BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488603
Length=1853
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17380.1 | Symbols: | Thiamine pyrophosphate dependent pyru... 2832 0.0
> AT5G17380.1 | Symbols: | Thiamine pyrophosphate dependent pyruvate
decarboxylase family protein | chr5:5724759-5726746 REVERSE
LENGTH=1906
Length=1906
Score = 2832 bits (1533), Expect = 0.0
Identities = 1738/1836 (95%), Gaps = 17/1836 (1%)
Strand=Plus/Plus
Query 2 ATGGCGGATAATTCAGCAACCACTCCACCGTCAATTGATGGCAACGTTCTCGTGGCCAAG 61
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 27 ATGGCGGATAAATCAGAAACCACTCCACCGTCAATTGATGGCAACGTTCTCGTGGCCAAG 86
Query 62 TCACTATCTCATCTCGGCGTCACCCACATGTTCGGCGTCGTGGGAATCCCCGTCACGTCT 121
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 87 TCACTCTCTCATCTCGGCGTAACCCACATGTTCGGCGTCGTTGGAATCCCCGTCACGTCT 146
Query 122 CTAGCTAGCCGAGCCATGGCTCTAGGCATACGTTTCATCGCCTTCCACAACGAACAATCC 181
|||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 147 CTAGCTAGCCGAGCTATGGCTTTAGGTATACGTTTCATCGCCTTCCACAACGAACAATCC 206
Query 182 GCCGGATACGCCGCTTCTGCTTACGGTTACCTCACGGGTAAACCCGGTATCCTTCTT-AC 240
|| || ||||||||||| |||||||||||||||||||||||||| ||||||||| || ||
Sbjct 207 GCTGGTTACGCCGCTTCAGCTTACGGTTACCTCACGGGTAAACCGGGTATCCTT-TTAAC 265
Query 241 GGTTTCGGGTCCGGGTTGCGTTCACGGGCTCGCGGGTCTTTCCAACGCTTGGGCTAATAC 300
|||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||
Sbjct 266 GGTTTCGGGTCCGGGTTGTGTTCATGGGCTCGCGGGTCTTTCCAACGCTTGGGTTAATAC 325
Query 301 ATGGCCGATGGTGATGATCTCTGGTTCTTGTGATCAGAGAGATGTTGGTCGTGGAGATTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 ATGGCCGATGGTGATGATCTCTGGTTCTTGTGATCAGAGAGATGTTGGTCGTGGAGATTT 385
Query 361 CCAGGAGCTTGATCAGATCGAAGCTGTGAAAGCTTTTTCGAAATTATCGGAGAAAGCGAA 420
|||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct 386 CCAGGAGCTTGATCAGATCGAAGCGGTTAAAGCTTTCTCGAAATTATCAGAGAAAGCGAA 445
Query 421 AGATGTTCGTGAAATCCCTAATTGTGTTTCTAGGGTTTTGGATCGAGCTGTTGCGGGTCG 480
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 446 AGATGTTCGTGAAATCCCTGATTGTGTTTCTAGGGTTTTGGATCGAGCTGTTTCGGGTCG 505
Query 481 ACCCGGTGGGTGTTATCTGGATATTCCGACTGATGTGTTACGTCAGAAGATTTCTGAATC 540
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 506 ACCCGGTGGGTGTTATCTGGATATTCCGACTGATGTGTTGCGTCAGAAGATATCGGAATC 565
Query 541 TGAAGCGGATAAATTGGTGGATGAGATTGTGAAATCTCTAAAGCAAGAACCGATTCG-GG 599
||||| |||||||||||||||||| ||| || ||| | ||| ||||||||||||| ||
Sbjct 566 GGAAGCTGATAAATTGGTGGATGAGGTTGAGAGATCACGGAAGGAAGAACCGATTCGTGG 625
Query 600 AGTCTCTGAGATCGGAGATTGAATCGGCGGTTTCGTTGCTGAGGAAAGCTGAGAGGCCAT 659
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 626 A-TCTCTGAGATCGGAGATTGAATCGGCGGTTTCGTTGCTGAGGAAAGCTGAGAGGCCGT 684
Query 660 TGATTGTGTTTGGTAAAGGAGCTGCGTATTCGAGAGCAGAGGATGAGCTGAAGAAGCTTG 719
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 685 TGATTGTGTTTGGTAAAGGAGCTGCGTATTCGAGAGCAGAAGATGAGCTGAAGAAGCTTG 744
Query 720 TTGAAATTACTGGAATACCCTTCTTACCAACTCCGATGGGTAAAGGTTTGTTACCGGACA 779
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 745 TTGAAATTACTGGAATACCCTTTTTACCAACTCCGATGGGTAAAGGTTTGTTACCGGACA 804
Query 780 CACACGAGCTCTCGGCGACTGCGGCGAGGTCTCTTGCTATTGGGAAATGTGATGTTGCGT 839
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 805 CACACGAGTTCTCGGCGACTGCGGCGAGGTCTCTTGCTATTGGGAAATGTGATGTCGCGT 864
Query 840 TGGTGGTTGGAGCTAGGCTTAACTGGCTTCTTCATTTCGGAGAGTCGCCTAAATGGGATA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 TGGTGGTTGGAGCTAGGCTTAACTGGCTTCTTCATTTCGGAGAGTCGCCTAAATGGGATA 924
