BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488617
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17510.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1829 0.0
> AT5G17510.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G03460.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:5769973-5772395 REVERSE LENGTH=1707
Length=1707
Score = 1829 bits (990), Expect = 0.0
Identities = 1176/1261 (93%), Gaps = 31/1261 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGACACGAAGCCACCACCATTGGGAGGTAACAATCCTcagcagcagcagcagcag 60
||||||||||||||| |||||||||||||||||||| | | | ||||||||||||
Sbjct 53 ATGGAGGACACGAAG---CCACCATTGGGAGGTAACAA--C-AATCCTCAGCAGCAGCAG 106
Query 61 caacaacaacaacttctctatcaacaccaa-t-----tacaacagcgacaacaacaaatg 114
|||||||||||||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct 107 CAACAACAACAACTTCTCTATCAACACCAACTACAACAACAACAGAGACAACAACAAATG 166
Query 115 cttctcttgcaacaattgcaaaagcagcaacatcaacaacagcaacaagcagcaaTGTCT 174
||||| ||||| ||||||| | | || | |||||||||||||||||||||||||||
Sbjct 167 CTTCTATTGCAGCAATTGC---A--A--AA-A-CAACAACAGCAACAAGCAGCAATGTCT 217
Query 175 AGATTCCCATCGAACATCGACGTTCATCTCCGTCCACCGGGTTTGATTCAGAACCGACCC 234
|||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 218 AGATTCCCGTCGAACATCGACGTGCATCTCCGGCCACCGGGGTTGATTCAGAACCGACCC 277
Query 235 ATTAATCCTCCGCCTCAGCAGAATCCTAACCCTAACCCTAATTTGGGACAACATACACCG 294
|||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||
Sbjct 278 ATTAATCCTCCGCCTCAGCAGAATCCTACCCCTAACCCTAATTTGGGACAGCAGACACCG 337
Query 295 AATTTTcaacagcagcagcag--g-ttgtatcgagccagcagatgatgcagcagcaacaa 351
||||||||||||||||||||| | ||||||||| ||||||||||||||||| ||||||
Sbjct 338 AATTTTCAACAGCAGCAGCAGCAGAATGTATCGAGTCAGCAGATGATGCAGCAACAACAA 397
Query 352 c-a-a-cagcagcagcagAAATTGATGCGGCCATTGAATCACATCGAGCTTCAATGCGCT 408
| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 398 CAACAGCAGCAGCAGCAGAAATTGATGAGGCCATTGAATCACATCGAGCTTCAATGCGCT 457
Query 409 TATCAGGACGCTTGGCGTGTTTGTCACCCGAATTTTAAACAACCTTTCTCTTCTCTTGAA 468
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 458 TATCAGGACGCTTGGCGTGTTTGTCACCCCAATTTTAAACAACCCTTCTCTTCTCTCGAA 517
Query 469 GATGCTTGCGAGAGATTATTACCATATCATGTCGTAGCAGATTACGAAGCAGAAGAGGAT 528
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 518 GATGCTTGCGAGAGATTATTACCTTATCATGTCGTAGCAGATTACGAAGCAGAAGAGGAT 577
Query 529 GATAGAATCCTTGATTCGGATCCAACAGGCCAGGCCTTATCTCGCTCTCAACAATGGGAT 588
||||||||||||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct 578 GATAGAATCCTTGATTCAGACCCAACAGGCCAGGCCTTGTCCCGCTCTCAACAATGGGAT 637
Query 589 AATAACATTGCTGCTAAAGTTGCTGAATTCACGGCAACGTTTGAGAAACAAGCCCTAGCT 648
|| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 638 AACAACATTGCTGCGAAAGTTGCTGAATTCACGGCAACGTTTGAGAAGCAAGCACTAGCT 697
Query 649 TTTAACATAATAACTCGAAAGCGAGGAATGGGAGAATTCAGATCTGAGGAAAGGTTGATG 708
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 698 TTTAACATAATAACTCGAAAGAGAGCTATGGGAGAATTCAGATCTGAGGAAAGGTTGATG 757
