BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488611
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17450.1 | Symbols: HIPP21 | Heavy metal transport/detoxific... 948 0.0
> AT5G17450.1 | Symbols: HIPP21 | Heavy metal transport/detoxification
superfamily protein | chr5:5755322-5756888 FORWARD
LENGTH=659
Length=659
Score = 948 bits (513), Expect = 0.0
Identities = 629/680 (93%), Gaps = 27/680 (4%)
Strand=Plus/Plus
Query 1 ATACATATTAATTTATACACATATTTTTGATCATATATATACATAGtttttttG-T--TG 57
||||||||||| || |||||| | ||||||| ||||| |||||||||||||| | |
Sbjct 1 ATACATATTAA-TT-TACACACA--TTTGATC--ATATACACATAGTTTTTTTGCTGACG 54
Query 58 -AAGAGGAGAATGGGTGCATTTGATTATATATCTAGCTTTTGTTCATACACATATGCTAA 116
|| | |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 55 AAAAAAGAGAATGGGTGCATTTGATTATATCTCTAGCTTTTGTTCATATACATACGCTAA 114
Query 117 TGCCAAAACCAAGCGTAAGCCATTGCAGACTGTGGATATCAAGGTAAAAATGGACTGTGA 176
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 115 TGCCAAAACCAAGCGTAAGCCATTGCAGACAGTGGATATCAAGGTGAAAATGGACTGTGA 174
Query 177 TGGTTGTGAAAGAAGAGTTAGAAACGTGGTTCGTCGCATGAAAGGGGTGAAATCGGTGGA 236
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TGGTTGTGAAAGGAGAGTTAGAAACGTGGTTCGTCGCATGAAAGGGGTGAAATCGGTGGA 234
Query 237 GGTGAACCGGAAACAGAGCCGGATAACGGTGAACGGACACGTGGACCCAAACAAGGTGTT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GGTGAACCGGAAACAGAGCCGGATAACGGTGAACGGACACGTGGACCCAAACAAGGTGTT 294
Query 297 GAAGAGAGTGAAGAGCACCGGTAAAAAGGCTGAGTTTTGGCCGTACATACCTCAACATAT 356
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 295 GAAGAGAGTGAAGAGCACCGGTAAAAAGGCTGAGTTTTGGCCTTACATACCTCAACATAT 354
Query 357 GGTCTATTACCCTTTTGCCCCTGGCATGTACGACAAACGCGCCCCTGCAGGCCACATCCG 416
|||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||
Sbjct 355 GGTCTATTACCCTTTTGCTCCTGGCATGTACGATAAACGTGCACCTGCAGGCCACATCCG 414
Query 417 CAACCCCACTCAATCGTTTCCAACCGCAAACGCTCCCGAGGAAAATTACGTTACTCTCTT 476
|| |||||||||||||||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 415 TAATCCCACTCAATCGTTTCCAACAGCAAACGCTCCCGAGGAAAATTACGTTTCCCTCTT 474
Query 477 CAGCGACGACAACGTCCACGCCGCTTGTTCCATCATGTGAGC-AACCAACCAAAAGATTA 535
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 475 CAGCGACGACAACGTCCACGCCGCTTGTTCCATCATGTGAGCCAACCAACCAAAAGATTA 534
Query 536 TTCATAATCTCTATTTTGTAATTTGTATACTTTTCTTACTTTTGTTAAAATCAAAAGGTA 595
|||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 535 CTCATAATCTCCATTTTGTAATTTGTATACTTTT---------GTTAAAATCAAAAGGTA 585
Query 596 ATGTAGAAACTTTGTAATAAA-TTATAGAGACAACACTTAAAACGGAATCTATTTGATGG 654
|||||| |||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 586 ATGTAGGAACTTTGTAATAAAATTATAGAGACAACAC------CGGAATCTATTTGATGG 639
Query 655 TTTATGTTTCGAACAATACT 674
||||||||||||||||||||
Sbjct 640 TTTATGTTTCGAACAATACT 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32601961403
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5