BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488578
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17170.1 | Symbols: ENH1 | rubredoxin family protein | chr5:... 1600 0.0
> AT5G17170.1 | Symbols: ENH1 | rubredoxin family protein | chr5:5649193-5651158
FORWARD LENGTH=1141
Length=1141
Score = 1600 bits (866), Expect = 0.0
Identities = 1012/1078 (94%), Gaps = 28/1078 (3%)
Strand=Plus/Plus
Query 3 AAAACGCATGCAACAACATTGATTCAATTAAGAATCAATC-AAGCTTCTTCGTTCGATCA 61
||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct 72 AAAACGCATGCAACAACATCGA---AATTAAGAATCAATCAAAGCTTCTTCGTTCGATCA 128
Query 62 CACTAGaaaaaaaGAT-G----G-CTGGTGCGATTTCAGGAGCTACTGTCTCTTCCTTCT 115
||||||||| |||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 129 CACTAGAAAGAAAGATGGCAACGTCTGGTGCGATTTCAGGAGCTACTGTCTCTTCCTTCT 188
Query 116 TCACCAAAACTGCTTCTACTTCAAACCCATCTCCTAAACTCCACTACTCTGCTTCTCTGT 175
||||||||||| || ||||||||||||||||||| |||||||| | |||||||||||| |
Sbjct 189 TCACCAAAACTACTACTACTTCAAACCCATCTCCCAAACTCCATTCCTCTGCTTCTCT-T 247
Query 176 TT-TCACAGAAAACTGGGTTTCAGGGAGTTTCATTGGAAGATTCGAAGAAGAGTGTATCA 234
|| ||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||
Sbjct 248 TTATCACAGAAAACTGTGTTTCAAGGAGTTTCGTTGGAAGATTCGAAGAAGAGTGTATCA 307
Query 235 GAGATCTTCGTTGTCTCCAAGAGAAAGATTGGAGGGTTAAATGGGTTGAGAAGATTCGAA 294
|||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 308 GAGATCTTCGCTGTCTCCGAGAGAAAGATCGGAGGGTTAAATGGGTTGAGAAGATTCGAA 367
Query 295 ATCAAAGCGAGAGCAGCAGCTTCTAAAACAATAGAGGTTGAAGTAGACAAGCCTTTGGGT 354
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 368 ATCAAAGCGAGAGCAGCAGCTTCTAAGACAATAGAGGTTGAAGTAGATAAGCCTTTGGGT 427
Query 355 CTGACTCTAGGACAGAAGCCAGGCGGTGGAGTTGTCATCACCGGTGTGGACGGAGGTGGG 414
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 428 CTGACTCTAGGACAGAAGCAAGGCGGTGGAGTTGTCATCACCGGTGTGGACGGAGGAGGG 487
Query 415 AACGCAGCAAAAGCAGGGCTTAAATCTGGAGATCAAGTGGTGTACACAAGCAGCTTCTTT 474
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 488 AACGCAGCAAAAGCAGGGCTTAAATCTGGAGATCAAGTTGTGTACACAAGCAGTTTCTTT 547
Query 475 GGAGATGAGCTTTGGCCTGCAGATAAGCTTGGCTTTACTAAAACCGCTATTCAGGCCAAA 534
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 548 GGAGATGAGCTTTGGCCTGCAGATAAGCTTGGCTTTACTAAAACTGCAATTCAGGCAAAA 607
Query 535 CCTGATTCTGTCTACTTTGTTGTTAGCAGAGGTGCAGAAGTTGATGTCAAGAAACTAAAT 594
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 608 CCTGATTCTGTCTACTTTGTTGTTAGCAGAGGTGCAGAAGTTGATGTTAAGAAACTAAAT 667
Query 595 AAGCGTCCAGCTCCTCCACGGTTTGGAAGGAAGTTAACTGAGACTCAGAAGGCAAGTA-C 653
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 668 AAGCGTCCGGCTCCTCCACGGTTTGGAAGGAAGTTAACTGAGACTCAGAAGGCAAG-AGC 726
Query 654 TACTCACATTTGTCTTGATTGTGGATTCATATACACTTTACCCAAATCTTTTGATGAACA 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 727 TACTCACATTTGTCTTGATTGTGGATTCATATACACTTTACCCAAATCTTTTGACGAACA 786
Query 714 GCCGGATACATACGTATGTCCTCAATGTATAGCACCAAAGAAGAGGTTTGCGAAGTATGA 773
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 787 GCCGGATACATACGTATGTCCTCAATGTATAGCACCAAAGAAGAGGTTTGCAAAGTATGA 846
Query 774 CGTGAACACAGGAAAGGCCATTGGAGGAGGATTGCCTCCAATTGGTGTCATTGTTGGCTT 833
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 847 CGTGAACACAGGAAAGGCCATAGGAGGAGGATTGCCTCCAATTGGTGTCATTGTTGGCTT 906
Query 834 ATTGGCCGGTCTTGGAGCTGTCGGAGCTTTGCTAGTCTATGGTCTTCAATAGATTTT-CT 892
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||
Sbjct 907 ATTGGCCGGTCTTGGAGCTGTTGGAGCTTTGCTTGTCTATGGTCTTCAATAAATTTTTCT 966
Query 893 -AAACACTTTTATAATCTCTATAAAACAAGTCCTTATTTGAGCTTTGTAATTGTAAACCA 951
||| |||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 967 TAAA-ACTTTTATAATCTCTATAAAACAAGTCC------G--CTTTGTAATTGCAAACCA 1017
Query 952 AGAATGAATGTTGATGACATCAACTTGGGAGTTAAACTATTGTAAAGCATTTTTTGATTC 1011
||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||
Sbjct 1018 AGAATGAATGTTGATGACATCAACTTGAGAGTTAAATTAT-GTAAAGCATTTTTCGATTC 1076
Query 1012 TCTCCTTCTTATGTAACT-TTGGTTCTCTCTATAGTCAAATTAGTGCAGCAGCAAGAG 1068
|||||||||||||||||| ||| || ||||| || ||||| |||||||||||||||||
Sbjct 1077 TCTCCTTCTTATGTAACTCTTGTTT-TCTCTGTAATCAAACTAGTGCAGCAGCAAGAG 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5