAAGTTTTGTCTACTGTTCCCACCATTGGATTTAATGTT 369
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 350 CTCTACAAGCTTCATATTGGAGAAGTTTTGTCTACTGTTCCCACCATTGGATTCAATGTT 409
Query 370 GAGAAAGTTCAGTACAAGAATGTGATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAA 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 GAGAAAGTTCAGTACAAGAATGTGATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAA 469
Query 430 CTGAGACCTCTTTGGAGGCACTACTTCAATAATACTGATGGACTTATTTACGTGGTGGAT 489
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 470 CTGAGACCTCTTTGGAGGCATTACTTCAATAATACTGATGGACTTATATACGTGGTGGAT 529
Query 490 TCCTTAGATCGAGAGAGGATCGGGAAAGCAAAACAAGAATTTCAGGAGATCATAAAAGAC 549
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 530 TCCTTAGATCGAGAGAGGATCGGGAAAGCAAAGCAAGAATTTCAGGAGATCATAAAAGAC 589
Query 550 CCATTCATGCTAAACAGTATCATTCTGGTGTTTGCAAACAAACAGGACATGAGAGGAGCC 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 CCATTCATGCTAAACAGTATCATTCTGGTGTTTGCAAACAAACAGGACATGAGAGGAGCC 649
Query 610 ATGTCACCGAGAGAAGTATGTGAAGGGCTAGGCTTATTTGATCTCAAGAACAGGAAATGG 669
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 650 ATGTCACCGAGAGAAGTATGTGAAGGGTTAGGCTTATTTGATCTCAAGAACAGGAAATGG 709
Query 670 CACATACAAGGTACCTGTGCTCTTCGTGGAGATGGGCTTTATGAAGGCTTGGACTGGTTA 729
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 710 CACATACAAGGTACTTGTGCTCTTCGTGGAGACGGGCTTTATGAAGGCTTGGACTGGTTA 769
Query 730 TCATCTACTCTTAAAGATGTTAAAGCCGCTGGATTCACATCGGTTGGCCCCTCGTTTTAA 789
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 770 TCATCTACTCTTAAGGATGTTAAAGCCGCTGGATTCACATCGGTTGGCCACTCGTTTTAA 829
Query 790 CTCTCCCAGGTATACTTTGATATCCATGGCCAATGTCTTCTTCTTGGCTTTA 841
||| ||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 830 ATCTTCCAGGTATACTTTGATATCAATGGCCAGTGTCTTCTTCTTGGCTTTA 881
Score = 255 bits (138), Expect = 4e-67
Identities = 176/193 (91%), Gaps = 8/193 (4%)
Strand=Plus/Plus
Query 2 TGAAAGGAATATGAATATTCCGTTGAAGA---CTTTCTCCTGAAATCGTTTGGACCGAAA 58
||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct 10 TGAAAGGAATATGAATATTCCGTTGAAGAAGACTTGCTCCTGAAATCCTTTGGACCGAAA 69
Query 59 CGCGTACAATTATT-CCCTTCAATTTCTCTGCAATCTCTTCACCGTCTCCTCTT-TCTCC 116
| |||| ||||||| |||||||||||||||| ||||| ||||||||||||| || |||||
Sbjct 70 CTCGTAAAATTATTTCCCTTCAATTTCTCTGAAATCTATTCACCGTCTCCT-TTGTCTCC 128
Query 117 TCCTCCAAAATCGATCGTTCGTCGTCGTCGTCTGATTTTCTCTACGATTTCTTTTTTCTG 176
||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| |||
Sbjct 129 TCCTCCAAA-TCGATCGTTCCTCGTCGTCGTCTGATTTTCTCTACGATTGCTTTTT-CTG 186
