BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488600
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17350.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 922 0.0
> AT5G17350.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: 15 plant structures; EXPRESSED DURING: 8 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G03280.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source:
NCBI BLink). | chr5:5718772-5719608 FORWARD LENGTH=837
Length=837
Score = 922 bits (499), Expect = 0.0
Identities = 609/659 (92%), Gaps = 19/659 (3%)
Strand=Plus/Plus
Query 2 AAACAAACAAAACTTCTTCATAGC--TT--TTGCTCCAACAATCTCTCCTCGAATTCG-A 56
|||||||||||||||||||||| | || ||||||| |||||||||||| |||| || |
Sbjct 8 AAACAAACAAAACTTCTTCATACCTTTTGCTTGCTCCTACAATCTCTCCTTGAATCCGAA 67
Query 57 TCTTTCTTCACT-TAATGGGAAACTACGTTTCTTCCGCTCTAAGCAAAACGTCGTCGTCG 115
|||||||||| | ||||||||||||| |||||||| || |||||||||| |||| |
Sbjct 68 TCTTTCTTCA-TATAATGGGAAACTATGTTTCTTCTGCACTAAGCAAAA---CGTC-T-- 120
Query 116 TCTTCTTCATCATCGGCGGCGAAAGTGATTCTCCCGGACGGTGGAGTGCGTCACATTCAC 175
|| || ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||
Sbjct 121 TCATCATCATCATCGGCGGCGAAAGTGATTCTCCCCGACGGTGGAGTACGTAACATTCAC 180
Query 176 GCGCCGATGAAAGCCGCCGAGCTTATGATGGAGATTCCAAGCTTCTTCCTCGTCGACGCT 235
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCGCCGATGAAAGCTGCCGAGCTTATGATGGAGATTCCAAGCTTCTTCCTCGTCGACGCA 240
Query 236 AAGTCGTTAAAGATCGGCCGGAAGTTTTGTCCGTTAGCAGCCGATGACGACCTTCAAATC 295
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 AAGTCTTTAAAGATCGGTCGGAAGTTTTGTCCGTTAGCCGCCGATGACGACCTTCAAATC 300
Query 296 AAAGGCTGCCACGTGTACGTAGCTTTTCCTATGACGCGTGCCACGTCAGCTGCTAATGCT 355
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 AAAGGCTGCCACGTGTACGTAGCTTTCCCTATGACGCGTGCCACGTCAGCTGCTAATGCT 360
Query 356 TCGGATTTGGCTCGGTTATTCGTAGCTGCTAAGAAACAGCGCCGCC---GCGTGGGAAGT 412
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 TCGGATTTGGCTCGGTTATTCGTAGCTGCTAAGAAACAGCGCCGCCACCGCGTGGGAAGT 420
Query 413 GCTCATTCTTCCGGCGCTGTGAAACACTGTCATAATAACGGAAGGGTTTCGCCGGACGGG 472
| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GATCATTCTTCCGCCGCCGTGAAACACTGTCATAATAACGGAAGGGTTTCGCCGGACGGG 480
Query 473 GA-GGAAGATGACGTCAGGGTGATATCGGCGGGATCAAAGCTGAATTTAGAAGATATTGA 531
|| ||| |||||||||| |||||| || ||||||||||||||||| |||||||||| ||
Sbjct 481 GAAGGA-GATGACGTCAAGGTGATTTCAGCGGGATCAAAGCTGAACCTAGAAGATATCGA 539
Query 532 AGAGTTCTCGGCGGCGGAGTTTATGCATAGGATCTCAGTTTCGAAATCTAAGAAACCAAA 591
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGAGTTTTCGGCGGCGGAGTTTATGCATAGGATCTCAGTTTCGAAATCTAAGAAACCAAA 599
Query 592 GTTAGAAACTATAGCTGAAGAATCTTTGTCTTAAA-CAAAAAATGAAATTTCATTTTTC 649
||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||
Sbjct 600 ATTAGAAACTATAGTTGAAGAATCTTTGTCTTAAAACTAAAAATGAAATTTCATTTTTC 658
Score = 76.8 bits (41), Expect = 3e-13
Identities = 45/47 (96%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 650 TGGTTTCTCTTTTGTGGTATTAATGAACAGAAAGAGACATTAGTCGA 696
||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 716 TGGCTTCTCTTTTGTGGTATTAATGAACAGAAAGAGACATTATTCGA 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5