BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488576
Length=1951
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17160.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2584 0.0
AT3G03130.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 202 1e-50
> AT5G17160.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G03130.1);
Has 14330 Blast hits to 10381 proteins in 896 species: Archae
- 94; Bacteria - 2881; Metazoa - 4019; Fungi - 1576; Plants
- 515; Viruses - 110; Other Eukaryotes - 5135 (source: NCBI
BLink). | chr5:5639646-5642513 REVERSE LENGTH=1993
Length=1993
Score = 2584 bits (1399), Expect = 0.0
Identities = 1728/1881 (92%), Gaps = 45/1881 (2%)
Strand=Plus/Plus
Query 1 AAAAAACATCTTGTTTTCTCTGCCAACT-TCAATCTCTCTCCCAACCA-CAAATT-TCTC 57
|||||||||||||||||||||||||| | ||||| ||||||||||||| ||||| ||||
Sbjct 6 AAAAAACATCTTGTTTTCTCTGCCAA-TCTCAATTTCTCTCCCAACCAGAAAATTCTCTC 64
Query 58 A--CTCTCTCGATTTCGCGGAAATGGATTTCCACAGCCTTTTGAGAAGAGATCTTCAATT 115
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 65 ACTCTCTCTCGATTTCGCGGAAATGGATTTCCACAGCCTTTTGAGAAGGGATCTTCAATT 124
Query 116 TCTCTGCAAGAGGAACAAAATCCCAGCCAATATGACCAACCTTGCCATGGCCGATGCTCT 175
||||||||||||||||||||||||||| ||||||||||| | |||||||| ||||||||
Sbjct 125 TCTCTGCAAGAGGAACAAAATCCCAGCTAATATGACCAATATCGCCATGGCTGATGCTCT 184
Query 176 CAAATCTCTTGAGATTGTTGATGGTCTTGATGAATACATGAATCAATCCGAATCCAATGC 235
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 185 CAAATCTCTTGAGATTGTTGATGGTCTTGATGAATACATGAATCAATCTGAATCCAGTGC 244
Query 236 TCAGCAGTCTCCAACCAGTGTAGCAAAGCTGCCACCAAATACTGCAGCTAGAACAACTCG 295
|| ||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 245 TCCGCATTCTCCAACCAGTGTAGCAAAGCTGCCACCAAGCACTGCAACTAGAACAACTCG 304
Query 296 AAGAAAGACCACAACAAAAGCTGAGCCTCAGTCATCATCTCAGTTGGTGTCCCGTTCTTG 355
| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 305 ACGGAAGACCACAACAAAAGCTGAGCCTCAGCCATCATCTCAGTTGGTGTCCCGTTCTTG 364
Query 356 TCGTGCGACGAGCAAGTCTCTTGCTGGAGAAATGGACCAGGATAACATAAAGAAGAGTGT 415
|||| ||||||||||||||||||||||||| ||||||||||| |||||||| |||| |||
Sbjct 365 TCGTTCGACGAGCAAGTCTCTTGCTGGAGATATGGACCAGGAAAACATAAACAAGAATGT 424
Query 416 TGCTCAAGAACCGAAGACTAACACTGTCAGGTTTGAAGCCAATGTGCCCAAAACTCCTGC 475
|||||||||| |||||||| || ||||| ||||||||||||||||| ||||||||| ||
Sbjct 425 TGCTCAAGAAATGAAGACTAGCAATGTCAAGTTTGAAGCCAATGTGCTCAAAACTCCAGC 484
Query 476 AGCACGAAGCACAAGGAAAGCTTCAGCAGCAACTTCTTGTAGTAAGAAGGATGAATTGGT 535
|||| |||||||||||||| ||||||||||||||||||| | ||||||||||||||||||
Sbjct 485 AGCAGGAAGCACAAGGAAAACTTCAGCAGCAACTTCTTGCACTAAGAAGGATGAATTGGT 544
Query 536 CCAGTCGGTCTACAGCACTAGGAGATCAACAAGGCTGTTAGAAAAATGTATGGCTGATCT 595
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 545 CCAGTCGGTCTACAGCACTAGGAGATCAACCAGGCTGTTAGAGAAATGTATGGCCGATCT 604
Query 596 GAGTTTGAAGACTAAAGAAACCT-TGGATAATAAACCTGCCAAGAATGAAGATACAGAAC 654
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 605 GAGTTTGAAGACTAAAGAAA-CTGTGGATAATAAACCTGCCAAGAATGAAGATACAGAAC 663
Query 655 A-AAATGTATCTGCAAAGGAGAAGAATCCAGCTGGTTCAGAGGGTGAAGTTATCCCAGGT 713