Query 709 GTAGAACAAGCTTTGCTACAAGAAGAAAGGAAATCGTTGATTGAACTGAAAGCAGAAATG 768
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 758 GTAGAACAAGCTTTGCTACAAGATGAAAGGAAAGCGTTGATTGAACTGAAAGCAGAAATG 817
Query 769 GATAGGGAGAAGGCTGGCCGGGAGGCTCAGGAGGCTAAGCTGCGGATGGCGGCTTTAGCT 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GATAGGGAGAAGGCTGGCCGGGAGGCTCAGGAGGCTAAGCTGCGGATGGCGGCTTTAGCT 877
Query 829 CAAGCTGGACAGTCTCAATCTCATGCTGAGATAATGGCTCGTAATCCATTGAGGGCTAAT 888
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 878 CAAGCTGGACAGTCTCAATCTCATGCTGAGATAATGGCTCGTAACCCATTAAGGGCTAAT 937
Query 889 GCGGTTGGGAATCAGGGCAGTAATATTCAGCTTAGCCATGAGATGGGGGAACAGGGACGT 948
|||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 938 GCGGTTGGAAATCAGGGCAGCAATATTCAGCTTAGCCACGAGATGGGAGAACAGGGACGT 997
Query 949 AACATGAACCCTGATGAGATGATGAATGGATGGGGAAACAACAGCCAGAGAGAGGACAAG 1008
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 998 AACATGAACCCTGATGAGATGATGAATGGATGGGGAAACAACAGTCAGAGAGAGGACAAG 1057
Query 1009 GAACCTTCAGAAGATTTCTTGAATGATGAGGAGAATGAGAATGGAGAGACAGGGGAACAA 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 GAACCTTCAGAAGATTTCTTGAATGATGAGGAGAATGAGAATGGAGAGACAGGGGAACAA 1117
Query 1069 GAAAACTGGCGTGAGGCAGGAGAATTTGATTTGAATAGCCGGTAAATGACCAAGGTGAAG 1128
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 GAAAACTGGCGTGAAGCAGGAGAATTTGATTTGAATAGCCGGTAAATGACCAAGGTGAAG 1177
Query 1129 ACTATTTGCAGTCTCATGTACTCGAAACTAGAAAGGAAATTACAGCTGCTCTTGATATCA 1188
|||||||||||||||||||| | |||||| ||||||||||||||| ||||||||||||||
Sbjct 1178 ACTATTTGCAGTCTCATGTATTAGAAACTGGAAAGGAAATTACAGTTGCTCTTGATATCA 1237
Query 1189 CTC-AGATAAGTAGA-TT-CAAGCTGCTATATATACCGGGTTCAGGTCAAGTATATGGGT 1245
||| | || || | || ||||||||||||||| || ||||||||||||||||||||||
Sbjct 1238 CTCCA-ATTTCTATAGTTTCAAGCTGCTATATATGCCAGGTTCAGGTCAAGTATATGGGT 1296
Query 1246 A 1246
|
Sbjct 1297 A 1297
Score = 339 bits (183), Expect = 6e-92
Identities = 222/240 (93%), Gaps = 5/240 (2%)
Strand=Plus/Plus
Query 1245 TACCAGATGATGGTTCCAAGTAAGCATTGATTGTATCTGTTTAATGTTTTGTAGCTTAAG 1304
||||| |||||||||||||||||||||| |||||||||||| |||||||||||| ||||
Sbjct 1351 TACCA-ATGATGGTTCCAAGTAAGCATTTCTTGTATCTGTTTGATGTTTTGTAGCATAAG 1409
Query 1305 TTAGATGTGTGCATTACATGTTGATGATTAGTGTCTTCATGATACATGGAGATGGAGAGG 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 TTAGATGTGTGCATTACATGTTGATGATTAGTGTCTTCATGATACATGGAGATGGAGAGG 1469
Query 1365 CTGGTTATCTA-TAACTGAATCTTGTAAAAGGTGTAAGAGAACCAGATAATAAAGCTTAG 1423
||||||| ||| |||| |||||||||| ||||||||||||| ||||||| ||||||||||
Sbjct 1470 CTGGTTACCTAGTAACCGAATCTTGTAGAAGGTGTAAGAGATCCAGATAGTAAAGCTTAG 1529
Query 1424 TAGCTAAGATAG-TTAATATATATGTAAGTTACTATTACAGAATTGTATTGGCCATGTAT 1482
||||||| |||| ||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 1530 TAGCTAAAATAGATTA-TC-ATATGTAAGTTACTATTACAGAATTGTATTGGTTATGTAT 1587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73091993520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5