BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488580 Length=269 Score E Sequences producing significant alignments: (Bits) Value AT5G17180.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 383 5e-106 > AT5G17180.1 | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5651436-5651807 FORWARD LENGTH=372 Length=372 Score = 383 bits (207), Expect = 5e-106 Identities = 250/270 (93%), Gaps = 5/270 (2%) Strand=Plus/Plus Query 1 ATGGCCAACGCAAAAGACGTGAAAGAGTTCAAAGAAAC-TTTCAAGAGATTTGATCAATA 59 ||||| |||||||||||||||||||| ||||||||||| |||| |||||||||||||||| Sbjct 1 ATGGCTAACGCAAAAGACGTGAAAGACTTCAAAGAAACTTTTC-AGAGATTTGATCAATA 59 Query 60 CGTAAACGGAGAGATTCCATGGAGGGAATTTGACATGTCTGGCGTACGCAAACGTTCTAC 119 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 60 TGTAAACGGAGAGATTCCATGGAGGGAATTTGACATGACTGGCGTACGCAAACGTTCTAC 119 Query 120 TCCAATGACAAAGTCTGAAATCGACAAAATATTCGTAGAGCTTGGAACTCGTGGTGAAGA 179 ||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 120 TCCAATGACCAAGTCTGAAATCGACACAATATTTGTAGAGCTTGGAACTCGTGGTGAAGA 179 Query 180 TAGAGTCTTCAGAGCTTCCAAGTTTTCCGGTAATCCTCTTCATCCAACATCTGTCTCAGT 239 ||||||||| |||| ||||||||||||||||||||||||||| | | |||||||| | Sbjct 180 TAGAGTCTTTAGAGATTCCAAGTTTTCCGGTAATCCTCTTCA---AGCTTCTGTCTCTCT 236 Query 240 TAAACCTAAACCTAAAGATGTGATTAATGT 269 ||||| ||| |||||||||||||||||||| Sbjct 237 TAAACATAAGCCTAAAGATGTGATTAATGT 266 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12315598505 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5