BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488622
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17540.1 | Symbols: | HXXXD-type acyl-transferase family pr... 713 0.0
AT3G03480.1 | Symbols: CHAT | acetyl CoA:(Z)-3-hexen-1-ol acety... 259 5e-68
> AT5G17540.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr5:5781987-5783706 REVERSE LENGTH=1484
Length=1484
Score = 713 bits (386), Expect = 0.0
Identities = 576/663 (87%), Gaps = 32/663 (5%)
Strand=Plus/Plus
Query 1 ATGTCCGGGTTGCTCACGTTTACGGTTCACCGGAAGAAGCCGGAGTTAGTTTCTCCGGTA 60
|||||||||| |||||||||| | || ||||| ||||||||||||||||||||||||
Sbjct 25 ATGTCCGGGTCACTCACGTTTAAGATTTACCGGCAGAAGCCGGAGTTAGTTTCTCCGGCG 84
Query 61 AAACCAACACCGAGAGAGCTCAAACTCCTCTCAGACATCGACGACCAAGAAGGCCTAAGA 120
|| ||||| || ||||||||||||| ||||||||| || |||||||||||||| ||||||
Sbjct 85 AAGCCAACGCCAAGAGAGCTCAAACCCCTCTCAGATATTGACGACCAAGAAGGACTAAGA 144
Query 121 TTCCACATTCCCACTATCTTCTTCTATAG--AC-A---TA--AC---C-CT-A--C--T- 162
|| ||||||||||||||||| |||||||| || | || || | || | | |
Sbjct 145 TTTCACATTCCCACTATCTTTTTCTATAGACACAACCCTACTACTAACTCTGATCCTGTC 204
Query 163 GC--TTATTC--CGA----TC-C---GACGCTGGTTTACTACTACCCGTTTGCAGGTAGG 210
|| | |||| || || | |||||||||||||||||| ||||| || ||||||
Sbjct 205 GCAGTCATTCGGAGAGCTCTCGCAGAGACGCTGGTTTACTACTATCCGTTCGCCGGTAGG 264
Query 211 CTCCGGGAAGGACAGAACCGGAAACTTGCCGTGGACTGCACCGGTGAAGGCGTTTTGTTC 270
|| |||||||||| |||||||||||| || ||||| || ||||||||||||||||||||
Sbjct 265 CTTCGGGAAGGACCGAACCGGAAACTGGCTGTGGATTGTACCGGTGAAGGCGTTTTGTTT 324
Query 271 ATTGAGGCTGATGCTGACGTGACACTTGTTGAGTTTGAAGAGAAGGATGCTCTTAAGCCT 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 ATTGAGGCTGATGCTGACGTGACACTTGTTGAGTTTGAAGAGAAGGATGCTCTTAAGCCT 384
Query 331 CCATTCCCTTGCTTTGAAGAGCTTCTGTTTGAC-TTAGAAGGTTCTAGTGAAATGCTCAA 389
|| ||||||||||||||||||||||||||| || || ||||||||| |||||||||||||
Sbjct 385 CCTTTCCCTTGCTTTGAAGAGCTTCTGTTTAACGTT-GAAGGTTCTTGTGAAATGCTCAA 443
Query 390 CACTCCTTTGATGCTCATGCAGGTCACGCGCTTAAAATGCGGCGGTTTTATCTTCGCCGT 449
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 444 CACTCCTTTGATGCTCATGCAGGTCACGCGCTTGAAATGCGGCGGTTTTATCTTCGCCGT 503
Query 450 CCGTATCAACCACGTAATGTCGGACGCTGCCGGTCTCAAGCTCTTTCTCAAAACGATGTG 509
|||||||||||||| |||||| || || | |||||||| ||| || ||||||||||||||
Sbjct 504 CCGTATCAACCACGCAATGTCCGATGCCGGCGGTCTCACGCTGTTCCTCAAAACGATGTG 563
