BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488599
Length=1744
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17330.1 | Symbols: GAD, GAD1 | glutamate decarboxylase | ch... 2739 0.0
AT1G65960.2 | Symbols: GAD2 | glutamate decarboxylase 2 | chr1:... 830 0.0
> AT5G17330.1 | Symbols: GAD, GAD1 | glutamate decarboxylase |
chr5:5711012-5715075 FORWARD LENGTH=1874
Length=1874
Score = 2739 bits (1483), Expect = 0.0
Identities = 1669/1757 (95%), Gaps = 20/1757 (1%)
Strand=Plus/Plus
Query 1 TTGATTATTGATATAAAACACC-TAT-AAGGTGTCTCTCTTCTTCCTCCATTATTCCCAt 58
||||||||||||||||||| || ||| |||||||||||| || |||||| ||||||||
Sbjct 1 TTGATTATTGATATAAAAC-CCATATAAAGGTGTCTCTCATCATCCTCC---ATTCCCAT 56
Query 59 tcatcactttcctcgatctcactttccctctctcatcatcatctcttggta---t-tctc 114
||||||||||||||||||||||||| |||||| ||||||||||| ||||| | ||||
Sbjct 57 ACATCACTTTCCTCGATCTCACTTTCTCTCTCTTATCATCATCTCCTGGTATTCTCTCTC 116
Query 115 tctcatcGCCGTGATGGTGCTCTCCCACGCCGCATCGGAGTCGGATGTCTCCGTCCACTC 174
||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 117 TCTCATCTCCGTGATGGTGCTCTCCCACGCCGTATCGGAGTCGGACGTCTCCGTCCACTC 176
Query 175 CACATTCGCATCACGTTACGTCCGTACTTCACTTCCTAGGTTCAAGATGCCTGAAAACTC 234
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 177 CACATTCGCATCACGTTACGTCCGTACTTCACTTCCTAGGTTCAAGATGCCGGAAAACTC 236
Query 235 GATACCGAAAGAAGCGGCGTATCAGATTATCAACGACGAGCTGATGCTTGACGGGAATCC 294
||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 237 GATTCCTAAGGAAGCGGCGTATCAGATCATCAACGACGAGCTGATGCTTGACGGGAATCC 296
Query 295 ACGCTTAAACTTGGCCT-CTTTCGTGACGACGTGGATGGAGCCTGAGTGTGATAAACTCA 353
||| || ||||| |||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 297 ACGGTTGAACTTAGCCTCCTTT-GTGACGACATGGATGGAGCCTGAGTGTGATAAACTCA 355
Query 354 TCATGTCCTCCATTAACAAGAACTATGTTGACATGGACGAGTACCCCGTCACCACCGAAC 413
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TCATGTCCTCCATCAACAAGAACTATGTTGACATGGACGAGTACCCCGTCACCACCGAAC 415
Query 414 TCCAGAATCGATGTGTGAACATGATTGCACATCTATTCAATGCACCGTTAGGAGAGACGG 473
| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 416 TTCAGAACCGATGTGTGAACATGATTGCACATCTATTCAATGCACCGTTAGAAGAGGCGG 475
Query 474 AGACAGCCGTCGGAGTGGGAACCGTTGGATCATCGGAGGCCATAATGTTGGCCGGTTTGG 533
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AGACCGCCGTCGGAGTAGGAACCGTTGGATCATCGGAGGCCATAATGTTGGCCGGTTTGG 535
Query 534 CCTTCAAGCGTAAATGGCAGAACAAGCGCAAAGCCGAAGGCAAACCCGTCGATAAACCCA 593
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 536 CCTTCAAGCGTAAATGGCAGAACAAGCGCAAAGCTGAAGGCAAACCCGTCGATAAACCCA 595
Query 594 ACATTGTCACCGGAGCCAATGTTCAAGTGTGTTGGGAGAAATTCGCTAGGTACTTTGAGG 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 ACATTGTCACCGGAGCCAATGTTCAAGTGTGTTGGGAGAAATTCGCTAGGTACTTTGAGG 655
Query 654 TTGAACTTAAGGAAGTGAAATTGAGTGAAGGATACTATGTGATGGACCCGCAAAAAGCTG 713
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 656 TTGAACTTAAGGAAGTGAAATTGAGTGAAGGATACTATGTGATGGACCCTCAACAAGCTG 715
