BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488573

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G17140.1 | Symbols:  | Cysteine proteinases superfamily prot...   442    1e-123


> AT5G17140.1 | Symbols:  | Cysteine proteinases superfamily protein 
| chr5:5637830-5638273 FORWARD LENGTH=339
Length=339

 Score =  442 bits (239),  Expect = 1e-123
 Identities = 307/339 (91%), Gaps = 7/339 (2%)
 Strand=Plus/Plus

Query  1    TGTACAAAATCAAGGCAAGCTTTATCACTAAACCCGACGCGACTCCGGATGGAAATCCGA  60
            |||| ||||| |||||||| ||||| || |||||| ||||||||||||| ||||||||||
Sbjct  2    TGTATAAAATAAAGGCAAGTTTTATTACCAAACCCAACGCGACTCCGGA-GGAAATCCGA  60

Query  61   GGATTACTACTCACTCAAGGTCCTATTGGTATAAGTGTTAATGTATGCGGAATATTTGGT  120
            ||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| ||
Sbjct  61   GGATTACTACTCACTCAAGGTCCTATTGGTATAAGTGTTGATTTATGTGGAATATTTCGT  120

Query  121  C--G-TGCTGA--T-GAGGAGATCTATATTTTGCCTGAACCGAAAGAAAATATGAAAAGA  174
            |  | |  |||  |  ||| ||||||| || |||||||||| |||||||||||| |||| 
Sbjct  121  CAAGTTTATGAGTTCAAGGGGATCTATGTTCTGCCTGAACCAAAAGAAAATATGGAAAGG  180

Query  175  CATGCTTTGATCATTGTGGGTTTTGGTACAACAAAAGATGGCAAATTGTTTTTCATTGTC  234
            || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  181  CACGCTTTGATCATTGTGGGTTTTGGTACAACAAAAGATAGCAAATTGTTTTTCATTGTC  240

Query  235  CAAAACACGTGGGGGACAAAATGGGGATTCAACGGATATGCAAGAATTATCATCAAAAAG  294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CAAAACACGTGGGGGACAAAATGGGGATTCAACGGATATGCAAGAATTATCATCAAAAAG  300

Query  295  ACTTGTCCTATATTTGACGTGAGTGGTTTGGTTAACTAA  333
            ||||||||||| ||| |||||||||  ||||||||||||
Sbjct  301  ACTTGTCCTATCTTTTACGTGAGTGAATTGGTTAACTAA  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15532734441


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5