BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488616
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17500.1 | Symbols: | Glycosyl hydrolase superfamily protei... 2484 0.0
> AT5G17500.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr5:5767379-5769719 FORWARD LENGTH=1581
Length=1581
Score = 2484 bits (1345), Expect = 0.0
Identities = 1507/1586 (95%), Gaps = 7/1586 (0%)
Strand=Plus/Plus
Query 1 ATGGCAAAAACAATCTCTCCTTTAACTCTCGTTTTGTTCTTACTCTTGTCATCAATATCT 60
||||||||| ||| || |||||||| || ||||||||||| ||||||||| |||||||
Sbjct 1 ATGGCAAAAGCAA--TC-GCTTTAACTGTCTTTTTGTTCTTATTCTTGTCATTAATATCT 57
Query 61 CTAACCCTAGCGACAGATTATCCACTATTCACAAAGTCGCGATGGATCGTAAACAAGAAG 120
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 58 CTAACCCTAGCAACAGATTATCCACTATTCACAAAGTCTCGATGGATCGTAAACAACAAG 117
Query 121 GGCCACCGCGTGAAGCTAGCTTGCGCAAATTGGCCTTCGCACCTCAAGCCAGTGGTAGCC 180
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 118 GGCCACCGCGTGAAGCTAGCTTGCGCGAACTGGCCTTCGCACCTCAAGCCAGTGGTAGCA 177
Query 181 GAGGGGCTGAGCAGCCAGCCAATGGATTCGATATCGAAGAAGATAAAAGACATGGGCTTC 240
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 178 GAGGGGCTGAGCAGCCAGCCAATGGATTCAATATCGAAAAAGATAAAAGACATGGGATTC 237
Query 241 AATTGTGTTAGGCTCACTTGGCCACTTGAGTTAATGATTAATGACACTTTAGCCTTTAAT 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 238 AATTGTGTTAGGCTCACTTGGCCACTTGAATTAATGATTAATGACACTTTAGCCTTTAAT 297
Query 301 GTTACCGTGAAACAATCATTTGAGAGATATGGATTGGATCATGAGCTTCAAGGGATTTAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GTTACCGTGAAACAATCATTTGAGAGATATGGATTGGATCATGAGCTTCAAGGGATTTAC 357
Query 361 ACTCACAATCCATCCATTGTCAATATTCCTCTCATCAATGCCTTTCAGGCTGTGGTGTAT 420
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 358 ACTCACAATCCATACATTGTCAATACTCCTCTCATCAATGTCTTTCAGGCTGTGGTGTAT 417
Query 421 AGTCTTGGGAGGCATGATGTGATGGTGATACTTGACAACCACAAGACCGTACCGGGTTGG 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 418 AGTCTTGGGAGGCATGATGTGATGGTGATACTTGACAACCACAAGACCGTACCGGGGTGG 477
Query 481 TGTTGCAGCAACAATGACCCGGACGCGTTCTTTGGCGACCCAAAATTCAACCCCGATCTA 540
||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 478 TGTTGTAGCAACGATGACCCGGACGCGTTCTTTGGCGACCCAAAATTCAACCCGGATCTA 537
Query 541 TGGATGTTGGGTCTTAAGAAGATGGCCACAATCTTTATGAACGTGAACAACGTTGTTGGT 600
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 538 TGGATGTTGGGTCTTAAGAAGATGGCCACAATATTTATGAACGTGAAAAACGTTGTTGGT 597
Query 601 ATGAGCCTGAGGAATGAACTTAGAGGCTACAATCATACAGCAAAAGATTGGTACAAGTAC 660
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 598 ATGAGCCTGAGGAATGAACTTAGAGGCTACAATCATACATCAAAAGATTGGTACAAGTAC 657
Query 661 ATGCAAAAAGGAGCAGAAGCAGTGCACACATCAAACCCTAACGTACTGGTCATACTCTCA 720
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 658 ATGCAAAAAGGAGCAGAAGCAGTGCATACATCAAACCCTAACGTACTGGTCATACTCTCA 717
Query 721 GGGCTTAATTTTGATGCTGACCTAAGTTTCTTACAAGATCGTCCAGTGAATCTTAGCTTC 780
|||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 718 GGGCTTAACTTCGATGCTGACCTAAGTTTCTTAAAAGATCGTCCAGTGAATCTTAGCTTC 777