Query 714 TTGATATGGTTGATGAGAACACTATTTGTGTTGCGGCCATTCTTGGTTCCACTCTTAATG 773
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 716 TTGATATGGTTGATGAGAACACCATTTGTGTTGCGGCCATTCTTGGTTCCACTCTTAATG 775
Query 774 GAGAATTTGAAGATGTCAAACTCTTGAACGATCTCTTGGTTGAAAAGAACAAAGAAACCG 833
||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 776 GAGAATTCGAAGATGTTAAACTCTTGAACGATCTCTTGGTCGAAAAGAACAAAGAAACCG 835
Query 834 GATGGGATACACCAATCCACGTGGATGCCGCAAGTGGAGGATTCATTGCACCGTTTTTGT 893
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 836 GATGGGATACACCAATCCACGTGGATGCGGCAAGTGGAGGATTCATTGCACCGTTTTTGT 895
Query 894 ATCCGGAACTGGAATGGGACTTTAGACTGCCATTGGTGAAGAGTATCAATGTGAGTGGTC 953
|||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 896 ATCCGGAATTGGAATGGGACTTTAGACTTCCCTTGGTGAAGAGTATCAATGTGAGTGGTC 955
Query 954 ACAAGTATGGACTTGTGTACGCAGGAATTGGTTGGGTGATTTGGAGAAACAAAGAGGATT 1013
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 956 ACAAGTATGGACTTGTGTACGCAGGGATTGGTTGGGTGATCTGGAGAAACAAAGAGGATT 1015
Query 1014 TGCCTGAGGAACTCATCTTCCATATCAATTATCTTGGTGCTGACCAACCCACGTTTACTC 1073
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1016 TGCCTGAGGAACTCATCTTCCATATCAATTATCTTGGTGCTGACCAACCCACCTTTACTC 1075
Query 1074 TCAATTTCTCCAAAGGTTCAAGTCAAGTCATTGCTCAATACTACCAACTTATCCGATTGG 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TCAATTTCTCCAAAGGTTCAAGTCAAGTCATTGCTCAATACTACCAACTTATCCGATTGG 1135
Query 1134 GCCACGAGGGTTATACAAATGTGATGGAGAATTGCAGAGAGAATATGATCGTGCTAAGGA 1193
||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1136 GCCACGAGGGTTACAGAAATGTGATGGAGAATTGCAGAGAGAATATGATCGTCCTAAGGG 1195
Query 1194 AAGGACTTGAGAAGACAGAAAGGTTCAACATCGTATCAAAGGACGAGGGAGTGCCACTTG 1253
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1196 AAGGACTTGAGAAGACAGAAAGGTTCAACATCGTCTCAAAGGACGAGGGAGTGCCACTTG 1255
Query 1254 TCGCTTTCTCCTTGAAAGATAACAGCTCTCACACTGAGTTCGAAATCTCCGACATGCTTC 1313
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1256 TCGCTTTCTCCTTGAAAGATAGCAGCTGTCACACTGAGTTCGAAATCTCCGACATGCTTC 1315
Query 1314 GCAGGTATGGATGGATAGTGCCGGCCTATACAATGCCTCCAGATGCACAACACATCACTG 1373
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1316 GCAGGTATGGATGGATAGTGCCGGCCTACACAATGCCTCCAAATGCACAACACATCACTG 1375
Query 1374 TTCTTCGAGTAGTTATCAGAGAAGATTTCTCGAGAACACTTGCAGAGAGACTTGTGATCG 1433
||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1376 TTCTTCGTGTGGTTATCAGAGAAGATTTCTCGAGAACACTCGCTGAGAGACTTGTGATCG 1435
Query 1434 ATATAGAGAAAGTGATGCGTGAGCTCGATGAGCTTCCTTCTAGAGTGATTCACAAAATAT 1493
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1436 ATATAGAGAAAGTGATGCGTGAGCTCGATGAGCTTCCTTCGAGAGTGATTCACAAAATAT 1495
Query 1494 CACTCGGACAAGAGAAGAGTGAAGCTAACAGCGATAACGTGATGGTGACGGTGAAGAAGA 1553
|||| |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||
Sbjct 1496 CACTTGGACAAGAGAAGAGTGAATCTAACAGCGATAACTTGATGGTCACGGTGAAGAAGA 1555
