BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488588
Length=1525
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17240.1 | Symbols: SDG40 | SET domain group 40 | chr5:56668... 2183 0.0
> AT5G17240.1 | Symbols: SDG40 | SET domain group 40 | chr5:5666852-5668907
FORWARD LENGTH=1536
Length=1536
Score = 2183 bits (1182), Expect = 0.0
Identities = 1392/1493 (93%), Gaps = 15/1493 (1%)
Strand=Plus/Plus
Query 11 TGGACTTAGAACACCAAACCATGGAAACGTTCCTGCGTTGGGCAGCAGAGATTGGCATTT 70
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 4 TGGACTTAGAACACCAAACCATGGAGACGTTCCTGCGATGGGCAGCAGAGATTGGCATTT 63
Query 71 CAGATTCCGTTGATTCTTCTCGATTTCGAGATTCGTGTCTCGGCCATTGC-CTTTCCGTC 129
||||||| ||||||||||||||||||| ||||||||||| || |||| | |||||||||
Sbjct 64 CAGATTCTATTGATTCTTCTCGATTTCGCGATTCGTGTCTTGGACATT-CTCTTTCCGTC 122
Query 130 GCCGACTTCCCTCACGCCGGCGGGAGAGGTTTGGGAGCTGTTCGTGAGCTCAAGAAAGGA 189
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 123 TCCGACTTCCCTGACGCCGGCGGGAGAGGTTTGGGAGCTGCTCGTGAGCTCAAGAAAGGA 182
Query 190 GAATTGGTTTTGAAAGTCCCCAGAAACGCATTGATGACTACAGAATCTATGATCGCTAAA 249
|||||||||||||||||||||||||| || ||||||||||||||||| || || ||||||
Sbjct 183 GAATTGGTTTTGAAAGTCCCCAGAAAAGCCTTGATGACTACAGAATCCATAATTGCTAAA 242
Query 250 GATCGGAAATTGAATGATGCCGTTAATCTCCATGGA-TCACTCTCTTCGACTCAGATTCT 308
|||| ||||||| ||||| |||||||| || | ||||| |||||||||||||| ||
Sbjct 243 GATCTAAAATTGAGCGATGCTGTTAATCTTCA-CAATTCACTTTCTTCGACTCAGATACT 301
Query 309 GAGTGTATGCTTATTGTATGAAATGGGCAAGGGGAAG-AGTTCCTTTTGGTATCCATACT 367
||||||||||||||||||||||||| |||||| |||| || || ||||||||||||||||
Sbjct 302 GAGTGTATGCTTATTGTATGAAATGAGCAAGGAGAAGAAG-TCTTTTTGGTATCCATACT 360
Query 368 TGGTGCATTTACCTCGTGACTATGATCTCTTGGCCACATTTGGGGAA-TTCGAGAAGCAA 426
|| | ||| ||||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 361 TGTTCCATATACCTCGTGACTATGATCTCTTGGCTACATTT-GGGAATTTCGAGAAGCAA 419
Query 427 GCTTTACAAGTTGAAGATGCTGTTTGGGCTACAGAAAAAGCCATAGCCAAGTGTCAGTTT 486
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 420 GCTTTACAAGTTGAAGATGCTGTTTGGGCTACAGAAAAAGCCACAGCCAAGTGTCAGTCT 479
Query 487 GAGTGGAAGGAAGTTGGTTTATTGATGGAGGAGTTAGAGCTTAAGTCAAAGTTTCGGAGT 546
|||||||| |||| ||||| || ||| ||||||||||||| ||| | ||||||||||||
Sbjct 480 GAGTGGAAAGAAGCTGGTTCGTTAATGAAGGAGTTAGAGCTGAAGCCTAAGTTTCGGAGT 539
Query 547 TTCCAAGCATGGCTCTGGGCTTCTGCAACGATATCTTCGCGGACACTGCACGTACCATGG 606
|||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 540 TTCCAAGCATGGCTATGGGCTTCTGCAACGATATCTTCACGAACACTGCATGTACCATGG 599
Query 607 GATAGTGCTGGGAGTTTGTGTCCTGTAGGGGACTTGTTCAACTACGATGCTCCTGGAGAT 666
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GATAGTGCTGGGTGTTTGTGTCCTGTAGGGGACTTGTTCAACTACGATGCTCCTGGAGAT 659
Query 667 GATTTGCATACCCTAGAAGGTCCTGAGAGTGCTAATGATGTAGAGGAAGCAGGACTTGTT 726
||| | |||||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 TATTCGAATACCCCACAAGGTCCTGAGAGTGCTAATAATGTAGAGGAAGCAGGACTTGTT 719
