BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488618
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17520.1 | Symbols: RCP1, MEX1 | root cap 1 (RCP1) | chr5:57... 2161 0.0
AT5G17523.1 | Symbols: | Similar to Maltose excess protein 1 |... 1131 0.0
> AT5G17520.1 | Symbols: RCP1, MEX1 | root cap 1 (RCP1) | chr5:5772583-5775345
REVERSE LENGTH=1575
Length=1575
Score = 2161 bits (1170), Expect = 0.0
Identities = 1347/1429 (94%), Gaps = 26/1429 (2%)
Strand=Plus/Plus
Query 1 CTCACTCACATGATTTCACTGATATACCCTTCTTCGTCCTCCTCTCTGTTCCAAA-CCAA 59
|||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 28 CTCACTTACATGATTTCACTGATGTACCCTTCTTCTTCCTCCTCTCTGTTCCAAACCCAA 87
Query 60 GTACTACAATAATTCTTCTCTCACATTCCCATGGAAGCTAAATCCATCGCGACGTCTCTC 119
|||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 88 GTACTACAATAA---TTCTCTCACATTCCCATGGAAGGTAAAGCCATCGCGACGTCTCTC 144
Query 120 TGCGGTGACCGTGTATTGATATTCCCGAGTTCTCCTCGCTCTTCTTTCGTTTCTACATCC 179
| ||||| |||||||||||||||||| |||||||||||||||| ||||||| |||||||
Sbjct 145 GGTGGTGATCGTGTATTGATATTCCCGTGTTCTCCTCGCTCTTCCTTCGTTTTTACATCC 204
Query 180 CGGCTCTCTCGCCTGCCCCTGAAGCGTGCGTCTATCGGTGGTGGTGCCTCTTGTTCCGGC 239
||||||||| ||||||| || |||||||||||||||||||||| || |||||||||||||
Sbjct 205 CGGCTCTCTAGCCTGCCTCTAAAGCGTGCGTCTATCGGTGGTGCTGTCTCTTGTTCCGGC 264
Query 240 GTCAATGGCTTGACTCGGTGGAATTCCATTGTTTCGACTCGCCGACTCGTTCCTGTTCGT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 GTCAATGGCTTGACTCGGTGGAATTCCATTGTTTCGACTCGCCGACTCGTTCCTGTTCGT 324
Query 300 GCTATTGACTCGGAATC--A----GACTCGGACTTCCCTCACGAGAATCAGCAGGGAAAT 353
| ||| |||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 325 TCAATTAACTCGGAATCGGACTCGGACTCCGACTTCCCTCACGAGAATCAGCAGGGAAAT 384
Query 354 CCAGGTTTGGGGAAATTTAAGGAATACCAAGAATGGGATTCATGGACGGCCAAGTTCTCC 413
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 385 CCAGGTTTGGGGAAATTTAAGGAATACCAAGAATGGGACTCATGGACGGCCAAGTTCTCC 444
Query 414 GGTGGAGCAAACATTCCATTTCTCATGCTGCAATTGCCACAGATTATCCTCAATTCCCAG 473
||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||| |||||
Sbjct 445 GGTGGAGCAAACATTCCGTTTCTCATGCTCCAATTGCCTCAGATCATCCTCAATACCCAG 504
Query 474 AATCTTTTGGCGGGAAACAATACCGCTCTTTCGGCTGTCCCATGGCTGGGAATGTTGACT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 AATCTTTTGGCGGGAAACAATACCGCTCTTTCGGCTGTCCCATGGCTGGGAATGTTGACT 564
Query 534 GGTTTGTTAGGAAACCTTTCGTTGCTTTCTTATTTTGCTAAGAAGAGAGAAAAAGAAGCA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 GGTTTGTTAGGAAACCTTTCGTTGCTTTCTTATTTTGCTAAGAAGAGAGAAAAAGAAGCA 624
Query 594 GCTGTTGTGCAAACACTAGGAGTGGTCTCTACTCACATTGTGCTTGCACAGCTCACAATT 653
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 625 GCTGTGGTGCAAACACTGGGAGTGGTCTCTACTCACATTGTGCTTGCACAGCTCACAATG 684
Query 654 GCTGAAGCAATGCCTATGCAGTATTTTGTTGCCACTTCAGCCGTTGTCACGATTGGTCTC 713