Query 1554 GCGATGTCGAGAAGCAGAGAGATATCATCATTGGCTGGAAGAAGTTTGTCGCCGACAGGA 1613
||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1556 GCGATATCGACAAGCAGAGAGATATCATCACTGGCTGGAAGAAGTTTGTCGCCGACAGGA 1615
Query 1614 AGAAGACCAGTGGTATCTGTTAATCGAA-TAT-TT-ACTTGAAAATATTTGAAGACTTT- 1669
||||||| ||||||||||| |||||||| ||| || |||| ||| | ||||||||||||
Sbjct 1616 AGAAGACGAGTGGTATCTGCTAATCGAAATATATTTACTTCAAA-TGTTTGAAGACTTTT 1674
Query 1670 ATTAAATAATGCAT--TTGCATTGATTTGGATATTTGAATGTTTCATTTCCCTTTATTGT 1727
||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1675 ATTAA-TAATGCATAATTGCATTGATTTGGATATTTGAATGTTTCATTCCCCTTTATCGC 1733
Query 1728 TGAACCAAATTTCATTT 1744
|||||||| ||||||||
Sbjct 1734 TGAACCAAGTTTCATTT 1750
> AT1G65960.2 | Symbols: GAD2 | glutamate decarboxylase 2 | chr1:24552003-24557730
FORWARD LENGTH=2053
Length=2053
Score = 830 bits (449), Expect = 0.0
Identities = 1042/1324 (79%), Gaps = 58/1324 (4%)
Strand=Plus/Plus
Query 179 TTCGCATCACGTTACGTCCGTACTTCACTTCCTAGGT-TCAAGA-TGCCTGAAAACTCGA 236
|||| ||| || || || || ||| ||||||| | || | ||| || ||| || ||||
Sbjct 140 TTCGGATCTCGCTATGTTCGCACTACACTTCCCAAGTAT-GAGATTG-GTGAGAATTCGA 197
Query 237 TACCGAAAGAAGCGGCGTATCAGATTATCAACGACGAGCTGATGCTTGACGGGAATCC-A 295
|||||||||| || ||||||||||| || || || |||||||||||||| || || || |
Sbjct 198 TACCGAAAGACGCTGCGTATCAGATCATAAAAGATGAGCTGATGCTTGATGGTAACCCAA 257
Query 296 CGCTTAAACTTGGCCTCTTTCGTGACGACGTGGATGGAGCCTGAGTGTGATAAACTCATC 355
|||| ||| | || ||||| ||||| || |||||||| || |||||||| |||||||||
Sbjct 258 GGCTT-AACCTAGCTTCTTTTGTGACTACATGGATGGAACCAGAGTGTGACAAACTCATC 316
Query 356 ATGTCCTCCATTAACAAGAACTATGTTGACATGGACGAGTACCCCGTCACCACCGAACTC 415
||| ||| || || |||||||| ||||| ||||| |||||||| ||||| || || |||
Sbjct 317 ATGGACTCTATCAATAAGAACTACGTTGATATGGATGAGTACCCTGTCACAACTGAGCTC 376
Query 416 CAGAATCGATGTGTGAACATGATTGCAC-ATCTATTCAATGCACC-GT-TAGGAGAGACG 472
||||| |||||||| ||||| || || | | || |||||||| || | |||| | |
Sbjct 377 CAGAACCGATGTGTAAACATTATAGCTCGA-CTGTTCAATGCGCCACTCGAGGA-A-TCT 433
Query 473 GAGACAGCCGTCGGAGT-GGGAACCGTTGGATCATCGGAGGCCATAATGTTGGCCGGTTT 531
||||| || || ||||| ||| || ||||| || || || ||||| ||||| ||||| ||
Sbjct 434 GAGACGGCGGTGGGAGTAGGG-ACAGTTGGTTCTTCAGAAGCCATCATGTTAGCCGGATT 492
Query 532 GGCCTTCAAGCGTAAATGGCAGAACAAGCGCAAAGCCGAAGGCAAACCCGT-CGATAAAC 590
||||||||| | |||||||||||||| ||||| || || || |||||| | || ||||
Sbjct 493 GGCCTTCAAAAGAAAATGGCAGAACAAACGCAAGGCTGAGGGTAAACCC-TATGACAAAC 551
Query 591 CCAACATTGTCACCGGAGCCAATGTTCAAGTGTGTTGGGAGAAATTCGCTAGGTACTTTG 650
||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||| |
Sbjct 552 CCAACATTGTCACCGGAGCCAATGTTCAAGTTTGCTGGGAGAAATTCGCTCGGTACTTCG 611
Query 651 AGGTTGAACTTAAGGAAGTGAAAT-TGAGTGAAGGATACTATGTGATGGACCC-GCAAAA 708
|||| || || |||||||| ||| | |||||||| ||||| |||||||| || | | ||
Sbjct 612 AGGTGGAGCTAAAGGAAGT-AAACCTAAGTGAAGGTTACTACGTGATGGATCCAG-ACAA 669
Query 709 AGCTGTTGATATGGTTGATGAGAACACTATTTGTGTTGCGGCCATTCTTGGT-TCCACTC 767