Query 177 TCTAGCTCGGTAA 189
||||||||| |||
Sbjct 187 TCTAGCTCGATAA 199
> AT3G03120.1 | Symbols: ATARFB1C, ARFB1C | ADP-ribosylation factor
B1C | chr3:717153-719315 FORWARD LENGTH=1172
Length=1172
Score = 697 bits (377), Expect = 0.0
Identities = 514/581 (88%), Gaps = 6/581 (1%)
Strand=Plus/Plus
Query 211 ATGGGTCAAGCTTTTCGTAAGCTATTCGATACTTTCTTCGGAAATCAAGAAATGAGGGTC 270
||||||||| ||||||| ||||| |||||||| |||||||| || || || |||||||||
Sbjct 193 ATGGGTCAAACTTTTCGCAAGCTTTTCGATACCTTCTTCGGCAACCAGGAGATGAGGGTC 252
Query 271 GTTATGCTGGGGCTGGATGCTGCTGGCAAAACAACTATTCTCTACAAGCTTCATATTGGA 330
||||||||||| |||||||| |||||||||||||| || || |||||||| || || |||
Sbjct 253 GTTATGCTGGGTCTGGATGCGGCTGGCAAAACAACGATACTATACAAGCTCCACATAGGA 312
Query 331 GAAGTTTTGTCTACTGTTCCCACCATTGGATTT-AATGTTGAGAAAGTTCAGTACAAGAA 389
|||||| |||||||||||||||| || || ||| ||||||||||||||||||||||||||
Sbjct 313 GAAGTTCTGTCTACTGTTCCCACAATCGG-TTTCAATGTTGAGAAAGTTCAGTACAAGAA 371
Query 390 TGTGATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAACTGAGACCTCTT-TGGAGGC 448
||| || |||||||||||||||||||||||||||||||| ||||| || ||| |||||||
Sbjct 372 TGTCATCTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAGCTGAGGCC-CTTGTGGAGGC 430
Query 449 ACTACTTCAATAATACTGATGGACTTATTTACGTGGTGGATTCCTTAGATCGAGAGAGGA 508
| |||||||||||||| ||||||||||| |||||||| || ||||| || ||||||||||
Sbjct 431 ATTACTTCAATAATACCGATGGACTTATATACGTGGTAGACTCCTTGGACCGAGAGAGGA 490
Query 509 TCGGGAAAGCAAAACAAGAATTTCAGGAGATCATAAAAGACCCATTCATGCTAAACAGTA 568
| || ||||| || |||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct 491 TTGGTAAAGCGAAGCAAGAATTTCAGGATATCATAAGGGACCCATTCATGCTCAACAGTG 550
Query 569 TCATTCTGGTGTTTGCAAACAAACAGGACATGAGAGGAGCCATGTCACCGAGAGAAGTAT 628
||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 551 TCATTCTAGTGTTTGCAAACAAACAAGACATGAGAGGAGCCATGTCTCCTCGAGAAGTAT 610
Query 629 GTGAAGGGCTAGGCTTATTTGATCTCAAGAACAGGAAATGGCACATACAAGGTACCTGTG 688
|||||||||| |||||| ||||||||||||||||||||||||| |||||||| || ||||
Sbjct 611 GTGAAGGGCTTGGCTTACTTGATCTCAAGAACAGGAAATGGCATATACAAGGCACATGTG 670
Query 689 CTCTTCGTGGAGATGGGCTTTATGAAGGCTTGGACTGGTTATCATCTACTCTTAAAGATG 748
|||||| ||||||||||| ||||||||||| ||||||||||| |||| || ||||| |
Sbjct 671 CTCTTCAAGGAGATGGGCTCTATGAAGGCTTAGACTGGTTATCCGCTACACTCAAAGAGG 730
Query 749 TTAAAGCCGCTGGATT-CACATCGGTTGGCCCCTCGTTTTA 788
||||||||||||| || | |||| ||||| |||||||||||
Sbjct 731 TTAAAGCCGCTGG-TTACTCATCAGTTGGTCCCTCGTTTTA 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40991063952
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5