BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488605
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17400.1 | Symbols: ER-ANT1 | endoplasmic reticulum-adenine ... 1694 0.0
> AT5G17400.1 | Symbols: ER-ANT1 | endoplasmic reticulum-adenine
nucleotide transporter 1 | chr5:5728789-5730376 REVERSE LENGTH=1296
Length=1296
Score = 1694 bits (917), Expect = 0.0
Identities = 1058/1126 (94%), Gaps = 10/1126 (1%)
Strand=Plus/Plus
Query 1 AACGAAATCGCTTCCTCTTCTTCTCCTCGACCACCTGGAAATCAATCTTTTGCCGCCGAG 60
||||||||||| |||||||||||||||| | |||||||||||||||||| |||||||||
Sbjct 29 AACGAAATCGCCTCCTCTTCTTCTCCTCCTCGACCTGGAAATCAATCTTTCGCCGCCGAG 88
Query 61 TTCTTCTCTCTGCGGC-G-GAATCATTTAGCAATCTCCAGAATTAGGTG-GGGAAAAAGA 117
|||||||||||||||| | |||||| ||||||||||||||||||||||| ||| ||||||
Sbjct 89 TTCTTCTCTCTGCGGCGGAGAATCAATTAGCAATCTCCAGAATTAGGTGAGGG-AAAAGA 147
Query 118 GGATGGCTTTGGTCGGAAAATCCGAGAGATTCTCTGCTGATTTTGTGATGGGTGGTGCTG 177
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 GGATGGCTTTGATCGGAAAATCCGAGAGATTCTCTGCTGATTTTGTGATGGGTGGTGCTG 207
Query 178 CAGCCATTGTTGCCAAATCTGCAGCTGCTCCAATCGAAAGGGTGAAGCTTTTACTGCAGA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 CAGCCATTGTTGCCAAATCTGCAGCTGCTCCAATCGAAAGGGTGAAGCTTTTACTGCAGA 267
Query 238 ATCAAGGAGAGATGATAAAGACAGGACATCTAATAAGACCTTACACTGGTTTGGGTAATT 297
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 268 ATCAAGGGGAGATGATAAAGACTGGACATCTCATAAGACCTTACACTGGTTTGGGTAATT 327
Query 298 GCTTTGCCAGAATCTTTAGAGAAGAAGGTGTTTTGTCCTTTTGGAGAGGAAATCAAGCCA 357
||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 328 GCTTTACCAGAATCTATAGAGAAGAAGGTGTTTTGTCCTTTTGGAGAGGAAACCAAGCCA 387
Query 358 ATGTCATTCGATATTTCCCTACACAGGCTTCCAACTTTGCATTTAAAGGTTACTTCAAGA 417
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 ATGTCATACGATATTTCCCTACACAGGCTTCCAACTTTGCATTTAAAGGTTACTTCAAGA 447
Query 418 ACCTTCTCGGATGTTCGAAAGAGAAAGATGGTTACTTGAAGTGGTTTGCTGGAAACGTAG 477
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 448 ACCTTCTTGGATGTTCGAAAGAGAAAGATGGTTACTTGAAGTGGTTTGCTGGAAATGTAG 507
Query 478 CTTCAGGAAGCGCTGCTGGAGCAACAACTTCCTTGTTTCTGTACCATCTGGATTATGCGC 537
|||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 508 CTTCGGGAAGTGCTGCTGGAGCAACAACTTCCTTGTTTCTGTACCATTTGGATTATGCGC 567
Query 538 GGACCCGTTTAGGCACTGATGCAAAGGAGTGTTCTGTTAATGGCAAGAGACAGTTTAAAG 597
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 568 GGACCCGTTTAGGCACTGATGCAAAGGAATGTTCTGTTAATGGCAAGAGACAGTTTAAAG 627
Query 598 GGATGATTGATGAGTATCGTAAAACATTGTCGAGCGATGGTATTAAAGGCCTTTACCGTG 657
||||||| |||| |||||||||||| ||||| || || ||||||||||| ||||||||||
Sbjct 628 GGATGATCGATGTGTATCGTAAAACTTTGTCAAGTGACGGTATTAAAGGTCTTTACCGTG 687
Query 658 GATTTGGCGTGTCAATAGTGGGAATCACTCTGTACCGAGGAATGTATTTTGGGATGTACG 717
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 688 GATTTGGTGTGTCAATAGTGGGAATCACTCTTTACCGAGGAATGTATTTTGGGATGTACG 747
Query 718 ATACCATCAAACCCATTGT-TCTAGTCGGTTCCTTAGAGGGAAACTTCTTGGCTAGCTTT 776
| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 748 ACACCATCAAACCCATTGTGT-TAGTCGGTTCCTTAGAGGGAAACTTCTTGGCTAGTTTT 806
Query 777 CTATTGGGTTGGAGCATTACTACCTCTGCAGGAGTCATTGCTTATCCTTTTGACACGCTT 836
|||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 807 CTATTGGGTTGGAGTATTACTACCTCTGCAGGCGTCATTGCTTACCCTTTTGACACACTT 866
Query 837 AGGAGGAGAATGATGCTTACATCAGGACAACCTGTAAAATACCGGAATGCTATTCACGCC 896
||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| |||
Sbjct 867 AGGAGGAGAATGATGCTTACATCAGGACAACCTGTTAAATACCGGAACACCATTCATGCC 926
Query 897 TTAACAGAGATAATGAAATCAGAAGGGTTCTATGCGCTATATAGAGGAGTTACTGCGAAC 956
|||| ||||||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 927 TTAAGAGAGATATTGAAGTCGGAAGGGTTCTATGCGCTATATAGAGGAGTTACTGCGAAC 986
Query 957 ATGCTTCTTGGAGTAGCAGGAGCGGGAGTTCTTGCAGGG-TATGATCAGCTTCACTTGAT 1015
||||||||||||||||||||||| ||||| ||||| ||| ||||||||||||||| |||
Sbjct 987 ATGCTTCTTGGAGTAGCAGGAGCAGGAGTGCTTGC-GGGATATGATCAGCTTCACCAGAT 1045
Query 1016 TGCTTATAAGCATTGGGTTCAGTAGTTTTGAATCAAATCAGAAACTATTACAATGAAAAC 1075
|||||||||||||||||||||||||||||| | |||| | ||||| || ||||||||| |
Sbjct 1046 TGCTTATAAGCATTGGGTTCAGTAGTTTTGGACCAAACCCGAAACGATGACAATGAAAGC 1105
Query 1076 TCAGCTCAAGAAAGAAAAGGT-AGCAAACACCAAGAAGTCTCACTT 1120
| ||||||| ||||| ||||| || |||||||||||||||||||||
Sbjct 1106 TGAGCTCAA-AAAGAGAAGGTTAGTAAACACCAAGAAGTCTCACTT 1150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54919396230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5