BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488595
Length=1702
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17300.1 | Symbols: RVE1 | Homeodomain-like superfamily prot... 2065 0.0
> AT5G17300.1 | Symbols: RVE1 | Homeodomain-like superfamily protein
| chr5:5690227-5692902 REVERSE LENGTH=1839
Length=1839
Score = 2065 bits (1118), Expect = 0.0
Identities = 1343/1447 (93%), Gaps = 34/1447 (2%)
Strand=Plus/Plus
Query 282 TTTCCTTTTCTGCGTTCCAGACC-TTCGAGtttttttttGTTTTCCTCCGGCGAGATCTT 340
|||||||||||| |||||| ||| |||||||||||||||||||||||||| |||||||||
Sbjct 395 TTTCCTTTTCTGTGTTCCACACCTTTCGAGTTTTTTTTTGTTTTCCTCCGCCGAGATCTT 454
Query 341 TATCCGGGAAGTTATGACGTCGTCTACGTTGACTGCGAATGTTCA-GGT-CTGGTCTCCT 398
||||||||||||||| |||||||| |||||||||| |||||||| ||| | | ||
Sbjct 455 AATCCGGGAAGTTATGGCGTCGTCTCCGTTGACTGCAAATGTTCAGGGTAC-CAAC-GCT 512
Query 399 CCTTCGAGGAATAGAGATGAAGAAACTGCAGACAAGCAGATACAATTCAATGACCAAAGT 458
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 TCTTTGAGGAATAGAGATGAAGAAACTGCAGACAAGCAGATACAATTCAATGACCAAAGT 572
Query 459 TTTGGGGGAAATGACTATGCACCCAAGGTACGGAAACCATACACGATAACAAAAGAAAGA 518
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 573 TTTGGGGGAAATGACTATGCACCCAAGGTACGGAAGCCATACACGATAACAAAAGAGAGA 632
Query 519 GAGAGATGGACAGATGAAGAGCATAAGAAGTTTGTCGAAGCCTTGAAATTGTACGGGCGA 578
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 633 GAGAGATGGACAGATGAAGAGCACAAGAAGTTTGTTGAAGCCTTGAAATTATACGGGCGA 692
Query 579 GCATGGAGGCGAATAGAAGAACATGTGGGCTCAAAGACCGCAGTTCAGATTCGAAGCCAT 638
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 GCTTGGAGACGAATAGAAGAACATGTGGGCTCAAAGACCGCAGTTCAGATTCGAAGCCAT 752
Query 639 GCTCAGAAGTTTTTCTCTAAGGTTGCTCGAGAAGCAACTGGAGGTGATGGGAGCTCAGTA 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 GCTCAGAAGTTTTTCTCTAAGGTTGCTCGAGAAGCAACTGGAGGTGATGGGAGCTCAGTA 812
Query 699 GAGCCAATTGTGATACCGCCTCCTCGTCCCAAGAGAAAGCCAGCGCATCCTTACCCTCGT 758
||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 813 GAGCCGATTGTAATACCTCCTCCTCGTCCCAAGAGAAAGCCAGCGCATCCGTACCCTCGT 872
Query 759 AAGTTTGGGAACGAGGCAGATCAAACAAGTGGATCGGTTTCTCCCTCAGAACGTGACAAC 818
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 873 AAGTTTGGGAACGAGGCAGATCAAACAAGTAGATCGGTTTCTCCCTCAGAACGTGATA-C 931
Query 819 -CAATCTCCAACCTCTGTGTTGTCCACTCTTGGATCAGAAGCATTGGGTTCCCTTGATTC 877
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 932 TCAATCTCCAACCTCTGTGTTGTCCACTGTTGGATCAGAAGCATTGTGTTCCCTTGATTC 991
Query 878 GAGTTCACCCAATCGAAGCTTGTCCCCAGTATCTTCTGCATCACCACCAGCTGCTCTTAC 937
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 992 GAGTTCACCCAATCGAAGCTTGTCCCCAGTTTCTTCTGCATCACCACCAGCTGCTCTTAC 1051
Query 938 AACTACTGCAAATGCACCTGAAGAGCTTGAGACTCTGAAGCTGGAGTTGTTTCCAAGAGA 997
||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1052 AACCACTGCAAATGCACCTGAAGAGCTTGAGACTCTGAAGCTGGAGTTGTTTCCTAGTGA 1111
Query 998 GAGACTCTTAAATAGAGAGAGCTCAATCAAGGAACCAACGAAGCAAAGCCTTAAACTCTT 1057
|||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1112 GAGACTCTTAAACAGGGAGAGCTCGATCAAGGAACCAACGAAGCAAAGTCTTAAACTCTT 1171
Query 1058 TGGGAAGACAGTTTTGGTATCTGATTCAGGCATGTCCTCTTCTCTAACAACTTCAACTTA 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1172 TGGGAAGACAGTTTTGGTATCTGATTCAGGCATGTCCTCTTCTCTAACAACTTCAACATA 1231
Query 1118 TTGTAAATCCCCAATTCAGCCATTACCACGGAAACTCTCATCATCCAAAACATTACCAAT 1177
