BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488610
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17440.1 | Symbols: | LUC7 related protein | chr5:5749762-5... 2425 0.0
AT3G03340.1 | Symbols: UNE6 | LUC7 related protein | chr3:78632... 1206 0.0
> AT5G17440.1 | Symbols: | LUC7 related protein | chr5:5749762-5753643
FORWARD LENGTH=1530
Length=1530
Score = 2425 bits (1313), Expect = 0.0
Identities = 1437/1496 (96%), Gaps = 12/1496 (1%)
Strand=Plus/Plus
Query 1 CAAAAACCC-AATCTCTCTGTTCGCAGAGAGGATCAATTCGTGATTCAGAGAATCAAACT 59
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 CAAAAACCCAAATCTCTCTGTTCGCAGAGAGGATCAATTCGTGATTCAGAGAATCAAACT 63
Query 60 T--GGTGTGTGTGAGATAACGAAGATGGACGCTATGAGGAAACAACTCGATGTGCTCATG 117
| ||| | | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 64 TACTGTGAGAGAGAGATAACGAAGATGGACGCTATGAGGAAGCAACTCGATGTGCTCATG 123
Query 118 GGAGCTAACAGAAACGGCGATGTCACGGAGGTCAATCGCAAATACTACGACCGTGATGTT 177
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 124 GGAGCTAACAGAAACGGCGATGTCACTGAGGTCAATCGCAAATACTACGACCGCGATGTT 183
Query 178 TGCCGTCTTTACCTATCTGGTCTCTGTCCTCACGAGCTCTTCCAATTGACGAAAATGGAT 237
|||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 184 TGCCGTCTTTACCTCTCTGGTCTCTGCCCTCACGAGCTTTTCCAATTGACGAAAATGGAT 243
Query 238 ATGGGTCCTTGCCCAAAGGTGCACTCTTTGCAGCTGAGGAAAGAATATAAAGAAGCAAAG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 244 ATGGGTCCTTGCCCAAAGGTGCACTCTTTGCAGCTGAGGAAAGAATATAAAGATGCAAAG 303
Query 298 GCAAAAGGTGTTGACAACTACGATAGGGAATTGGAAGATGCGATAGATAGGCTTATTGTT 357
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 304 GCAAAAGGTGTTGACAACTATGATAGGGAATTGGAAGATGCGATAGATAGGCTTATTGTT 363
Query 358 GAGTGTGATAGGAAGATTGGTAGGGCTCTTAATCGTCTTCAGGAAGAGGATGCCAAAGCT 417
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 364 GAGTGTGATAGGAAGATTGGTAGGGCTCTTAATCGTCTTCAAGAAGAGGATGCCAAAGCT 423
Query 418 GCCATTGCAATTTCTGTCACAGAATTTACTCAGTCGCCTGAAATTCTTGAATTATCGAAG 477
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 424 GCCATTGCAATTTCTGTCACAGAATTTACTCAGTCACCTGAAATTCTTGAATTATCGAAG 483
Query 478 CAAATCAAAGAGAAGATGAAGGAAGCAGACCTGCACGATCTTGAAGGCAAAACAGATCTG 537
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 CAAATCAAAGAAAAGATGAAGGAAGCAGACCTGCACGATCTTGAAGGCAAAACAGATCTG 543
Query 538 AAGATTAGAGCTCTTGAGTTAGTTGAAGAGATGAGGACGAAGAGAGCTGACCTACAGGCT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 AAGATTAGAGCTCTTGAGTTAGTTGAAGAGATGAGGACGAAGAGAGCTGACCTACAGGCT 603
Query 598 GTGCTACTGTTGGATGCCTTCAACAAAGATAGGGCATCCTTGCAACAGCCCA-TTCCAGC 656