Query 510 CGAGTTCGTGCGTGGTTATCATGCGCCTACGGTTGCTCCGGTGTGGGGACGTCACCTGCT 569
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 564 CGAGTTCGTGCGTGGTTATCATGCACCTACGGTTGCTCCGGTGTGGGAACGTCACCTGCT 623
Query 570 GAACGCCTGTGTCCCGGTGCGTGTGACACACATGCACCGGGAATACGATGAAATGCCAGC 629
|| |||| | |||| | |||||||||||||| ||||| || ||||| |||||||| ||
Sbjct 624 GAGCGCCAGAGTCCTGCTGCGTGTGACACACGCACACCGAGAGTACGACGAAATGCCGGC 683
Query 630 AAT 632
|||
Sbjct 684 AAT 686
Score = 669 bits (362), Expect = 0.0
Identities = 431/464 (93%), Gaps = 5/464 (1%)
Strand=Plus/Plus
Query 894 ACTAAGAAACCAGGCGAAATTGAGCGTGACAGAGGAGTACATGCGATCGCTTGCGGATCT 953
||||| ||| ||||||||| ||||||||| ||||||||||||||||| |||||||||||
Sbjct 1023 ACTAATAAAAGAGGCGAAATCGAGCGTGACGGAGGAGTACATGCGATCACTTGCGGATCT 1082
Query 954 TATGGTGATAAAGGGAAGACCAAGCTTCTCGTCGGACGGAGCTTACTTGGTATCGGATGT 1013
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1083 GATGGTGATAAAGGGAAGACCAAGCTTCTCGTCGGACGGAGCTTACTTGGTTTCGGATGT 1142
Query 1014 GAGAATTTTCGCAGACATCGATTTCAAAATTTGGGGGAAACCGGTTTACGGAGGAATTGG 1073
|||||||||||||| || |||||| ||||||||||||||| |||||||||||||||||
Sbjct 1143 AAGAATTTTCGCAGATATTGATTTCGGAATTTGGGGGAAACCAGTTTACGGAGGAATTGG 1202
Query 1074 TACAGCCGGAGTTCG-GGATTTTCCGGGGGCTAGCTTCTACGTTTCGA-CTGAGAAGAGA 1131
||||||||||||| | || ||||||||||||||||||||||||| | ||||||||||
Sbjct 1203 TACAGCCGGAGTT-GAAGACCTTCCGGGGGCTAGCTTCTACGTTTC-ATTTGAGAAGAGA 1260
Query 1132 AATGGTCAGATAGGGATCATTGTACCGGTTTGTTTGCCAGAGAAGGCGATGCAAATGTTT 1191
|||||| ||||||||||| |||||||||||||||||||||||||||||||||| | ||||
Sbjct 1261 AATGGTGAGATAGGGATCGTTGTACCGGTTTGTTTGCCAGAGAAGGCGATGCAGAGGTTT 1320
Query 1192 GTGGAAGAGCTTGAGGGTGTGTTTAATGGTCAATTTGTATTCAATAGAGGAAGCAAAAAG 1251
|||||||||||||| || ||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1321 GTGGAAGAGCTTGAAGGCGTGTTTAATGGTCAAGTTGTATTCAATAGAGGAAGC-AAAAG 1379
Query 1252 CTCTAACAAACTGATCATGTCTTCTCTGTAAAAACTACCTTATTGATAACTTCAATGCAA 1311
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CTCTAATAAATTGATCATGTCTTCTCTGTAAAAACTACCTTATTGATAACTTCAATGCAA 1439
Query 1312 TGATTGTCTTAGTAAAGAAACTCGAACTCTCTGTATCTGTTTGC 1355
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1440 TGATTGTCTTAGTAAAGAAACTCGAACTCTCTGTATTTGTTTGC 1483
Score = 281 bits (152), Expect = 1e-74
Identities = 203/228 (89%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 634 GGCCGGTCATTCTTCTTTGG-CCATGACGAGATGTTCGCAATACGGAGGCTCCTCCCACC 692