Query 781 AAGAAAAAACTTGTCTTGGAGCTTCATTGGTATTCTTTCACTGACGGTACTGGTCAATGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AAGAAAAAACTTGTCTTGGAGCTTCATTGGTATTCTTTCACTGACGGTACTGGTCAATGG 837
Query 841 AAGTCACACAATGTCAACGACTTTTGCAGCCAAATGTTCGCTAAGGAGCATCGTACCGGT 900
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 838 AAGTCACACAATGTCAACGACTTTTGCAGCCAAATGTTCTCTAAGGAGCGTCGTACCGGC 897
Query 901 GGTTTCGTTCTCGAACAAGGCTTTCCTTTGTTCTTGAGCGAGTTTGGGACCGATCAAAGA 960
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GGTTTTGTTCTCGACCAAGGCTTTCCTTTGTTCTTGAGCGAGTTTGGGACCGATCAAAGA 957
Query 961 GGTGGGGATTTTGAAGGAAACAGGTACATGAGTTGCATGTTGGCATGGGCGGCTGAAAAA 1020
||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||| || |||
Sbjct 958 GGTGGCGATCTTGAAGGAAACAGGTACATGAATTGTATGTTGGCATGGGCGGCCGAGAAA 1017
Query 1021 GATATAGATTGGGCGGTTTGGGCGCTTACGGGAGTTTATTATTTCCGCGAAGGCAAACGC 1080
||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1018 GATTTGGATTGGGCGGTTTGGGCGGTTACGGGAGTTTATTATTTCCGCGAAGGCAAACGT 1077
Query 1081 GGTGTACTTGAAGCTTACGGTATGTTAGATGCGAATTGGCACAATGTTCATAACTATACT 1140
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1078 GGTGTAGTTGAAGCTTACGGTATGTTAGATGCGAATTGGCATAATGTTCATAACTATACT 1137
Query 1141 TATCTCCGAAGGCTCTCCGTCATTCAACCACCGCACAAAGGACCCGGTATAAAGCACAAT 1200
|||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1138 TATCTCCGTAGGCTCTCCGTCATTCAACCACCGCACACAGGACCCGGTGTAAAGCACAAT 1197
Query 1201 CATCACAAGAAAATATTCCATCCGTTAACGGGACTCTGCCTAGTGAGAAAGTCATCA-TG 1259
||||||||||||||||| ||||||||||| |||||||||||||||||||||||| || ||
Sbjct 1198 CATCACAAGAAAATATTTCATCCGTTAACCGGACTCTGCCTAGTGAGAAAGTCA-CACTG 1256
Query 1260 CTATGAGTCCGAGCTCATGTTAGGTCCGTGCACAAAGGGCGAACCTTGGAGCTATTCTCA 1319
| ||||||||||||||| ||||||||| |||||||||| |||||| ||||||||||||||
Sbjct 1257 CCATGAGTCCGAGCTCACGTTAGGTCCATGCACAAAGGACGAACCGTGGAGCTATTCTCA 1316
Query 1320 TGGAGGCATACTTGAGATCAAAGGCGGTCACAAATCTTGCTTAGAAGGCGAAACTGCGGT 1379
|||||||||||||||||||| | ||||||||||||||||||||||||| ||||| |||||
Sbjct 1317 TGGAGGCATACTTGAGATCAGACGCGGTCACAAATCTTGCTTAGAAGGAGAAACAGCGGT 1376
Query 1380 GGGAAGAAGTGTGAAACTTGGCAAGAAATGCACAAAGATT-ATGCAAATATCGGCCACAA 1438
|||| ||||||||||||||||| || ||||||||||||| | |||||||||||||||||
Sbjct 1377 CGGAAAAAGTGTGAAACTTGGCAGGATATGCACAAAGATTGA-GCAAATATCGGCCACAA 1435
Query 1439 AGATGCATTTGTCGTTGAAGACTAATGATGGTTCGTTGGTATGCTTAGACGTGGATTCAG 1498
|||||||||||||||| || |||| ||| ||||||||||||||||||||||||||||| |
Sbjct 1436 AGATGCATTTGTCGTTCAACACTAGTGACGGTTCGTTGGTATGCTTAGACGTGGATTCGG 1495
Query 1499 ATAACAATGTTGTTGCTAATTCTTGCAAGTGTTTGACCGGAGATATTACTTGTGAACCTG 1558
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1496 ATAACAATGTTGTTGCTAATTCTTGCAACTGTTTGACCGGAGATACTACTTGTGAACCTG 1555
Query 1559 CAAGCCAATGGTTCAAAATCTTCTGA 1584
||||||||||||||||||||||||||
Sbjct 1556 CAAGCCAATGGTTCAAAATCTTCTGA 1581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78212449110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5