BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488580

Length=269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G17180.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   383    5e-106


> AT5G17180.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:5651436-5651807 
FORWARD LENGTH=372
Length=372

 Score =  383 bits (207),  Expect = 5e-106
 Identities = 250/270 (93%), Gaps = 5/270 (2%)
 Strand=Plus/Plus

Query  1    ATGGCCAACGCAAAAGACGTGAAAGAGTTCAAAGAAAC-TTTCAAGAGATTTGATCAATA  59
            ||||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||
Sbjct  1    ATGGCTAACGCAAAAGACGTGAAAGACTTCAAAGAAACTTTTC-AGAGATTTGATCAATA  59

Query  60   CGTAAACGGAGAGATTCCATGGAGGGAATTTGACATGTCTGGCGTACGCAAACGTTCTAC  119
             |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  60   TGTAAACGGAGAGATTCCATGGAGGGAATTTGACATGACTGGCGTACGCAAACGTTCTAC  119

Query  120  TCCAATGACAAAGTCTGAAATCGACAAAATATTCGTAGAGCTTGGAACTCGTGGTGAAGA  179
            ||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct  120  TCCAATGACCAAGTCTGAAATCGACACAATATTTGTAGAGCTTGGAACTCGTGGTGAAGA  179

Query  180  TAGAGTCTTCAGAGCTTCCAAGTTTTCCGGTAATCCTCTTCATCCAACATCTGTCTCAGT  239
            ||||||||| |||| |||||||||||||||||||||||||||   | | ||||||||  |
Sbjct  180  TAGAGTCTTTAGAGATTCCAAGTTTTCCGGTAATCCTCTTCA---AGCTTCTGTCTCTCT  236

Query  240  TAAACCTAAACCTAAAGATGTGATTAATGT  269
            ||||| ||| ||||||||||||||||||||
Sbjct  237  TAAACATAAGCCTAAAGATGTGATTAATGT  266



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12315598505


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5