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 1232 TTGTAAATCCCCAATTCAGCCATTACCACGGAAACTCTCATCATCCAAGACACTACCCAT 1291
Query 1178 TATAAGAAACTCACAAGAAGAGCTCTTGAGTTGTTGGATACAAGTCCCTCTTAAGCAAGA 1237
|||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1292 AATAAGAAACTCACAAGAAGAACTCTTGAGCTGCTGGATACAAGTCCCTCTTAAGCAAGA 1351
Query 1238 AGATGTGGAAAATAGATGTTTAGATTCAGGAAAGGCTGTCCAAAACGAAGGATCATCGAC 1297
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1352 AGATGTGGAAAATAGATGTTTGGATTCAGGAAAGGCTGTCCAAAACGAAGGATCATCGAC 1411
Query 1298 TGGATCAAACACTGGTTCGGTGGATGATACGGGACACACTGACAAGACCTCAGAACCCGA 1357
||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 1412 TGGATCAAACACTGGTTCGGTGGATGATACGGGACACACGGAAAAGACCACAGAACCCGA 1471
Query 1358 AACAATGGTATGTCAATGGGAGTTTAAACCAAGCGAAAGGTCTGCATTTTCTGAGCTAAG 1417
||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 1472 AACAATGCTATGTCAATGGGAGTTTAAACCAAGTGAGAGGTCTGCATTTTCTGAGCTCAG 1531
Query 1418 AAGAACAAACTCCGAGTCAAATTCAAGAGGATTTGGTCCGTACaagaagagaaagatggt 1477
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1532 AAGAACAAACTCCGAGTCAAATTCAAGAGGATTTGGTCCATACAAGAAGAGAAAGATGGT 1591
Query 1478 aacagaagaagaagaagaa-gagaTTCGTCTCCACTTATAACACATTTTCTCAGGTACCC 1536
||||||||||||||| | | ||||||| ||||||||||||||||||||||| | ||||||
Sbjct 1592 AACAGAAGAAGAAGA-GCATGAGATTCATCTCCACTTATAACACATTTTCTTACGTACCC 1650
Query 1537 TAAAGAAGAGACCT-AAGtgtt-c-at-caat-g--tat-t---ttttg-t---tgttat 1581
|||||||||||| | || | || | || || | | | | | |||| | ||| ||
Sbjct 1651 TAAAGAAGAGACTTTAAAT-TTACTATTCATTCGACTTTCTAAGTTTTCATCAATGTAAT 1709
Query 1582 t---gttgttgtttcattgttttctcc-gaggggtttgttgtttAGGCTAAAATTTTCTG 1637
| |||||||||||||||||||||| |||| ||||||| | |||||||||||||||||
Sbjct 1710 TTTTGTTGTTGTTTCATTGTTTTCTCTTGAGGTGTTTGTTCTCTAGGCTAAAATTTTCTG 1769
Query 1638 CAAAA-TTTGTAACTGTAAAATTCGTGTACAAttttttttACAGTTAA-TCTAGTGATTA 1695
||||| ||||||||||||||| ||||||||||||| | |||||||| |||| ||||||
Sbjct 1770 CAAAAGTTTGTAACTGTAAAACTCGTGTACAATTTAT---ACAGTTAAATCTAATGATTA 1826
Query 1696 TGAGATC 1702
|||||||
Sbjct 1827 TGAGATC 1833
Score = 169 bits (91), Expect = 1e-40
Identities = 120/133 (90%), Gaps = 6/133 (5%)
Strand=Plus/Plus
Query 139 AAAGCTCCGTTTTGCTGGTAA---TTTTTTCCGGAAGGTGGAAGCTTTAGATTGGTTCTG 195
||| ||| | |||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct 207 AAATCTCTGGTTTGCTGG-AAGTTTTTTTTCCGGAAGGTGGAAGC-TTAGATTGGTTCTG 264
Query 196 ATTTCAGAAGCAAATCGTTTGTTTTTACCTAAATAAATCGAATCAATTTATGGGATCTAT 255
||||||||||||||||||||||| || ||||| |||| ||||||||||||||||||||||
Sbjct 265 ATTTCAGAAGCAAATCGTTTGTTGTTGCCTAAGTAAACCGAATCAATTTATGGGATCTAT 324
Query 256 AGAAACAGA-GGA 267
||||||||| |||
Sbjct 325 AGAAACAGACGGA 337
Score = 156 bits (84), Expect = 8e-37
Identities = 119/136 (88%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 1 TTCTCTCTGCTTTCTTCTTCCTCCGCCGAATCAGAAAGCTTGTCTTTTTCTTTACTCCGG 60
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 31 TTCTCTCTGTTTTCTTCTTCTTCCGCCGAATCAGAAAGCTTGTCTTTTTCTTTACTCCGG 90
Query 61 CGAGCATAG-TTCTCGGAGAATCTCTGAGAGTCTCATTTTCGACCTTCTTCTTATCTTTC 119
| | || | ||||||||| ||||||||||| |||||| |||||||||||||||| ||
Sbjct 91 CTACCAAAACTTCTCGGAGTTTCTCTGAGAGTTTCATTTCCGACCTTCTTCTTATCCTTA 150
Query 120 TCTGCAGCGAGAGTTT 135
| ||| || ||| |||
Sbjct 151 TTTGCGGCAAGA-TTT 165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84136113420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5