BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488575
Length=468
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17150.1 | Symbols: | Cystatin/monellin superfamily protein... 326 1e-88
AT5G17120.1 | Symbols: | Cystatin/monellin superfamily protein... 309 1e-83
> AT5G17150.1 | Symbols: | Cystatin/monellin superfamily protein
| chr5:5638475-5639592 REVERSE LENGTH=835
Length=835
Score = 326 bits (176), Expect = 1e-88
Identities = 204/218 (94%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 250 AAATTAAACGATGAAAAGGGAAATACTGTGGAATTGGTAGAGATTGTGAGAGCTATTGAA 309
|||||||||||||| |||||| | ||||||||||||||||||||||| |||| ||||||
Sbjct 391 AAATTAAACGATGAGAAGGGACAGACTGTGGAATTGGTAGAGATTGTCAGAGTTATTGAC 450
Query 310 TCAGGAGGAGCTAGATGGAATTCTTATATAACGTTTATGGCTCGAGAGTATTCTAATGGA 369
||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||
Sbjct 451 TCAGGAGGATTTAGATGGTATTCATATATAACGTTTATGGCTCGAGAGTATCCTAATGGA 510
Query 370 CCTCTTGTTGAGTACCAAGCCAAAGTCATGAACTATGCAGGAAACGAGAAACCTCCTTTC 429
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 CCTCTTGTGGAGTACCAAGCCAAAGTCATGAACTATGCAGGAAACGAGAAACCTCCTTTC 570
Query 430 CCTATTCTTTGCAGACCAAGTCCTAAACTCTCTGTTTA 467
|| || ||||||||||||||||||||||||||||||||
Sbjct 571 CCGATACTTTGCAGACCAAGTCCTAAACTCTCTGTTTA 608
Score = 274 bits (148), Expect = 5e-73
Identities = 221/254 (87%), Gaps = 14/254 (6%)
Strand=Plus/Plus
Query 1 ATGGCTCCTGAATCGACGGCGGAACAAGCTTCGGCGACGGATATGGTGAACTCATCGCTC 60
||||||||||||||||||| | ||||||||||| |||||||||||||||| || || ||
Sbjct 1 ATGGCTCCTGAATCGACGGTGAAACAAGCTTCGACGACGGATATGGTGAATTCTTCTCTA 60
Query 61 ATGGAAGAGCACAAAGTCGAAGA-G--GAAG--G-C--A-GC---GATATCGACAGAAGG 108
||||||||||||||||||||||| | |||| | | | || |||||||||||||||
Sbjct 61 ATGGAAGAGCACAAAGTCGAAGAGGAAGAAGAAGACGGAGGCAGTGATATCGACAGAAGG 120
Query 109 TATAAATACGTGCTAGGACCAGAACCGGAGTGGGATTTGGACAGCTACGATGGTCGTGAA 168
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 TATAAATACGTGCCAGGACCAGAACCGGAGTGGGATGTGGACAGCTACGATGGTCGTGAA 180
Query 169 TATGAATCCGATCCCGAAGATCGTCAGTTTTTCTCCGACGAAGACGATTATCAA-GAATT 227
|| ||||||||||| ||||||||||| |||||||||| || || || ||| || ||||
Sbjct 181 TACGAATCCGATCCTGAAGATCGTCAAATTTTCTCCGATGAGGATGAGTAT-AATGAATA 239
Query 228 TCGTATCCGCAAGC 241
|||||||||||||
Sbjct 240 CCGTATCCGCAAGC 253
> AT5G17120.1 | Symbols: | Cystatin/monellin superfamily protein
| chr5:5628529-5629324 REVERSE LENGTH=624
Length=624
Score = 309 bits (167), Expect = 1e-83
Identities = 201/218 (92%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 250 AAATTAAACGATGAAAAGGGAAATACTGTGGAATTGGTAGAGATTGTGAGAGCTATTGAA 309
|||||||||||||| ||||||| ||||||||||||||||||||||| |||| |||||||
Sbjct 406 AAATTAAACGATGAGAAGGGAACGACTGTGGAATTGGTAGAGATTGTAAGAGTTATTGAA 465
Query 310 TCAGGAGGAGCTAGATGGAATTCTTATATAACGTTTATGGCTCGAGAGTATTCTAATGGA 369
| ||||||||||| |||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 466 TTAGGAGGAGCTACATGGAATTCTTATATAACGTTTATGGCTCGTGAGTATCCCAATGGA 525
Query 370 CCTCTTGTTGAGTACCAAGCCAAAGTCATGAACTATGCAGGAAACGAGAAACCTCCTTTC 429
||||||||||||||||| ||||||||||||| |||| |||| | |||||||||||||||
Sbjct 526 CCTCTTGTTGAGTACCATGCCAAAGTCATGAGTTATGTAGGACAGGAGAAACCTCCTTTC 585
Query 430 CCTATTCTTTGCAGACCAAGTCCTAAACTCTCTGTTTA 467
|||||||| |||||||||||||||||||||||||||||
Sbjct 586 CCTATTCTCTGCAGACCAAGTCCTAAACTCTCTGTTTA 623
Score = 233 bits (126), Expect = 9e-61
Identities = 202/235 (86%), Gaps = 19/235 (8%)
Strand=Plus/Plus
Query 24 ACAAGCTTCGGCGACGGATATGGTGAACTCATCGCTCATGGAAGAGCACAAAGTC----- 78
|||||||||| ||||| | ||| ||||||| ||||||||||| ||||||||||||
Sbjct 36 ACAAGCTTCGACGACGAAAATGATGAACTCTTCGCTCATGGAGGAGCACAAAGTCGAAGA 95
Query 79 ----G-A-A-GA-G--GAAGGCAGCGATATCGACAGAAGGTATAAATACGTGCTAGGACC 128
| | | || | ||||||||||||||||||||||| ||||||||||||| || |||
Sbjct 96 GGAAGAAGACGACGACGAAGGCAGCGATATCGACAGAAGATATAAATACGTGCCAGAACC 155
Query 129 AGAACCGGAGTGGGATTTGGACAGCTACGATGGTCGTGAATATGA-ATCCGATCCCGAAG 187
|||||||||||||||| ||||||||||||||||||||||||| || | | ||||| ||||
Sbjct 156 AGAACCGGAGTGGGATGTGGACAGCTACGATGGTCGTGAATACGAGA-CAGATCCTGAAG 214
Query 188 ATCGTCAGTTTTTCTCCGACGAAGAC-GATTATCAAGAATTTCGTATCCGCAAGC 241
|||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 215 ATCGTCAGTTTTTCTCCGACGAAGACAG-TTATCAAGAATTTCGTACCCGCAAGC 268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22253727121
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5