BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488590
Length=1430
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17260.1 | Symbols: anac086, NAC086 | NAC domain containing ... 2115 0.0
AT3G03200.1 | Symbols: anac045, NAC045 | NAC domain containing ... 518 7e-146
> AT5G17260.1 | Symbols: anac086, NAC086 | NAC domain containing
protein 86 | chr5:5675323-5677912 REVERSE LENGTH=1431
Length=1431
Score = 2115 bits (1145), Expect = 0.0
Identities = 1340/1435 (93%), Gaps = 10/1435 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCCGGTCTCATTGCCTCCAGGTTTTAGGTTCCATCCAACGGACGAAGAACTAATC 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCCGGTCTCGTTGCCTCCAGGTTTTAGGTTCCATCCAACGGACGAAGAACTAATC 60
Query 61 ACTTACTATCTCAAGAGAAAGATCAACGGTCAAGAGATCGAGCTAGAAATTATCCCTGAA 120
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 61 ACTTACTATCTCAAGAGAAAGATCAACGGCCAAGAGATCGAGCTAGAGATTATCCCTGAA 120
Query 121 GTAGACCTCTACAAGTGCGAACCATGTAAATTGGCAGGGAAGTCATTGCTTCCTAGCAAA 180
|||||||||||||||||||||||||| | ||| ||||||||||| || |||||||||||
Sbjct 121 GTAGACCTCTACAAGTGCGAACCATGGGACTTGCCAGGGAAGTCACTGATTCCTAGCAAA 180
Query 181 GACCAAGAATGGTACTTCTTCAGCCCACGGGACAGAAAATACCCCAATGGTTCAAGGACG 240
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 GACCAAGAATGGTTCTTCTTCAGCCCACGGGACAGAAAGTACCCCAATGGTTCAAGGACA 240
Query 241 AACCGGGCAACAAAAGGCGGTTACTGGAAAGCCACGGGCAAAGACCGGCGTGTGAGTTGG 300
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 241 AACCGGGCAACAAAAGGCGGTTATTGGAAAGCCACAGGCAAAGACCGGCGGGTGAGTTGG 300
Query 301 AGAGATCGAGCCATTGGGACCAAGAAAACATTAGTTTACTACCGTGGACGTGCCCCACAT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 AGAGATCGAGCCATTGGGACCAAGAAAACATTAGTTTACTACCGTGGACGTGCCCCGCAT 360
Query 361 GGTATTAGAACTGGTTGGGTCATGCATGAATATCGCCTCGATGAAACTGAATGCGTGCCT 420
||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct 361 GGTATTAGAACTGGTTGGGTCATGCATGAATATCGCCTCGATGAATCCGAATGCGAGCCT 420
Query 421 TCTGCATTTGGAATGCAGGACGCATATGCACTTTGTCGCGTGTTTAAGAAAATAGTGATT 480
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 TCTGCATTTGGCATGCAGGACGCATATGCACTCTGTCGCGTGTTTAAGAAAATAGTGATT 480
Query 481 GAGGCGAAACCAAGGGATCAACATCAGCAGCAGCATCAACCTTACGTCCACACGAGCTCG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAGGCGAAACCAAGGGATCAACATCAGCAGCAGCATCAACCTTACGTCCACACGAGCTCG 540
Query 541 AATATAAGCGGTAGCTCGAGTTTTGACGTTTGTTCAGATCTTGAAATAAGTTCAAACGCA 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 AATATAAGTGGTAGCTCGAGTTTTGACGTTTGTTCAGATCTTGAAATAAGTTCAAACACA 600
