BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488602
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17370.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1055 0.0
> AT5G17370.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:5721636-5724719 REVERSE LENGTH=1755
Length=1755
Score = 1055 bits (571), Expect = 0.0
Identities = 633/662 (96%), Gaps = 8/662 (1%)
Strand=Plus/Plus
Query 1 GAACAGAGAGAACAGAGTCGA---C---TCCGACACAACATGAAACCAGAACTTCCTGGG 54
||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 19 GAACACAGAGAACAGAGTCGACTCCAAGTCCGACACAACATGAAACCAGAACTTCCTGGG 78
Query 55 TTTTATTACGACGAGGAGAAGAACAGATATTTCCCCATTAAAGGTCCTATTCCTGGGGCA 114
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 79 TTTTATTACGACGAGGAGAAGAACAGATATTTTCCCATTAAAGGTCCTATCCCTGGTGCA 138
Query 115 AAGTCTTCGTCTTCTTCAAGAACGAAACAAAAACCCGAACCAAAGCCTGAACAGGAAACT 174
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 139 AAGTCTTCTTCTTCTTCAAGAACGAAACAAAAACCCGAGCCAAAGCCTGAACAGGAAACT 198
Query 175 AATTATCAGAAGAGGACTAAACTAAAAGCATTGAAGCTAGTTTATTCCCGAGAGTTAAAT 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 AATTATCAGAAGAGGACTAAACTAAAAGCATTGAAGCTAGTTTATTCCCGAGAGTTAAAT 258
Query 235 GGCAATGTTATTCCTGTCAATAAGAAGATGTCTAACTTCAAGGACGAGATTCAAAAGACA 294
|||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 259 GGCAATGTTATTTCTGTCAACAAGAAGATGTCTAACTTCAGGGACGAGATTCAAAAGACA 318
Query 295 CAAGCTTCTTATCCTGTGGTATGGAGATACGGATCCACAGAAGACATAGGCGATACTGCT 354
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 319 CAAGCTTCTTATCCTGTGGTATGGAGATACGGATCCACAGAAGACATTGGCGATACCGCT 378
Query 355 TTGAAACAGTTTCAGGTTGATGTACAAACATCTGTAGGCTTGACCAGAAAGAACATCCTA 414
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 379 TTGAAACAGTTTCAGGTTGATGTACAAACACCTGTAGGCTTGACCAGAAAGAACATCCTA 438
Query 415 GTAGCAGGCAGTGCTGGTGGTTGTTTGAGCATTCTAAGAGTTTCCAAAGATAGACAAGTA 474
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 439 GTAGCAGGCAGTGCTGGTGGTTGCTTGAGCATTCTAAGAGTTTCCAAAGATAGACAAGTA 498
Query 475 TACGATGGTGTAATCGAGTGTGATCCAGTTTCTGTTCTTCCTCGCAAAGAAAACGATACA 534
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 499 TACGATGGTGTAATCGAGTGTGATCCAGTTTCTGTTCTTCCTTGCAAAGAAAACGATACA 558
Query 535 GAAGA-ACGGGAAGCACCTGAGTATATATGGAAACCTGCGCAACCTTGTCTGGTCGCCTT 593
||||| | |||||||||||||| |||||| || |||| ||||||||||||||||||||||
Sbjct 559 GAAGAGA-GGGAAGCACCTGAGCATATATTGAGACCTACGCAACCTTGTCTGGTCGCCTT 617
Query 594 ATCTACTATATCTTCTATTGAGTTAATTGGAAGATCTGATGCATGTGAAAACTCCCACCC 653
|||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 618 ATCTTCTATATCTTCTATTGAGTTAATCGGAAGATCTGATGCATCTGAAAACTCCCACCC 677
Query 654 CG 655
||
Sbjct 678 CG 679
Score = 664 bits (359), Expect = 0.0
Identities = 408/430 (95%), Gaps = 9/430 (2%)
Strand=Plus/Plus
Query 999 GCTCCAAGGAAACATAAACCCGTCTCATGTAATCTATATGCCGTCATCTGTTACATGCCT 1058