Query 727 GTTGAGACACACTCTGAAAGGCTCACAGATGGTGGATTCGAGGAAGATGTCAATGCTTAT 786
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTTGAGACACACTCTGAAAGGCTCACAGATGGTGGATTCGAGGAAGATGTCAATGCTTAC 779
Query 787 TGTCTTTATGCAAGAAGGAATTATCAGCTAGGAGAACAGGTTCTTCTATGTTATGGGACT 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGTCTTTATGCAAGAAGGAATTATCAGCTAGGAGAACAGGTTCTTCTATGTTATGGGACT 839
Query 847 TACACAAATCTAGAGCTTCTCGAGCACTATGGGTTTATGTTAGAAGAGAACTCAAATGAC 906
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 840 TACACGAATCTAGAGCTTCTTGAGCACTATGGGTTTATGTTAGAAGAGAACTCAAATGAC 899
Query 907 AAGGTCTTCATTCCTCTAGAAACCAGTCTTTTTTCACTAGCTTCTTCATGGCCTAAAGAT 966
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 900 AAGGTCTTCATTCCTCTAGAAACCAGCCTATTTTCTCTAGCTTCTTCATGGCCTAAAGAT 959
Query 967 TCCTTATACATTCATCAAGATGGTAAGCCGTCTTTTGCGCTTG-TATCGACGTTGAGACT 1025
|| ||||||||||||||||| ||||||| |||||||||||| | |||| |||||||||||
Sbjct 960 TCTTTATACATTCATCAAGACGGTAAGCTGTCTTTTGCGCT-GATATCCACGTTGAGACT 1018
Query 1026 GTGGCTGATCCCACAGAGCCAGCGTGACAAGTCAGTTATGCGCCTTGTTTACGCTGGAAC 1085
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1019 GTGGCTGATCCCACAGAGCCAGCGTGACAAGTCAGTTATGCGCCTTGTTTACGCTGGATC 1078
Query 1086 TCAGATATCTGTGAAGAATGAGATTCTAGTCATGAAGTGGATATCAGAGAAATGTGGAAG 1145
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1079 TCAGATATCTGTGAAGAATGAGATTCTTGTCATGAAGTGGATGTCAGAGAAATGTGGAAG 1138
Query 1146 TGT---AAGGGATCTGCCAACTTCTGTC-CTAGAAGACACTCTGCTTCTTCATAACATTG 1201
||| |||||||||||||||||||||| | ||| |||||| ||||||||||||||||||
Sbjct 1139 TGTTTTAAGGGATCTGCCAACTTCTGTCAC-AGAGGACACTGTGCTTCTTCATAACATTG 1197
Query 1202 ACAAACTCCAAGATCCAGAATTGCGTTTGGAGCAGAAAGAAACAGAAGCTTTTGGCAGTG 1261
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1198 ACAAACTCCAAGATCCAGAATTGCGTTTGGAGCAGAAAGAAACAGAAGCTTTTGGCAGCG 1257
Query 1262 AAGTATGCGCTTTTCTCGATGCAAATCGTTTGAGGGATGTCACTGGATTTTCTGGGAAAC 1321
||||| | |||||||| ||||||||| ||||| |||||||||||| ||| ||||||||||
Sbjct 1258 AAGTACGTGCTTTTCTTGATGCAAATTGTTTGTGGGATGTCACTGTATTATCTGGGAAAC 1317
Query 1322 CTGTAGAATTTTCCAGGAAAACTAGCAGGATGCTGAGCAAATGGAGGTTGTCTGTGCTGT 1381
|| ||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 1318 CTATAGAATTTTCCAGGAAAACTAGCAGGATGCTGAGCAAATGGAGATGGTCTGTGCAGT 1377
Query 1382 GGAGGCTAAGCTACAAGAGAACTCTTGCAGATTGCATCTCTTATTGTAGTGAGAAAATGA 1441
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1378 GGAGGCTAAGCTACAAGAGAACTCTAGCAGATTGCATCTCTTATTGTAATGAGAAAATGA 1437
Query 1442 ATAATCTCTCATGTACCCAAGATAGGCTTAGAGATTTGTAACGTGAATCGAAA 1494
||||||||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1438 ATAATCTCTTAGGTACCCAAGATAGGCTTAGAGATTTGTAACTTGAATCGAAA 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75250616955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5