||||||||| ||||||| || || || |||||||| ||||||||| ||||||||||||||
Sbjct 724 GGCCGGTCACTCTTCTTCGGTCCCTG-CGAGATGTCCGCAATACGCAGGCTCCTCCCACC 782
Query 693 GAATCTTGTCAACAGCAGCACCAATATGGAAACGCTGACGTCGTTCTTATGGGGTTATCG 752
||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |||||||
Sbjct 783 AAATCTTGTCAACAGCAGCACCAATATGGAAATGCTAACGTCTTTCTTATGGCGTTATCG 842
Query 753 CACTGTCGCTCTACAACCCGACCCGGACAAGGAGATGCGACTCATATTCATCGTCAATGC 812
||| ||||||||| ||| |||| ||||||||||||||| |||||||| || ||||| ||
Sbjct 843 CACCATCGCTCTACGACCAGACCAGGACAAGGAGATGCGGCTCATATTAATTGTCAACGC 902
Query 813 GCGTTCTAAGCTTAAAAACCCACCACTACCTCCAGGATATTACGGAAA 860
||||||||||||||||| ||||||||||||| |||||| ||||||||
Sbjct 903 ACGTTCTAAGCTTAAAAATCCACCACTACCTCGAGGATACTACGGAAA 950
> AT3G03480.1 | Symbols: CHAT | acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase
| chr3:828296-829896 REVERSE LENGTH=1502
Length=1502
Score = 259 bits (140), Expect = 5e-68
Identities = 284/352 (81%), Gaps = 16/352 (5%)
Strand=Plus/Plus
Query 179 CGCTGGTTTACTACTACCCGTTTGCAGGTAGGCTCCGGGAA-GGACAGAACCGGAAACTT 237
|||||||||||||||| ||||| || ||||||||||||||| || |||||||||||
Sbjct 272 CGCTGGTTTACTACTATCCGTTCGCTGGTAGGCTCCGGGAACTTTCA-AACCGGAAACTC 330
Query 238 GCCGTGGACTGCACCGGTGAAGGCGTTTTGTTCATTGAGGCTGATGCTGACGTGACACTT 297
|| |||||||||||||||||||||||||||||||| |||||||| ||||||||| | |||
Sbjct 331 GCGGTGGACTGCACCGGTGAAGGCGTTTTGTTCATCGAGGCTGAAGCTGACGTGGCGCTT 390
Query 298 GTTGAGTTTGAAGAGAAGGATGCTCTTAAGCCTCCATTCCCTTGCTTTGAAGAGCTTCTG 357
| |||| | |||||| ||||||||| ||||||||||||| | | |||||||||||
Sbjct 391 GCTGAGCTGGAAGAGGCTGATGCTCTTCTTCCTCCATTCCCTTTCCTAGAAGAGCTTCTC 450
Query 358 TTTGACT-TAGAAGGTTCTAGTGAAATGCTCAACACTCCTTTGATGCTCATGCAGGTCAC 416
||||| | | ||||| |||||||| |||| ||||||||| || | ||| | ||||||||
Sbjct 451 TTTGA-TGTGGAAGGCTCTAGTGATGTGCTTAACACTCCTCTGCTTCTCGTCCAGGTCAC 509
Query 417 GCGCTTAAAATGCGGCGGTTTTATCTTCGC-CGTCCG-TATCAACCACGTA--ATGTCGG 472
||| || |||||| | || ||||||||||| | |||| | ||||||| || ||| | |
Sbjct 510 GCGATTGAAATGCTGTGGATTTATCTTCGCAC-TCCGCT-TCAACCA--TACCATGACCG 565
Query 473 ACGCTGCCGGTCTCAAGCTCTTTCTCAAAACGA-TGTGCGAGTTCGTGCGTG 523
| | ||||| || ||||||||| ||| | | | |||||||| | |||||
Sbjct 566 ATGGAGCCGGCCTGTCGCTCTTTCTGAAATC-ACTATGCGAGTT-G-GCGTG 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66716524305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5