||||||||||||||||| |||||||||||||| |||||||| |||||||| || ||||||
Sbjct 685 GCTGAAGCAATGCCTATTCAGTATTTTGTTGCTACTTCAGCTGTTGTCACCATCGGTCTC 744
Query 714 ATAT-TGAACTGTTTGTACTATTTCGGTAAGCTTAGCAAAACTGCGTGGCAACTGTGGGA 772
|| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 745 AT-TGTGAACTGTTTGTACTATTTCGGTAAGCTTAGCAAAACTGTGTGGCAACTGTGGGA 803
Query 773 AGACTTTATCACTATTGGTGGACTCTCCGTTCTTCCTCAAATCATGTGGTCAACTTTTGT 832
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 804 AGACGTTATCACTATTGGTGGACTCTCCGTTCTTCCTCAAATCATGTGGTCAACATTTGT 863
Query 833 CCCTCTTGTACCAAACAGTATCTTGCCTGGGACAACTGCTTTTGGTATTGCTGTAGCAGC 892
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 864 CCCTCTTGTACCAAACAGTATCTTGCCTGGGACAACTGCTTTTGGTATTGCTGTGGCAGC 923
Query 893 TATAATTATGGCTCGAACTGGGAAACTTTCAGAGAAAGGTGTTAGGTTTGTCGGGTCTTT 952
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 924 TATAATCATGGCTCGAACTGGGAAACTTTCAGAGAAAGGTGTTAGGTTTGTAGGGTCTTT 983
Query 953 ATCTGGATGGACAGCAACTCTTATGTTCATGTGGATGCCAGTTTCCCAAATGTGGACAAA 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 ATCTGGATGGACAGCAACTCTTATGTTCATGTGGATGCCAGTTTCCCAAATGTGGACAAA 1043
Query 1013 TTTCCTAAACCCGGACAACATAAAAGGCTTATCGTCAATCACAATGTTGCTCTCGATGAT 1072
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 TTTTCTAAACCCGGACAACATAAAAGGCTTATCGTCAATCACAATGTTGCTCTCGATGAT 1103
Query 1073 GGGAAACGGGCTTATGATCCCACGAGCACTATTTATCCGTGATTTGATGTGGCTCACTGG 1132
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1104 GGGAAACGGGCTTATGATCCCTCGAGCACTATTTATCCGTGATTTGATGTGGCTCACTGG 1163
Query 1133 TTCGCTATGGGCAACTCTCTTTTATGGATATGGAAATATCCTTTGCTTATACATGGTAAA 1192
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1164 TTCGCTATGGGCAACTCTCTTTTATGGATATGGAAATATTCTTTGCTTATACCTGGTAAA 1223
Query 1193 TTGCACCAGCAAGTCATTCTTCGTGGCAGCTACAATTGGTTTGATCTCATGGATAGGATT 1252
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1224 TTGCACCAGCCAGTCATTCTTCGTGGCAGCTACAATTGGTTTGATCTCATGGATAGGACT 1283
Query 1253 GGCTTTGTGGAGAGACGCAGTGGCTTATGGTCACAACTCCCCGTTTAGATCTTTGAAAGA 1312
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1284 GGCTTTGTGGAGAGATGCAGTGGCTTATGGTCACAACTCGCCGTTTAGATCTTTGAAAGA 1343
Query 1313 ACTCATTTTTGGACCATAATGAATGAGTGAGTGTACACGCCAATACGCCATAAACGCCGT 1372
||| |||||||||| |||||||||| | ||||||||||| || | | |||| |
Sbjct 1344 ACTTGTTTTTGGACCGTAATGAATGA---A-TGTACACGCCA-TA----A-A--CGCCCT 1391
Query 1373 TTGTTCAAGCAAAGTCCTTAGGGGtttacatgtatttttattctttttt 1421
|||||||||||| |||| ||| | || ||||||||||| ||||||||||
Sbjct 1392 TTGTTCAAGCAA-GTCCATAGAGATT-ACATGTATTTTCATTCTTTTTT 1438
> AT5G17523.1 | Symbols: | Similar to Maltose excess protein 1
| chr5:5775586-5777327 REVERSE LENGTH=1064
Length=1064
Score = 1131 bits (612), Expect = 0.0