|||||||||||||||||||| |||||||||||| |||||||||||||| | | |||||||
Sbjct 604 GTGCTACTGTTGGATGCCTTTAACAAAGATAGGACATCCTTGCAACAGGC-AGTTCCAGC 662
Query 657 TCAGCAACCAGCTGCAGCGTTACCTCCTCCCGATCCTCGTACTCAAGAAATGATCAATGA 716
|||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 663 TCAGCAACCAGCTGCAACTTTACCTCCGCCCGATCCTCGTACTCAAGAAATGATCAATGA 722
Query 717 AAAACTAAAGAAAGCAGAAGAGCTTGGTGAACAAGGAATGGTTGATGAGGCGCAGAAAGC 776
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 723 AAAACTAAAGAAAGCAGAAGAGCTTGGTGAACAAGGGATGGTTGATGAAGCGCAGAAAGC 782
Query 777 ACTAGAAGAGGCGGAAGCTCTTAAGAAGCTTACTGCTAGACAAGAACCTGTAGTGGATTC 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 ACTAGAAGAGGCGGAAGCTCTTAAGAAGCTTACTGCTAGACAAGAACCTGTAGTGGATTC 842
Query 837 AACCAAGTACACTGCTGTTGACGTGCGCATTACAGACCAGAAGCTGCGTCTATGTGACAT 896
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 AACCAAGTACACTGCTGCTGACGTGCGCATTACAGACCAGAAGCTGCGTCTATGTGACAT 902
Query 897 ATGCGGAGCATTTTTGAGCGTCTATGACAGTGATCGTCGGTTAGCTGATCATTTTGGAGG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 ATGCGGAGCATTTTTGAGCGTCTATGACAGTGATCGTCGGTTAGCTGATCATTTTGGAGG 962
Query 957 GAAGCTTCATTTGGGTTACATGCTGATCCGCGACAAATTGGCAGAGCTTCAGGAGGAGAA 1016
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GAAGCTTCACTTGGGTTACATGCTGATCCGCGACAAATTGGCAGAGCTTCAGGAGGAGAA 1022
Query 1017 GAACAAAGTTCACAAGGAACGGGTCGaagaaaggagatcgaaggagagaagtagagagcg 1076
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1023 GAACAAAGTTCACAAGGAACGGGTCGAAGAAAGGAGATCAAAGGAGAGGAGTAGAGAGCG 1082
Query 1077 agaaccaagtaaagacagagacggaggagaTAGCCGTGACCGTGGAAGAGATGTTGACCG 1136
|||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1083 AGAATCAAGTAAAGACAGAGACGGAGGAGATAACCGTGACCGAGGAAGAGATGTTGACCG 1142
Query 1137 TAGGAGTAGAGATCGCGACAGGCACCATGACCACCGAGAACATGACAGAAACTATAATCA 1196
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 CAGGAGTAGAGATCGTGACAGGCACCATGACCACCGAGAACATGACAGAAACTATAATCA 1202
Query 1197 GTCACGTGGCTATGAGTCGAGAAGCCGGCGCAGTTCGCGGTCCCGGTCTAGGGAAAGACC 1256
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1203 GTCACGTGGCTATGACTCAAGAAGCCGGCGCAGTTCACGGTCCCGGTCTAGGGAAAGACC 1262
Query 1257 GAGGGATTATGATCGCCGCAGACGCCATGACCGCTACTAAGACCCTGCCAAAGATGGTTG 1316
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1263 GAGGGATCATGATCGCCGCAGACGCCATGACCGCTACTAAAACCCTGCCAAAGATGGTTG 1322
Query 1317 CACCGGGTTTAAGGGGTTCTTACAGATGCGTTTAGGATCAATTTGGAGTTGCAAACACTT 1376
|||| |||||||| ||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1323 CACCTGGTTTAAGAGGTTCTTACAGATGCGTTTAGGATCTATTTGGAGTTACAAACACTT 1382