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1164 GCTCCAAGGAAACATAAACCCGTCTCATGTAATCTATATGCCGTCATCTCTTACATGCCT 1223
Query 1059 GAAGACACTAAAAACTTCTGATCAGTACTTAATGGCAAGCTCCATGGATGG---AA-C-A 1113
|||||||||||||||||||||||| |||||||||||||||||||||||||| || | |
Sbjct 1224 GAAGACACTAAAAACTTCTGATCAATACTTAATGGCAAGCTCCATGGATGGAACAATCAA 1283
Query 1114 -CTATACGATCAACGCATGGTTAAAAGAGGGGTCGGTGTACAGACATATGAAGGACATGT 1172
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1284 GCTATACGATCAACGCATGGTTAAGAGAGGGGTCGGTGTACAGACATATGAAGGACATGT 1343
Query 1173 AAATTCTCATACTCGCATTGAATTTGGCATTGACCCGTCAGAAAGATTTCTTATGTCAGG 1232
|||||||||||||| ||| ||||||||||| |||||||||||||||||| || |||||||
Sbjct 1344 AAATTCTCATACTCCCATCGAATTTGGCATCGACCCGTCAGAAAGATTTATTTTGTCAGG 1403
Query 1233 AGGAGATGACTGCTATACTCGCATTTGGAGTATCAAATCTGGTCAACTTATGTCTGAAAA 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 AGGAGATGACTGCTATACTCGCATTTGGAGTATCAAATCTGGTCAACTTATGTCTGAAAA 1463
Query 1293 TAAATTCTCCAACTCTGTCCCTTCAGTTGTGTGTTGGTCTACTGATGAAAGACAAAGAGA 1352
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1464 TAAATTCTCCAACTCTGTCCCTTCAGTTGTGTGTTGGTCTGCTGATGAAAGACAAAGAGA 1523
Query 1353 CCACCAGAAAGATAGCATTGGTCATGGGGCATGGCTTGGATCTCGCGAAGCAATATTCAA 1412
|| |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 1524 CCG---GAAAGATAGCATTGGTCACGGGGCATGGCTTGGATCACGCGAAGCGATATTCAA 1580
Query 1413 CTTGTTGTAA 1422
||||||||||
Sbjct 1581 CTTGTTGTAA 1590
Score = 412 bits (223), Expect = 3e-114
Identities = 247/259 (95%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 655 GAAGTGAACATACTTATTACGCGAAGCCTCCAAGGGAATGTTTCCTCTGAATGTACCATT 714
|||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 751 GAAGTGAACATACTTACTCCGCGAAGCCTCCAAGGGAATGTTTCCTCTGAGTGTACCATT 810
Query 715 TGGACAGCTGATTGCAATATAAGTGGGAGTCATGCAGCTATTGGTACCGACTTAGGAGCT 774
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 TGGACATCTGATTGCAATATAAGTGGGAGTCATGCAGCTATTGGTACCGACTTAGGAGCT 870
Query 775 GCTTTGGTTGATTTGGAAACAGGAAAAGGTTCATACTTTCTCCGAAGCAAAAGCGATGTT 834
| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 871 GGTTTGGTTGATTTGGAAACAGGAGTAGGTTCATACTTTCTTCGAAGCAAAAGCGATGTT 930
Query 835 TTTACGCTACAATTTCATCAATCGGGAAACATTGTTCATTGCGGACTCAGAAATGGAGCC 894
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 TTTGCTCTACAATTTCATCAATCGGGAAACATTGTTCATTGCGGACTCAGAAATGGAGCC 990
Query 895 ATTGTGTCAGTGGATTTAC 913
||||||||||| ||| |||
Sbjct 991 ATTGTGTCAGTTGATCTAC 1009
Score = 102 bits (55), Expect = 9e-21
Identities = 63/67 (94%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 914 ACACCAGATACGATATCAATCATCGAGTAAAACTGGTCAAACTACTACAAATAAACAATG 973
||||||||||||||||||||||||||||||||| |||| |||| ||||||| ||||||||
Sbjct 1047 ACACCAGATACGATATCAATCATCGAGTAAAACCGGTCTAACTTCTACAAAGAAACAATG 1106
Query 974 GTTCGAG 980
|||||||
Sbjct 1107 GTTCGAG 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70079960820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5