BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488581
Length=724
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17190.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 846 0.0
> AT5G17190.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: intracellular protein transport; LOCATED
IN: endomembrane system, integral to membrane, endoplasmic
reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING:
13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated
31-like (InterPro:IPR008417); BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G03160.1);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants
- 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:5652218-5652983 FORWARD LENGTH=766
Length=766
Score = 846 bits (458), Expect = 0.0
Identities = 502/523 (96%), Gaps = 4/523 (1%)
Strand=Plus/Plus
Query 3 AAAGATCTAAAACTTGTTCACTAAG-aaaaa--aaaaTCACAATCAGAGCACCAAAACCG 59
||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 8 AAAGATCTAAAACTTGTTCACTAAGAAAAAATCAAAATCA-AATCAGAGCACCAAAACCG 66
Query 60 ACTCAGATCTAGATCGCAATTCTCCAATGGCTCTCGAATGGGTTGTGTTAGGTTACGCAG 119
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 67 ACTCAGATCTAGATCGGATTTCTCCAATGGCTCTCGAATGGGTTGTGTTAGGTTACGCAG 126
Query 120 CAGCAGCTGAAGCAATCATGGTGATTCTCTTGACGATGCCTGGACTCGACGCTCTCCGCA 179
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 127 CAGCAGCTGAAGCGATCATGGTGATTCTCTTGACGATGCCTGGACTTGACGCTCTCCGCA 186
Query 180 AAGGATTAGTCGCTGTGACTCGTAATCTCTTGAAGCCGTTTCTCTCGATAATTCCGTTTT 239
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 187 AAGGATTAGTCGCTGTAACTCGTAATCTCTTGAAACCGTTTCTCTCGATAATCCCGTTTT 246
Query 240 GTCTCTTCCTTCTTATGGATATCTATTGGAAGTACGAGACTCGACCTTCTTGTGATAGTG 299
|||||||||||||||||||||| || |||||||| ||||||||||||||||| ||| |||
Sbjct 247 GTCTCTTCCTTCTTATGGATATTTACTGGAAGTATGAGACTCGACCTTCTTGCGATGGTG 306
Query 300 ATTCGTGTACTCCTTCTGAGCATCTTCGTCACCAGAAATCGATCATGAAGTCTCAGCGTA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 ATTCGTGTACTCCTTCTGAGCATCTTCGTCACCAGAAATCGATCATGAAGTCTCAGCGTA 366
Query 360 ACGCGCTTCTGATCGCGTCGGCTCTTGTTTTCTACTGGATTTTGTACTCTGTCACGAATT 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ACGCGCTTCTGATTGCGTCGGCTCTTGTTTTCTACTGGATTTTGTACTCTGTCACGAATT 426
Query 420 TGGTTGTGAGGATTGAGCAGCTTAATCAGAGGGTTGAGAGGCTCAAGAACAAGGATTAAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TGGTTGTGAGGATTGAGCAGCTTAATCAGAGGGTTGAGAGGCTCAAGAACAAGGATTAAG 486
Query 480 TAAGAGCCTGCTGCTTCGTCTCTCGTCGTCCTCAGGTCCTTTA 522
||||| || ||||||||||| |||||| |||||||||||||||
Sbjct 487 TAAGATCCAGCTGCTTCGTCCCTCGTCTTCCTCAGGTCCTTTA 529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35113668753
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5