Query 1377 TCATTTTTCTTTGCTCAAGTGTTTTAAGGATTTTTTGAGATTGTAAGTTACTA-AAGTTT 1435
|| |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||
Sbjct 1383 TCTTTTTTCTTTGCTCAAGTGTTTTAAGGATTTTT-GAGATTGTAACTTACTTTAAGTTT 1441
Query 1436 GTAAGAGGAGCTCCTCCAGATAT-TTT--T--GATTTTTATGTTGTTGACATCAAA 1486
|||||||||||| || ||||||| ||| | | ||||||||||||||||||||||
Sbjct 1442 GTAAGAGGAGCTTCTTCAGATATCTTTAATTTGTTTTTTATGTTGTTGACATCAAA 1497
> AT3G03340.1 | Symbols: UNE6 | LUC7 related protein | chr3:786320-790077
FORWARD LENGTH=1643
Length=1643
Score = 1206 bits (653), Expect = 0.0
Identities = 1053/1243 (85%), Gaps = 40/1243 (3%)
Strand=Plus/Plus
Query 70 GAGATAACGAAGATGGACGCTATGAGGAAACAACTCGATGTGCTCATGGGAGCTAACAGA 129
|||| ||||| ||||||||||| ||||| || || ||||||||||||||||||||| ||
Sbjct 108 GAGAGAACGACTATGGACGCTATAAGGAAGCAGCTTGATGTGCTCATGGGAGCTAACCGA 167
Query 130 AACGGCGATG-TCACGGAGGTCAATCGCAAATACTACGACCGTGATGTTTGCCGTCTTTA 188
|||||||| | ||| |||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 168 AACGGCGACGTTCA-GGAGGTGAATCGCAAATACTACGACCGTGATGTGTGTCGTCTTTA 226
Query 189 CCTATCTGGTCTCTGTCCTCACGAGCTCTTCCAATTGACGAAAATGGATATGGGTCCTTG 248
| | ||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 227 CTTGTCTGGTCTCTGCCCTCACGATCTCTTCCAATTGACGAAAATGGATATGGGACCATG 286
Query 249 CCCAAAGGTGCACTCTTTGCAGCTGAGGAAAGAATATAAAGAAGCAAAGGCAAAAGGTGT 308
|||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct 287 CCCAAAGGTGCACTCTTTGCAGCTTCGGAAAGAATACCGAGAAGCAAGGGCAAAAGGTGT 346
Query 309 TGACAACTACGATAGGGAATTGGAAGATGCGATAGATAGGCTTATTGTTGAGTGTGATAG 368
||| |||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 347 TGATAACTACGACAGGGAATTGGAAGATGCCATAGACAGGCTTATCGTTGAGTGTGATAG 406
Query 369 GAAGATTGGTAGGGCTCTTAATCGTCTTCAGGAAGAGGATGCCAAAGCTGCCATTGCAAT 428
||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||| ||
Sbjct 407 GAAGATTGGTAGGGCCCTTAAGCGTCTTCAAGAAGAGGACGCCAAAGCTGCCATTGCCAT 466
Query 429 TTCTGTCACAGAATTTACTCAGTCGCCTGAAATTCTTGAATTATCGAAGCAAATCAAAGA 488
||||||| | ||| | |||||||||||||||||||| || |||||| || ||||||||||
Sbjct 467 TTCTGTCTCTGAAGTCACTCAGTCGCCTGAAATTCTCGAGTTATCGGAGAAAATCAAAGA 526
Query 489 GAAGATGAAGGAAGCAGACCTGCACGATCTTGAAGGCAAAACAGATCTGAAGATTAGAGC 548
|||||||||||||||||| | ||||||||||||||||||| ||||| |||||||||||
Sbjct 527 GAAGATGAAGGAAGCAGATATCCACGATCTTGAAGGCAAAATGGATCTTAAGATTAGAGC 586
Query 549 TCTTGAGTTAGTTGAAGAGATGAGGACGAAGAGAGCTGACCTACAGGCTGTGCTACTGTT 608
|||||||||||| |||||||||||||| ||||||||||||| |||||| ||| | |||||
Sbjct 587 TCTTGAGTTAGTCGAAGAGATGAGGACCAAGAGAGCTGACCAACAGGCGGTGTTGCTGTT 646
Query 609 GGATGCCTTCAACAAAGATAGGGCATCCTTGCAACAGCCCATTCCAGCTCAGCAACCAGC 668