| ||| ||||||||| |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 664 AGAAA-GTATCTGCACAGGAGAAGAATCTAACTGGTTCAGAGGGTGAAGTTATCCCAGGT 722
Query 714 AGAGATTTAAGTGTTTCCATGGAACAAGTATGGGAGAACTTGAAGAATGACACTGACCAG 773
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 723 AGAGATTTAAGTGTTTCCATGGAACAAGTATGGGAGAACTTGAAGAATGACAGTGACAAG 782
Query 774 GTAGTTGGAGATCTTGC--T----GTT---ATGGATGCAAATACTGAGACCAACAAGGA- 823
||| ||||||||||| | ||| ||||||||||| || ||| ||||||||||
Sbjct 783 ATAGCTGGAGATCTTGAGGTAATTGTTGTTATGGATGCAAACACGGAGGCCAACAAGGAA 842
Query 824 GAAGATGAATGAAGTTTTGGCTGATGAAAAAG-AATCTGAGAATAGCTTAGTCCAAGCT- 881
|| ||||||||||||| ||||||| |||||| |||||||||||||||||||||||| |
Sbjct 843 GA-GATGAATGAAGTTACGGCTGAT-AAAAAGGAATCTGAGAATAGCTTAGTCCAAG-TA 899
Query 882 GACAAACAAGAAGAAACATTGCATGCTATCTGTGAGGAAGGCCCGAAGAAGAATGACAAT 941
|||||| |||||||||| ||||| || |||||||||||||| ||||||||||||||||||
Sbjct 900 GACAAAGAAGAAGAAACGTTGCAGGCCATCTGTGAGGAAGGTCCGAAGAAGAATGACAAT 959
Query 942 GACCAGGAGATTGAAGATCTTGAGATTTATGTTGATCTT-G--ATATTCCTGTCTTGGAA 998
|| |||||||||| |||||||| ||| ||||||||| || | |||||||| ||||||||
Sbjct 960 GATCAGGAGATTGGAGATCTTGTGATATATGTTGATGTTAGTGATATTCCTCTCTTGGAA 1019
Query 999 TCTGGAAACACTGAGACACACAATGATGATAATGAGTCCAAGAACGTTCTAACT-TTCGA 1057
|||| || ||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 1020 TCTGCAATCACTGAGACACACAATGATGATAATGAGTCCAAGAACGTTCTAGCTATT-GA 1078
Query 1058 TAG-TCCAGTAGACCAACAAGAAACAGAACATGCAATCCAGGAGAATGATTCTGAGCCTG 1116
||| || |||||||||||||||||||||||||||||| |||||||||||| ||||||| |
Sbjct 1079 TAGGTC-AGTAGACCAACAAGAAACAGAACATGCAATTCAGGAGAATGATGCTGAGCCAG 1137
Query 1117 AGACAAAGGTGGACCAAACTGATAGTGATGCTGGTGATTCAAAGCCCAAACAGGCAATTC 1176
||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1138 AGACAAAGGTGAACCAAACCGATAGTGATGCTGGTGATTCAAAAACCAAACAGGCAATTC 1197
Query 1177 AGGAGAATGACTCTGAACCTGAGAAGATCAACAATTTTGATGAAGACACAATGGTGGACC 1236
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1198 AGGAGAATGACTCTGAACCTGAGAAGATCAACAATTTTGATGAAGAGACAATGGTGGACC 1257
Query 1237 AAACCGACAGTGATGCTGGTGATTCAGAAACAGAACCGGAAGAAGATCATTCTGGTGTTG 1296
|||||||||||||| | | |||||||||||||||||| |||||||||||||||
Sbjct 1258 AAACCGACAGTGATTC--------C-GAAACAGAACCGGAAGAAAATCATTCTGGTGTTG 1308
Query 1297 ACTCAGACGGCACTATCTCTGAAGCTGATTCGAACCAAGCCGTATTGGGATCTGAGACTG 1356
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct 1309 ACTCAGACGGCACTATCTCTGAAGCTGATTCGAACCAAGCCGTAGTGGGATCTGATATTG 1368
Query 1357 CTGATGAAGAGATGACACTTTCGGAATCAGAAGGCTCTGCTGCTACTGCTCCAAATTCAC 1416
| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1369 CGGATGAAGAGATGACTCTTTCGGGATCAGAAGGCTCTGCTGCTACTGCTCCAAATTCAC 1428
Query 1417 CTCCTCTTCTTGAAGAGGCTAAAGTCATCAAAACAACTCCGGTATCTCCATTTGCAGCAG 1476
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1429 CTCCTCGTCTTGAAGAGGCTAAAGTCATCAAAACAACTCTGGTATCTCCATTTGCAGTAG 1488
Query 1477 AACCAATCTCAGTTCAGTTCCCAAGACCAAGCAAATCAACAACTCCATTAAAGAACTCGG 1536
|| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 AATCAATCTCAACTCAATTCCCAAGACCAAGCAAATCAACAACTCCATTAAAGAACTCGC 1548
Query 1537 CTCTGAAGCTGGTCAATGAGAACAAGGAGAACAACATGGAGGTGATGATGATGAACGTTA 1596