Query 601 CCTTATAATAGCGCTGCCGATATCCAATCACGATTTGGAAACGCAAACGCAATCACTGAT 660
|||||||||| ||||||| |||||||| | ||||||||||||||||||||||| | ||||
Sbjct 601 CCTTATAATACCGCTGCCCATATCCAACCGCGATTTGGAAACGCAAACGCAATTAGTGAT 660
Query 661 CATGATGACTGGTCGCAGTACTTGTCACAAAACATGCCTACGAGCTTTGCAGATTATGGA 720
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct 661 CATGATGACTGGTCGCAGTACTTGTCACAAAACATGCCTACAAGCTTTTCAGATTACGGA 720
Query 721 TCTCCTTATGGACCTTCCCTCACACAATCAAAGGTGAATACAGAAATGGAATGTGAGATG 780
|||||||||||||| | |||||| ||||||||||||||||||||| || |||||||||||
Sbjct 721 TCTCCTTATGGACCATACCTCACTCAATCAAAGGTGAATACAGAAGTGCAATGTGAGATG 780
Query 781 TTGCAACATCAAATGTCACTGCCACCATTGCGAGTAGAAAATTCGCCGGCTCAAACCAGG 840
|| ||||| ||||||||| |||||||||||||||||||||| |||| ||||||||||||
Sbjct 781 TTTCAACACCAAATGTCATTGCCACCATTGCGAGTAGAAAACTCGCAGGCTCAAACCAGC 840
Query 841 GATTTCTCCAAGAGAATGA-ATCAAAACAGTGGTCAAAGCGGTTTCGACGACTTTACTTT 899
||||||||||||||| | | ||||||||||||||||||| || |||||||||||||||||
Sbjct 841 GATTTCTCCAAGAGACT-ACATCAAAACAGTGGTCAAAGTGGGTTCGACGACTTTACTTT 899
Query 900 CGCCGCAAGTAACTCCAACCAATTCTATAACAATAACGTTGATGATCATTTAATACACAT 959
||| ||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||
Sbjct 900 CGCTGCAAGTAACTCCAACCAATTCTACAACAGCAACGTTGATGATCATTTGATACACAT 959
Query 960 TGGAGATCTCGATGTTGGAAATTCTTTTCTAGAAGAAGAAGA---GATTTTGCCAAGTTT 1016
|||| |||| || | | | | | | | |||||||| |||| |||||||||||||||
Sbjct 960 TGGAAATCTTGACGA-GCAGAGT-TATA-TAGAAGAACAAGAATTGATTTTGCCAAGTTT 1016
Query 1017 TGAGAGTAACGATCAAGATCTTGAATTTTATGGTGGATCACGGACCAATACAATCA-ACA 1075
||||||| ||||||||||||||| ||||||| ||||| |||||||||||||| | |||
Sbjct 1017 CCAGAGTAATGATCAAGATCTTGAACTTTATGGCGGATCTCGGACCAATACAAT-AGACA 1075
Query 1076 ACATAGAGATCGATGATTTTTTCTCGTTTGAGAACCAAGCACAAGACAACGACAACTCAA 1135
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 ACATAGAGATCGACGATTTTTTCTCGTTTGAGAACCAAGCACAAGACAACGACAACTCAA 1135
Query 1136 ACGTAACCCCAAACTCCGCAGGATTGGAAATGATTGGAGAAGAGATCATAGTAAACCATA 1195
|||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1136 ACGTAACCCCAAACTCGGCAGGATTCGAAATGATTGGAGAAGAGATTATAGTAAACCATA 1195
Query 1196 AAATGCTTATTAGTACACGGCAAACGACGGAGATTTTATACTACCAAGTCGTACCGTCGC 1255
||||||| |||||||||||||| || ||||||||||||||||| ||||| ||||||||||
Sbjct 1196 AAATGCTCATTAGTACACGGCAGACTACGGAGATTTTATACTATCAAGTGGTACCGTCGC 1255
Query 1256 AGATACTGAAAATTCACATAAATCCGGTACATGGAAATGAAGAGAGAACAATGTTAATGG 1315
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1256 AGATATTGAAAATTCACATAAATCCGGTTCATGGAAATGAAGAGAGAACAATGTTAATGG 1315
Query 1316 AAGAAGGCAGTGATGATTCTTGGTTCCAGAAGGCTGAAAATGTTGCGAAGTTGAAATTGA 1375