||| ||||||||||||||||| |||||||||| ||||||| |||||||||| | |||| |
Sbjct 647 GGAAGCCTTCAACAAAGATAGAGCATCCTTGCCACAGCCCGTTCCAGCTCAACCACCATC 706
Query 669 TGCAGCGTTACCTCCTCCCGATCCTCGTACTCAAGAAATGATCAATGAAAAACTAAAGAA 728
| | | |||||||| || |||||||| |||||||||||||| ||||| ||||| |||||
Sbjct 707 TTCCGAATTACCTCCACCGGATCCTCGCACTCAAGAAATGATAAATGAGAAACTGAAGAA 766
Query 729 AGCAGAAGAGCTTGGTGAACAAGGAATGGTTGATGAGGCGCAGAAAGCACTAGAAGAGGC 788
|||||||| |||||||||||||||||||||||||| || |||||||| || ||||||||
Sbjct 767 GGCAGAAGATCTTGGTGAACAAGGAATGGTTGATGAAGCCCAGAAAGCCCTGGAAGAGGC 826
Query 789 GGAAGCTCTTAAGAAGCTTACTGCTAGACAAGAACCTGTAGTGGATTCAACCAAGTACAC 848
|||||||||||||||||||| | ||||| ||||||| || |||||||| ||||||||
Sbjct 827 TGAAGCTCTTAAGAAGCTTACAGTTAGACGAGAACCTCCAGCAGATTCAACGAAGTACAC 886
Query 849 TGCTGTTGACGTGCGCATTACAGACCAGAAGCTGCGTCTATGTGACATATGCGGAGCATT 908
|||||||| |||||||| |||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 887 CGCTGTTGATGTGCGCATCACAGACCAAAAGTTGCGTCTATGTGACATATGTGGAGCATT 946
Query 909 TTTGAGCGTCTATGACAGTGATCGTCGGTTAGCTGATCATTTTGGAGGGAAGCTTCATTT 968
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| |
Sbjct 947 CTTGAGCGTCTATGACAGTGATCGCCGTTTAGCTGATCATTTTGGGGGGAAGCTTCATCT 1006
Query 969 GGGTTACATGCT-GATCCGCGACAAATTGGCAGAGCTTCAGGAGGAGAAGAACAA-AGTT 1026
|| |||||||| | |||| |||||||| ||||||||| ||| |||||| ||| | |
Sbjct 1007 AGGATACATGCTAG-TCCGGGACAAATTAACAGAGCTTCTGGATGAGAAGGCCAATA-TA 1064
Query 1027 CACAAGGAACGGGTCGaagaaaggagatcg-aaggagagaagtagagagcgagaaccaag 1085
| ||||||| | || || | ||| | || || || ||| ||||| |||| ||||
Sbjct 1065 CGCAAGGAAAGA-TC-AA-A--GGA-A-CGGAAC-AGT-AAG--GAGAG--AGAATCAAG 1111
Query 1086 taaagac--agagacggagga-ga---TAGCCGTGACCGTGGAAGAGATGT-TGACCGTA 1138
||||||| ||||| || | || ||| ||||| | | |||||||| | ||| || |
Sbjct 1112 TAAAGACCGAGAGAAAGAACAAGAAACTAGTCGTGAACATCGAAGAGAT-TATGATCGCA 1170
Query 1139 GGAGTAGAGATCGCGACAGGCACCATGACC---ACCGAGAACATGACAGAAACTATAATC 1195
||||||||||||| || ||||||||||||| | || ||||| |||||| ||||| |||
Sbjct 1171 GGAGTAGAGATCGAGATAGGCACCATGACCGTGATCGTGAACAAGACAGAGACTATGATC 1230
Query 1196 AGTCACG-TGGCTATGA-GTCGAGAAGCCGG-CGCAGTTCGCGGTCCCGGTCTAGGGAAA 1252
||||| | | | || | | ||| | || | | | || |||||| |||| || || |
Sbjct 1231 GGTCACACT--CAA-GAAG-C-AGACGTAGGTCAC-GCTCACGGTCCAGGTCAAGAGATA 1284
Query 1253 GACCGAGGGATTATGATCGCCGCAGACGCCATGACCGCTACTA 1295
|||| ||||| |||||||||| ||| || || ||||||||||
Sbjct 1285 GACCAAGGGACTATGATCGCCACAGGCGTCACAACCGCTACTA 1327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73292795700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5