||| | || ||||| || |||||||| || ||||| || ||||| |||| ||||| |
Sbjct 670 AGCAGCAGAAATGGTAGACGAGAACACAATCTGTGTCGCAGCCATA-TTGGGATCCACAC 728
Query 768 TTAATGGAGAATTTGAAGATGTCAAAC-TCTTGAACGATCTCTTGGTTGAAAAGAACAAA 826
| || || || || ||||| || |||| ||| || || || | | | | ||||| |||
Sbjct 729 TCAACGGTGAGTTCGAAGACGTGAAACGTCTC-AATGA-CT-T-GCTAGTCAAGAA-AAA 783
Query 827 -GA--A-ACCGGATGGGATACACCAATCCACGTGGATGCCGCAAGTGGAGGATTCATTGC 882
|| | || || ||| | ||||| |||||||||||||| ||||||||||| ||||| ||
Sbjct 784 CGAGGAGACTGGTTGGAACACACCGATCCACGTGGATGCAGCAAGTGGAGGGTTCATAGC 843
Query 883 ACCGTTTTTGTATCCGGAACTGGAATGGGACTTTAGACTGCCATTGGTGAAGAGTATCAA 942
|||||| | ||||| ||| | |||||||||||||| || || ||||| ||||| |||||
Sbjct 844 TCCGTTTATCTATCCTGAATTAGAATGGGACTTTAGGCTTCCTTTGGTTAAGAGCATCAA 903
Query 943 TGTGAGTGGTCACAAGTATGGACTTGTGTACGCAGGAATTGGTTGGGT-GATTTGGAGAA 1001
||||||||||||||||||||||| || || || || ||||||||||| | | |||||
Sbjct 904 CGTGAGTGGTCACAAGTATGGACTAGTCTATGCTGGTATTGGTTGGGTCG-TGTGGAGGG 962
Query 1002 ACAA-AGAGGATTTGCCTGAGGAACTCATCTTCCATATCAATTATCTTGGTGCTGACCAA 1060
|| ||||||||| ||||| || || ||||| ||||| ||||||||||||||||| |||
Sbjct 963 -CAGCAGAGGATTTACCTGAAGAGCTTATCTTTCATATTAATTATCTTGGTGCTGATCAA 1021
Query 1061 CCCACGTTT-ACTCTCAATTTCTCCAAAGGTTCAAGTCAAGTCATTGCTCAATACTACCA 1119
||||| ||| ||||||||||||||||| || || || ||| | |||||||||||||||||
Sbjct 1022 CCCAC-TTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATACTACCA 1080
Query 1120 ACTTATCCGA-TTGGGCCACGAGGGTTATACAAATGTGATGGAGAATTGCAGAGAGAATA 1178
|| || || |||| |||||| || | |||||||||||||||||||| |||||| |
Sbjct 1081 GCTCATTCGTCTTGGATT-CGAGGGGTACAAAAATGTGATGGAGAATTGCATAGAGAACA 1139
Query 1179 TGATCGTGCT-AAGGAAAGG-ACTTGAGAAGACAGAAAGGTTCAACATCGTATCAAAGGA 1236
|| | || || || ||| || | | ||||| ||||| | |||||||| || ||||||||
Sbjct 1140 TGGTGGTTCTCAAAGAA-GGTA-TAGAGAAAACAGAGCGTTTCAACATAGTCTCAAAGGA 1197
Query 1237 CGAGGGAGTGCCACTTGTCGCTTTCTC-CTTGAAAGATAACAGCTCTC-ACA-CTGAGTT 1293
| | ||||||||| | ||||| ||||| || || || | || | || ||| | |||||
Sbjct 1198 CCAAGGAGTGCCAGTCGTCGCCTTCTCTCTC-AAGGACCATAGTT-TCCACAAC-GAGTT 1254
Query 1294 CGAAATCTCCGACATGCTTCG-CAGGTATGGATGGATAGTGCCGGCCTATACAATGCCT- 1351
||| ||||| || ||||| || | | | ||| ||||| || || || || || ||||||
Sbjct 1255 CGAGATCTCTGAGATGCTACGTC-GTTTTGGCTGGATCGTCCCAGCTTACACTATGCCTG 1313
Query 1352 CCAGATGCACAACACATCACTGTTCTTCGAGTAGTTATCAGAGAAGATTTCTCGAGAACA 1411
|| |||||||| |||||||| ||||| || || || ||||| ||||||||||| ||||||
Sbjct 1314 CC-GATGCACAGCACATCACGGTTCTGCGTGTTGTCATCAGGGAAGATTTCTCAAGAACA 1372
Query 1412 CTTGCAGAGAGACTTGT-GATCGATATAGAGAAAGTGATGCGTGAGCTCGATGAGCTT-C 1469
|| || ||||||||||| | | ||||| ||| ||| | | |||||| ||| | ||| |
Sbjct 1373 CTCGCGGAGAGACTTGTTGCT-GATATTTCGAAGGTGCTTCATGAGCTAGAT-ACCTTGC 1430
Query 1470 CTTC 1473
||||
Sbjct 1431 CTTC 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86244536310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5