Identities = 712/759 (94%), Gaps = 12/759 (2%)
Strand=Plus/Plus
Query 1 CTCACTCACATGATTTCACTGATATACCCTTCTTCGTCCTCCTCTCTGTTCCAAA-CCAA 59
|||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 10 CTCACTTACATGATTTCACTGATGTACCCTTCTTCTTCCTCCTCTCTGTTCCAAACCCAA 69
Query 60 GTACTACAATAATTCTTCTCTCACATTCCCATGGAAGCTAAATCCATCGCGACGTCTCTC 119
|||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 70 GTACTACAATAA---TTCTCTCACATTCCCATGGAAGGTAAAGCCATCGCGACGTCTCTC 126
Query 120 TGCGGTGACCGTGTATTGATATTCCCGAGTTCTCCTCGCTCTTCTTTCGTTTCTACATCC 179
| ||||| |||||||||||||||||| |||||||||||||||| ||||||| |||||||
Sbjct 127 GGTGGTGATCGTGTATTGATATTCCCGTGTTCTCCTCGCTCTTCCTTCGTTTTTACATCC 186
Query 180 CGGCTCTCTCGCCTGCCCCTGAAGCGTGCGTCTATCGGTGGTGGTGCCTCTTGTTCCGGC 239
||||||||| ||||||| || |||||||||||||||||||||| || |||||||||||||
Sbjct 187 CGGCTCTCTAGCCTGCCTCTAAAGCGTGCGTCTATCGGTGGTGCTGTCTCTTGTTCCGGC 246
Query 240 GTCAATGGCTTGACTCGGTGGAATTCCATTGTTTCGACTCGCCGACTCGTTCCTGTTCGT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GTCAATGGCTTGACTCGGTGGAATTCCATTGTTTCGACTCGCCGACTCGTTCCTGTTCGT 306
Query 300 GCTATTGACTCGGAATC--A----GACTCGGACTTCCCTCACGAGAATCAGCAGGGAAAT 353
| ||| |||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 307 TCAATTAACTCGGAATCGGACTCGGACTCCGACTTCCCTCACGAGAATCAGCAGGGAAAT 366
Query 354 CCAGGTTTGGGGAAATTTAAGGAATACCAAGAATGGGATTCATGGACGGCCAAGTTCTCC 413
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 367 CCAGGTTTGGGGAAATTTAAGGAATACCAAGAATGGGACTCATGGACGGCCAAGTTCTCC 426
Query 414 GGTGGAGCAAACATTCCATTTCTCATGCTGCAATTGCCACAGATTATCCTCAATTCCCAG 473
||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||| |||||
Sbjct 427 GGTGGAGCAAACATTCCGTTTCTCATGCTCCAATTGCCTCAGATCATCCTCAATACCCAG 486
Query 474 AATCTTTTGGCGGGAAACAATACCGCTCTTTCGGCTGTCCCATGGCTGGGAATGTTGACT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 AATCTTTTGGCGGGAAACAATACCGCTCTTTCGGCTGTCCCATGGCTGGGAATGTTGACT 546
Query 534 GGTTTGTTAGGAAACCTTTCGTTGCTTTCTTATTTTGCTAAGAAGAGAGAAAAAGAAGCA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GGTTTGTTAGGAAACCTTTCGTTGCTTTCTTATTTTGCTAAGAAGAGAGAAAAAGAAGCA 606
Query 594 GCTGTTGTGCAAACACTAGGAGTGGTCTCTACTCACATTGTGCTTGCACAGCTCACAATT 653
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GCTGTGGTGCAAACACTGGGAGTGGTCTCTACTCACATTGTGCTTGCACAGCTCACAATG 666
Query 654 GCTGAAGCAATGCCTATGCAGTATTTTGTTGCCACTTCAGCCGTTGTCACGATTGGTCTC 713
||||||||||||||||| |||||||||||||| |||||||| |||||||| || ||||||
Sbjct 667 GCTGAAGCAATGCCTATTCAGTATTTTGTTGCTACTTCAGCTGTTGTCACCATCGGTCTC 726
Query 714 ATAT-TGAACTGTTTGTACTATTTCGGTAAGCTTAGCAA 751
|| | |||||||||||||||||||||||||||||| |||
Sbjct 727 AT-TGTGAACTGTTTGTACTATTTCGGTAAGCTTAACAA 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74698410960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5