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1316 AAGAAGACAGTGATGATTCTTGGTTCCAGAAGGCTGAAAATGTTGCGAAGATGAAACTGA 1375
Query 1376 AGCAGATTAGTCTAGTTGCAAAACGTTATTACAAATGTCTCACAATTATTTTCTG 1430
| ||||||||| |||||||||||||||||||||||||||| || |||||||||||
Sbjct 1376 AACAGATTAGTTTAGTTGCAAAACGTTATTACAAATGTCTTACTATTATTTTCTG 1430
> AT3G03200.1 | Symbols: anac045, NAC045 | NAC domain containing
protein 45 | chr3:736141-738527 REVERSE LENGTH=1440
Length=1440
Score = 518 bits (280), Expect = 7e-146
Identities = 431/506 (85%), Gaps = 2/506 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCCGGTCTCATTGCCTCCAGGTTTTAGGTTCCATCCAACGGACGAAGAACTAATC 60
|||||||| ||||| || ||||||||||| | ||||||||||| ||||| ||||||||
Sbjct 1 ATGGCTCCTGTCTCGTTACCTCCAGGTTTCCGATTCCATCCAACAGACGAGGAACTAATT 60
Query 61 ACTTACTATCTCAAGAGAAAGATCAACGGTCAAGAGATCGAGCTAGAAATTATCCCTGAA 120
||||||||||| || |||||||||||||||| ||| ||||| || ||| ||||| |||||
Sbjct 61 ACTTACTATCTAAAAAGAAAGATCAACGGTCTAGAAATCGAACTTGAAGTTATCGCTGAA 120
Query 121 GTAGACCTCTACAAGTGCGAACCATGTAAATTGGCAGGGAAGTCATTGCTTCCTAGCAAA 180
|| || || |||||||| || ||||| | || |||||||||| |||||||| ||||||
Sbjct 121 GTTGATCTTTACAAGTGTGAGCCATGGGACTTACCAGGGAAGTCCTTGCTTCCGAGCAAA 180
Query 181 GACCAAGAATGGTACTTCTTCAGCCCACGGGACAGAAAATACCCCAATGGTTCAAGGACG 240
||||||||||||||||||||||||||||| ||| | || || ||||| || ||||||||
Sbjct 181 GACCAAGAATGGTACTTCTTCAGCCCACGAGACCGGAAGTATCCCAACGGCTCAAGGACA 240
Query 241 AACCGGGCAACAAAAGGCGGTTACTGGAAAGCCACGGGCAAAGACCGGCGTGTGAGTTGG 300
||||||||||| ||||||||||| ||||| || || || |||||||| || || ||||||
Sbjct 241 AACCGGGCAACTAAAGGCGGTTATTGGAAGGCTACAGGTAAAGACCGCCGAGTTAGTTGG 300
Query 301 AGAGATCGAGCCATTGGGACCAAGAAAACATTAGTTTACTACCGTGGACGTGCCCCACAT 360
||||| |||||||| || |||||||| ||||| |||||||||||||| || || ||||||
Sbjct 301 AGAGACCGAGCCATAGGAACCAAGAAGACATTGGTTTACTACCGTGGGCGCGCGCCACAT 360
Query 361 GGTATTAGAACTGGTTGGGTCATGCATGAATATCGCCTCGATGAAACTGAATGCGTGCCT 420
|| || |||||||||||||||||||| |||||||| || |||||||| ||||| | ||||
Sbjct 361 GGCATAAGAACTGGTTGGGTCATGCACGAATATCGACTTGATGAAACAGAATGTGAGCCT 420
Query 421 TCTGCATTTGGAATGCAGGACGCATATGCACTTTGTCGCGTGTTTAAGAAA-ATAGTGAT 479
||||||| || |||||||||||||||||||||||||| ||||| || ||| || || ||
Sbjct 421 TCTGCATACGGCATGCAGGACGCATATGCACTTTGTCGTGTGTTCAA-AAAGATTGTTAT 479
Query 480 TGAGGCGAAACCAAGGGATCAACATC 505
||| || || ||||| ||||||||||
Sbjct 480 TGAAGCTAAGCCAAGAGATCAACATC 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70481565180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5