BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488572

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G17130.1 | Symbols:  | cysteine-type peptidases | chr5:56369...   592    1e-168


> AT5G17130.1 | Symbols:  | cysteine-type peptidases | chr5:5636972-5637534 
FORWARD LENGTH=372
Length=372

 Score =  592 bits (320),  Expect = 1e-168
 Identities = 351/366 (96%), Gaps = 2/366 (1%)
 Strand=Plus/Plus

Query  1    ATGGAAGACTACAATGAT-GTTTTCGGTGGCATTGGAACCGGAGGAGGGAAAGGCAAAGG  59
            |||||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||||
Sbjct  1    ATGGAAGACTACAATGGTGGTTTT-GGTGGCATTGGAACCGGGGGAGGGAAAGGCAAAGG  59

Query  60   GAAAAATATACCAAACCAATGCAAACTGGATGTTGAAGCTCGACGTGAACAAGCGAAGAA  119
             |||||||||||||||||| |||| || ||||||||||||| ||||||||||||||||||
Sbjct  60   AAAAAATATACCAAACCAACGCAAGCTAGATGTTGAAGCTCAACGTGAACAAGCGAAGAA  119

Query  120  AACACAACAAGCTGGTGAAAGAGCAGAATCAGTCGAAGAATTTCCAATTCCAGAAGATTA  179
            ||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct  120  AACACAACAAGATGGTGAAAGAGCAGAATCAGTCGAGGAATTTCCAATTCCAAAAGATTA  179

Query  180  TGGGGATGGTAGTCGTATCGATTTCTGTTGGACTCGTACACATAAGCATTTGCTACAAAG  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  180  TGGGGATGGTAGTCGTATCGATTTCTGTTGGACTCGTACACATAAGCATTTGCTACAGAG  239

Query  240  AATTGTAGAGCAAAAAGAAGACGACTGTTGGGCTTGGGCTCTAGTTAGAATCTTACAATT  299
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct  240  AATTGTAGAGCAAAAAGAAGACGATTGTTGGGCTTGGGCTCTAGTTAGAATCTTGCAATT  299

Query  300  TTACTACAACATGAACATTACCGCAATTGCTGAGCAGAAGACCTTATCAATCAAATCACT  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  TTACTACAACATGAACATTACCGCAATTGCTGAGCAGAAGACCTTATCAATCAAATCACT  359

Query  360  TGTCAA  365
            ||||||
Sbjct  360  TGTCAA  365



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17141302409


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5