BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488583
Length=925
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17210.1 | Symbols: | Protein of unknown function (DUF1218)... 1314 0.0
> AT5G17210.1 | Symbols: | Protein of unknown function (DUF1218)
| chr5:5656383-5658147 FORWARD LENGTH=943
Length=943
Score = 1314 bits (711), Expect = 0.0
Identities = 867/938 (92%), Gaps = 27/938 (3%)
Strand=Plus/Plus
Query 1 AAAAGCGAGTGCGGTGTTTAATGATGGGTTTGTCACCAACTTTACATTTTCTTACCAACG 60
||||| ||||||||||||| | |||||||||||||||||||| ||||||||||||||||
Sbjct 1 AAAAGTGAGTGCGGTGTTT-A--ATGGGTTTGTCACCAACTTTCCATTTTCTTACCAACG 57
Query 61 AAGAAGAAGC-CaaaaaaagcaaacaataaaataaaaaaaaaaaGTCAGCATCTTTGGAG 119
|||||||||| |||||||| |||||| | | ||||||||||||| ||||||||| ||||
Sbjct 58 AAGAAGAAGCAGAAAAAAAGTAAACAA-AGACTAAAAAAAAAAAGCCAGCATCTTCGGAG 116
Query 120 -T--T-GGA-AGTGAGAGAGATGGAGAGGAGGAAGGTTGTGATGTGTGGTGTTTTATTTC 174
| | ||| || || ||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 117 TTGGTGGGAGAGAGACAGAGATGGAGAGGAGAAAGATTGTGATGTGTGGTGTTTTATTTC 176
Query 175 TTCTTGGTTTATTATCAGCTGTTACTGCCTTCGCCGCTGAAGCTACTCGAATCAAGAGAT 234
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 177 TTCTTGGTTTATTATCAGCTGTTACTGCCTTCGTCGCTGAAGCTACTCGAATCAAGAGAT 236
Query 235 CTCAGGTCAAGGTTACTGTTTCGGATTCAATaaaaaaaTGCACTTATCCAAGAAGTCCAG 294
||||||||| |||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 237 CTCAGGTCACGGTTACCGTTTCGGATTCAATCACAAAATGCACTTATCCAAGAAGTCCAG 296
Query 295 CTTTTGATCTCGGCTTCACTTCAGCTCTCTTTCTGATGATGGCTCAGATCATAGTCAGCG 354
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 297 CTTTCAATCTCGGCTTCACTTCAGCTCTCTTTCTGATGATGGCTCAGATAATAGTCAGTG 356
Query 355 TCTCAAGCGGTTGTTTCTGTTGTAGAAAAGGTCCTGCTCCTTCGAGGTCTAATTGGATTA 414
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 357 TCTCAAGCGGTTGTTTCTGTTGTAGAAAAGGTCCTGCTCCTTCAAGGTCTAATTGGATTA 416
Query 415 TCTCCTTAATCTGCTTTGTTGTTTCCTGGTTCACTTTTGTAATAGCTTTCCTCGTGCTGC 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TCTCCTTAATCTGCTTTGTTGTTTCCTGGTTCACTTTTGTAATAGCTTTCCTCGTGCTGC 476
Query 475 TTACTGGAGCTGCACTCAACGATGAACACACCGAGGAATCAATGAATGCTGGTACCTACT 534
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTTCTGGAGCTGCACTCAACGATGAACACACCGAGGAATCAATGAATGCTGGTACCTACT 536
Query 535 TTTGCTACATAGTGAAACCAGGCGTTTTCTCTACCGGCGCTGTGCTTTCGCTTATTACTA 594
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 537 TTTGCTACATAGTGAAACCAGGCGTTTTCTCTACCGGTGCTGTGCTTTCGCTTGTTACTA 596
Query 595 TTGCCCTCGGGATTGTCTACTATTTGTGTTTGACTTCAAGTAAGCAAACTGTTGCTGTCA 654
||||||| ||||||||||||||||| ||||||||||||| |||||||| |||||||| ||
Sbjct 597 TTGCCCTTGGGATTGTCTACTATTTATGTTTGACTTCAAATAAGCAAATTGTTGCTGCCA 656
Query 655 CAACGACGGGGGCGAACCAAGGAACAGGAATAGCAATGGGGCAGCCTCAGATTCCAGAGA 714
||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CAACGAC-----C---C-AAGGAACAGGAATAGCAATGGGGCAGCCTCAGATTCCAGAGA 707
Query 715 GAGTAGAAGATCCCGTCTTTGTTCATGAGGATACTTACATGAGAAGACAGTTCACTTAAA 774
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GAGTAGAAGATCCTGTTTTTGTTCATGAGGATACTTACATGAGAAGACAGTTCACTTAAA 767
Query 775 AACAGACAAGGCTTGCTTGTAAAAACACTTTAGGTTTAGGAGAAGATTTAGACAAAAGGA 834
||||||||| ||||||||||||| ||| |||||||||| ||||||||||||||||| ||
Sbjct 768 AACAGACAAAGCTTGCTTGTAAAG-CACGTTAGGTTTAGTAGAAGATTTAGACAAAATGA 826
Query 835 TTAAAGGATTTGTGTTTGATTAAGAGTAT-GAAACTTTGTA-TGATT-T-ATT---GACT 887
|||| |||| ||||||||||||||||||| ||||||||||| ||||| | ||| || |
Sbjct 827 TTAACGGATATGTGTTTGATTAAGAGTATTGAAACTTTGTAATGATTGTTATTCTTGATT 886
Query 888 GAAGTGGAAATCCTTGAAAACCACAAAAACGTCACTTA 925
||||| |||||| |||| |||| |||||||||||||||
Sbjct 887 GAAGTAGAAATCTTTGAGAACCCCAAAAACGTCACTTA 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45210732300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5