BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488592

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G17280.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Oxidoredu...   616    1e-175


> AT5G17280.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Oxidoreductase-like, 
N-terminal (InterPro:IPR019180); Has 1807 Blast 
hits to 1807 proteins in 277 species: Archae - 0; Bacteria 
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; 
Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5686299-5686895 
FORWARD LENGTH=597
Length=597

 Score =  616 bits (333),  Expect = 1e-175
 Identities = 484/552 (88%), Gaps = 29/552 (5%)
 Strand=Plus/Plus

Query  1    AAAAAAGGAAATAG-----AAAAG-AGAGGCCAAATCTGTTTGATCTGTGCCTGTGCGTA  54
            ||||||||||||||     ||||| ||||  ||||||| |||||||||||| | || || 
Sbjct  4    AAAAAAGGAAATAGAAAAAAAAAGAAGAGAACAAATCTTTTTGATCTGTGCGTATG-GT-  61

Query  55   TGGTTGTTGTGTC-TCTTCATCGAATCTCGATCGCCACATCACCGGGTTCTAGCCTTCAC  113
            | |||| ||| || ||||| ||||||||||||||  ||||||||||||||||||||||||
Sbjct  62   T-GTTG-TGTCTCTTCTTCCTCGAATCTCGATCGTTACATCACCGGGTTCTAGCCTTCAC  119

Query  114  GATGTGCTTTTGAGCATGAGATTTGGATTGACGCGGCGACATCTCCCTTTGAAGCGACCT  173
            |||||||||||||||||||||||||| ||||||||   |||||||||| | || ||| ||
Sbjct  120  GATGTGCTTTTGAGCATGAGATTTGGTTTGACGCG---ACATCTCCCTCTCAAACGATCT  176

Query  174  TTCACCAATTATTCAATCACTTCCGTATCTCCAGAACAACAGCTCATATCGCCGGTGACC  233
            ||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct  177  TTCTCCAATTATTCAATCACTTCCGTATCTCCAGAACAACAGCTCAAATCTCCGGTGACC  236

Query  234  ATGGCGACGACCGAGAGCCAA-AATCTTGTACAAGCTTCCAAGGAGGAGACAAACAAGAA  292
            |||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct  237  ATGGCGACGACCGAGAGC-AAGAATCTTGTAGAAGCTTCCAAGGAGGAGACAAACAAGAA  295

Query  293  GGAGGTAGAGGATACGAAGGAGAT-----TTT-GGCTCCTCCGCCGCCGGAGAAACCAGA  346
            ||||  ||| |||| ||||||| |     ||| || |||||| ||||| |||||||||||
Sbjct  296  GGAGACAGAAGATAAGAAGGAGGTGGGAGTTTCGGTTCCTCCACCGCCAGAGAAACCAGA  355

Query  347  GCCTGGCGATTGCTGCGGTAGCGGTTGCGTCCGATGCGTTTGGGATGTTTATTACGAAGA  406
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  356  GCCTGGCGATTGTTGCGGTAGCGGTTGCGTCCGATGCGTTTGGGATGTTTATTACGATGA  415

Query  407  GCTCGAAGATTACAACAAGAAGCTTTCTGGAGAAACTAAATCCGTTTGACTTAATTGTCG  466
            ||||||||||||||||||| ||||||||||||||||||||||  ||||||| | || || 
Sbjct  416  GCTCGAAGATTACAACAAGCAGCTTTCTGGAGAAACTAAATCAATTTGACTGATTTTTC-  474

Query  467  CATTG--TTGTTGATGGAGAAATTAAACATTTGCCTCTTTGTCTATTTGATGATTCTGTG  524
            | | |  ||||| ||||||||||||||||||||  |||||||| |||||||||| | |||
Sbjct  475  C-TCGCATTGTTAATGGAGAAATTAAACATTTG--TCTTTGTCGATTTGATGATACAGTG  531

Query  525  CTTT-GTTGAAC  535
            |||| |||||||
Sbjct  532  CTTTTGTTGAAC  543



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26925502792


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5