Query 900 AAGATGTGAAATTTATATTGGTGGATGTCTCTGAGGAAGAGATTGAGCTTAGGAAACCTC 959
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 925 AAGATGTAAAATTTATATTGGTGGATGTCTCTGAGGAAGAGATTGAGCTAAGGAAACCTC 984
Query 960 ATTTGGGGATTGTTGGAGATGCTAAAACAGTGATTGGATTGTTGAACA-AGGAGATCAAA 1018
|||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||
Sbjct 985 ATTTGGGGATTGTTGGAGATGCTAAAACTGTGATTGGATTGTTGAATAGAG-AGATCAAA 1043
Query 1019 GATGATCCTTTTTGTTTGGGGAAGTCTAATCCATGGGTGGAATCGATTTCGAAGAAGGCG 1078
|| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1044 GACGATCCTTTTTGTTTAGGGAAGTCTAATTCATGGGTGGAATCGATTTCGAAGAAGGCG 1103
Query 1079 AAAGAGAACGGTGAGAAGATGGAGGCACAGCTTGCTAAAGATGTGGTTCCTTTCAATTTC 1138
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1104 AAAGAGAATGGTGAGAAGATGGAGATACAGCTTGCTAAAGATGTGGTTCCTTTCAATTTC 1163
Query 1139 TTGACTCCTATGAGGATAATCAGAGACGCGATTTTGGCGGTGGAAGGACCGAGTCCTGTT 1198
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1164 TTGACTCCTATGAGGATAATCAGAGACGCTATTTTGGCTGTGGAAGGACCGAGTCCTGTT 1223
Query 1199 GTGGTATCGGAAGGTGCTAATACAATGGATGTAGGAAGATCGGTTTTGGTTCAGAAAGAG 1258
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1224 GTGGTATCGGAAGGAGCTAATACAATGGATGTAGGAAGATCTGTTTTGGTTCAGAAAGAG 1283
Query 1259 CCAAGGACAAGGATTGATGCAGGAACTTGGGGAACAATGGGTGTTGGTTTAGGTTATTGT 1318
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1284 CCAAGGACAAGGCTTGATGCAGGAACTTGGGGAACTATGGGTGTTGGTTTAGGTTATTGT 1343
Query 1319 ATTGCTGCTGCTGTTGCTTCTCCTGATCGGCTTGTTGTCGCCGTTGAAGGAGACTCTGGT 1378
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1344 ATTGCTGCTGCTGTTGCTTCTCCTGATCGGCTTGTTGTCGCTGTTGAAGGAGACTCTGGT 1403
Query 1379 TTCGGATTCAGCGCCATGGAAGTTGAGACGTTGGTTCGATACAATCTACCTGTGGTGATT 1438
|| || ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 1404 TTTGGCTTCAGCGCCATGGAAGTCGAGACATTGGTTCGATACAATCTTGCTGTGGTGATT 1463
Query 1439 ATAGTCTTCAACAATGGTGGTGTATATGGTGGTGATCGAAGGGGTCCTGAAGAAATCTCC 1498
||||||||||||||||||||||| || || |||||||||||||| |||||||||||||||
Sbjct 1464 ATAGTCTTCAACAATGGTGGTGTCTACGGCGGTGATCGAAGGGGACCTGAAGAAATCTCC 1523
Query 1499 GGTCCTCATAAAGAAGATCCAGCACCAACATCTTTTGTTCCTAATGCAGGCTACCACAAG 1558
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1524 GGTCCTCATAAAGAAGATCCAGCACCAACATCATTTGTTCCTAATGCAGGCTACCACAAG 1583
Query 1559 CTTATTGAAGCCTTTGGAGGCAAAGGTTATATTGTGGAAACACCTGATGAGCTTAAATCC 1618
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1584 CTCATTGAAGCCTTTGGAGGCAAAGGTTATATTGTGGAAACACCCGATGAGCTTAAATCC 1643
Query 1619 AG-TCTCGCTGAGTCGTTCGCCGCAAGAAAACCCGCAGTGGTTAACGTCGTCATCGATCC 1677
| ||||||||||||||||||||||||||||||||| ||||| || || | || |||||
Sbjct 1644 -GCTCTCGCTGAGTCGTTCGCCGCAAGAAAACCCGCGGTGGTAAATGTTATTATTGATCC 1702
Query 1678 TTTCGCTGGTGCTGAGAGTGGGAGATTACAGCACAAGAACTAAAA-GCTTTGTGGAGAGT 1736
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1703 TTTTGCTGGTGCTGAGAGTGGGAGATTACAGCACAAGAACTAAAAAGCTTTGTGGAGAGT 1762
Query 1737 ---TTTAATAATAATGTTGAAGTTGTTTGTTGTGAACaaaaaaaaaaaGAAGCGTTTTAG 1793
||||| | ||||||||||||||||||||||||||||||| | | | ||||||||
Sbjct 1763 CCCTTTAA-A-TAATGTTGAAGTTGTTTGTTGTGAACAAAAAGGATAT-A--CGTTTTAG 1817
Query 1794 TTTTCAGTTTTTCACTATTGTAAACCGGATCATAAA 1829
||||| ||||||||||||||||||||||||||||||
Sbjct 1818 TTTTCTGTTTTTCACTATTGTAAACCGGATCATAAA 1853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91716395715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5