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1549 CTCTGAAGCTGGTCAATGAGAACAAGGAGAACAACATGGAGATGATGATGATGAATGTTA 1608
Query 1597 ACAACAATGAGAATGGAGAGAGCAAAGGCGAGGAAGGTAAGAAGAAGAAGAAGGTGACAA 1656
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1609 ACAACAATGAGAATGGAGAGAGCAAAGGCGAGGAGGGTAAGAAGAAGAAGAAGGTGACAA 1668
Query 1657 TCGATGAAGAGAACTTGAAAGTTGCGAGCGTGAGGCAACTG-AGAAAGATGGTGAAGGAA 1715
|||||||||||||||||||| | ||||| | ||||||||| |||| |||||||||||||
Sbjct 1669 TCGATGAAGAGAACTTGAAAAATACGAGCATAAGGCAACTGGAGAA-GATGGTGAAGGAA 1727
Query 1716 CTCTCAATAAAAAGCAGTAACAGAACTGCGTTGCAGATATTGCCTGGGAATAATCAGACT 1775
|| || ||||| | |||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1728 CTTTCTATAAAGACCAGTAACAGAACTGCGTTGCAGGTATTGCCTGGGAATAATAAGACT 1787
Query 1776 GCAGAGTAGAGAGTGTGAGC-CAAATGTGCtttgtttttcttttgttgttgttcttgttg 1834
||||||||| ||| | || | |||||||||||||| |||||||||||||| |||||||||
Sbjct 1788 GCAGAGTAGCGAGGGAGA-CTCAAATGTGCTTTGTCTTTCTTTTGTTGTTCTTCTTGTTG 1846
Query 1835 tCTCAGACAGATaaaaaaaaa 1855
||||||||||||||| |||||
Sbjct 1847 TCTCAGACAGATAAACAAAAA 1867
Score = 87.9 bits (47), Expect = 3e-16
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1898 CAATCTGTTGATTTCATTACAAAATAATAAGCTCAAAATACTCTTTTAAGTTC 1950
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1936 CAATGTGTTGATTTTATTACAAAATAATAAGCTCAAAATACTCTTTTAAGTTC 1988
> AT3G03130.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G17160.1);
Has 7130 Blast hits to 3690 proteins in 504 species: Archae
- 22; Bacteria - 2666; Metazoa - 1654; Fungi - 721; Plants
- 246; Viruses - 56; Other Eukaryotes - 1765 (source: NCBI
BLink). | chr3:721291-723646 REVERSE LENGTH=1793
Length=1793
Score = 202 bits (109), Expect = 1e-50
Identities = 262/333 (79%), Gaps = 22/333 (7%)
Strand=Plus/Plus
Query 78 ATGGATTTCCACAGCCTT-TTGAGAAGAGATCTTCAATTTCTCTGCAAGAGGAACAAAAT 136
|||||||||||||| ||| | ||||||||||||||||| |||| ||||||||||||||
Sbjct 83 ATGGATTTCCACAGTCTTCCT-CGAAGAGATCTTCAATTTTTCTGTAAGAGGAACAAAAT 141
Query 137 CCCAGCCAATATGACCAACCTTGCCATGGCCGATGCTCTCAAATCTCTTGAGATTGTTGA 196
|||||||||||||||||| ||||||||||||||||||||| | |||||||||||| ||
Sbjct 142 CCCAGCCAATATGACCAATATTGCCATGGCCGATGCTCTCAGAGATCTTGAGATTGTGGA 201
Query 197 TGGTCTTGATGAATACATGAATCAATC-CGA-ATCCAATGCTC-AGC-AGTCTC-CAACC 251
||| | ||||| | |||| ||| ||| || | ||| | ||| | | ||| | |||
Sbjct 202 AGGTATGGATGAGTTCATGGATCCATCTCGTGA-CCAGT-CTCCAACCAGTGTTGCAAGA 259
Query 252 AGTGTAGCAAAGCTGCCAC-CAAATACTGCAGCTAGAACAACTCGAAGAAAGACCACAAC 310
| | | || ||| ||| | | || |||| ||||||||||||||||| ||| |||| |
Sbjct 260 AATTT-GCCAAG-TGCTGCTCGAA--CTGCTGCTAGAACAACTCGAAGGAAGTCCAC--C 313
Query 311 AAAAGCTGAGCCTCAGTCATCATCTCAGTTGGTGTCCCGTTCTTGTCGTGCGACGAGCAA 370
|| | ||| ||||||||||| | |||||| ||||||||||| || | ||||||
Sbjct 314 AAG-GATGAAACTCAGTCATCAGA--A-TTGGTGACCCGTTCTTGTTATGTGGTGAGCAA 369
Query 371 GTCTCTT-GCTGGAGAAATGGACCAGGATAACA 402
||| ||| |||||||||||||| || || ||||
Sbjct 370 GTC-CTTAGCTGGAGAAATGGATCAAGAAAACA 401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96636049125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5